Wall clock time and date at job start Tue Mar 31 2020 12:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.47150 * 2 1 4 4 C 1.34228 * 116.99904 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00275 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99638 * 180.02562 * 4 3 2 7 7 N 1.46907 * 109.46642 * 174.29058 * 6 4 3 8 8 C 1.46895 * 111.00201 * 287.79436 * 7 6 4 9 9 C 1.50700 * 109.47188 * 295.15818 * 8 7 6 10 10 H 1.08000 * 120.00389 * 5.34718 * 9 8 7 11 11 C 1.37879 * 119.99916 * 185.35481 * 9 8 7 12 12 N 1.31516 * 119.99917 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 120.00121 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47279 * 90.00648 * 13 11 9 15 15 H 1.48509 * 109.47229 * 210.00175 * 13 11 9 16 16 H 1.48507 * 109.47089 * 330.00171 * 13 11 9 17 17 C 1.46897 * 110.99599 * 163.84258 * 7 6 4 18 18 C 1.50699 * 109.47294 * 190.00136 * 17 7 6 19 19 C 1.37873 * 120.06323 * 259.73021 * 18 17 7 20 20 C 1.38619 * 120.12492 * 179.71995 * 19 18 17 21 21 F 1.35102 * 119.87484 * 180.27650 * 20 19 18 22 22 C 1.38662 * 120.25010 * 0.54551 * 20 19 18 23 23 C 1.37829 * 120.12591 * 359.73219 * 22 20 19 24 24 C 1.39666 * 120.06619 * 79.99516 * 18 17 7 25 25 C 1.43208 * 120.12237 * 0.02892 * 24 18 17 26 26 N 6.64112 * 139.57315 * 307.63528 * 2 1 3 27 27 H 1.09001 * 109.46823 * 300.00013 * 1 2 3 28 28 H 1.09006 * 109.46791 * 59.99837 * 1 2 3 29 29 H 1.08996 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46823 * 239.99987 * 2 1 3 31 31 H 1.08996 * 109.46800 * 120.00192 * 2 1 3 32 32 H 1.09005 * 109.47165 * 54.29477 * 6 4 3 33 33 H 1.08994 * 109.47595 * 294.29121 * 6 4 3 34 34 H 1.08998 * 109.47259 * 55.15478 * 8 7 6 35 35 H 1.08998 * 109.47164 * 175.15663 * 8 7 6 36 36 H 0.97003 * 120.00164 * 179.97438 * 12 11 9 37 37 H 1.09002 * 109.47438 * 310.00024 * 17 7 6 38 38 H 1.08998 * 109.47550 * 70.00310 * 17 7 6 39 39 H 1.08001 * 119.93746 * 359.97438 * 19 18 17 40 40 H 1.08002 * 119.94030 * 179.70024 * 22 20 19 41 41 H 1.08003 * 120.06195 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3814 2.8630 0.1395 8 6 5.7617 2.4674 1.5020 9 6 5.3383 3.5393 2.4730 10 1 4.7613 4.3841 2.1270 11 6 5.6877 3.4415 3.8032 12 7 5.3177 4.3767 4.6507 13 14 6.6853 1.9802 4.4019 14 1 8.1331 2.2946 4.3014 15 1 6.3388 1.6905 5.8167 16 1 6.3770 0.7936 3.5638 17 6 6.0109 4.1367 -0.2340 18 6 7.5044 3.9533 -0.3177 19 6 8.3095 4.3582 0.7258 20 6 9.6829 4.1849 0.6526 21 9 10.4665 4.5783 1.6804 22 6 10.2559 3.6142 -0.4738 23 6 9.4614 3.2110 -1.5253 24 6 8.0761 3.3780 -1.4547 25 6 7.2455 2.9613 -2.5443 26 7 6.5855 2.6298 -3.4105 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.5050 3.5022 0.8357 33 1 3.6693 3.4351 -0.9354 34 1 5.2693 1.5295 1.7589 35 1 6.8426 2.3365 1.5540 36 1 5.5632 4.3078 5.5866 37 1 5.6298 4.4602 -1.2026 38 1 5.7791 4.8909 0.5180 39 1 7.8690 4.8075 1.6035 40 1 11.3270 3.4860 -0.5275 41 1 9.9088 2.7670 -2.4023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232893778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:00 Heat of formation + Delta-G solvation = -67.230741 kcal Electronic energy + Delta-G solvation = -27011.501693 eV Core-core repulsion = 22999.635840 eV Total energy + Delta-G solvation = -4011.865853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 6.71 seconds Orbital eigenvalues (eV) -48.77097 -40.07137 -39.46743 -37.05302 -36.00784 -35.76179 -32.61638 -31.90684 -31.47845 -30.79623 -28.51180 -27.41258 -24.68536 -23.48892 -23.06739 -22.23631 -20.94936 -19.76768 -18.59327 -17.62699 -17.01957 -16.92539 -16.42825 -16.32654 -15.69758 -15.52582 -14.87936 -14.67366 -14.40529 -14.22933 -13.83871 -13.64215 -13.50973 -13.39707 -13.20262 -12.86941 -12.59590 -12.48190 -12.30912 -12.17083 -11.98121 -11.69677 -11.51421 -11.46546 -11.28312 -11.25988 -11.11148 -10.73846 -10.50679 -10.25495 -10.05640 -9.82816 -9.68395 -8.92622 -8.70074 -8.55417 -7.50717 -6.23907 -4.25494 0.77121 1.27004 2.77713 2.91643 2.95368 3.07258 3.21835 3.30929 3.38412 3.88927 4.11146 4.27500 4.31150 4.66255 4.82393 4.90686 5.01046 5.04001 5.11037 5.19189 5.20343 5.36249 5.43918 5.57230 5.64747 5.77964 5.81029 5.82917 5.94701 5.99495 6.05787 6.12600 6.17698 6.27805 6.58464 6.67708 6.82459 6.89104 7.03510 7.33751 7.69018 7.74459 7.76532 8.25893 8.33917 8.74139 9.39218 10.87651 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010126 B = 0.005510 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.562108 B = 5080.365702 C = 7130.262257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.365 6.365 4 C 0.468 3.532 5 O -0.491 6.491 6 C 0.067 3.933 7 N -0.515 5.515 8 C 0.150 3.850 9 C -0.561 4.561 10 H 0.079 0.921 11 C 0.083 3.917 12 N -0.891 5.891 13 Si 0.865 3.135 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.262 1.262 17 C 0.087 3.913 18 C 0.017 3.983 19 C -0.131 4.131 20 C 0.123 3.877 21 F -0.135 7.135 22 C -0.163 4.163 23 C -0.052 4.052 24 C -0.029 4.029 25 C 0.270 3.730 26 N -0.424 5.424 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.159 0.841 40 H 0.140 0.860 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.159 -1.310 -9.861 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.283 6.283 4 C 0.309 3.691 5 O -0.376 6.376 6 C -0.062 4.062 7 N -0.239 5.239 8 C 0.024 3.976 9 C -0.599 4.599 10 H 0.096 0.904 11 C -0.122 4.122 12 N -0.528 5.528 13 Si 0.691 3.309 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.187 1.187 17 C -0.041 4.041 18 C 0.014 3.986 19 C -0.150 4.150 20 C 0.103 3.897 21 F -0.113 7.113 22 C -0.182 4.182 23 C -0.072 4.072 24 C -0.033 4.033 25 C -0.045 4.045 26 N -0.099 5.099 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.177 0.823 40 H 0.158 0.842 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.526 -2.454 -11.297 11.661 hybrid contribution 0.687 -0.221 1.795 1.934 sum 2.213 -2.675 -9.503 10.117 Atomic orbital electron populations 1.21786 0.93034 1.02532 1.03412 1.22898 0.94975 0.80989 1.02291 1.86485 1.25338 1.31687 1.84796 1.23723 0.79918 0.93127 0.72316 1.90623 1.60093 1.42935 1.43983 1.21442 0.90524 0.90173 1.04077 1.62147 1.04726 1.27728 1.29282 1.20331 0.96947 0.96982 0.83382 1.21586 1.36716 1.08497 0.93146 0.90358 1.24841 0.95120 0.95521 0.96680 1.69903 1.45555 1.33464 1.03903 0.86986 0.81181 0.84254 0.78439 1.19674 1.21161 1.18658 1.21062 0.88636 0.93154 1.01205 1.19639 0.96066 0.92378 0.90523 1.21334 0.91079 1.02031 1.00572 1.17959 0.88794 0.97781 0.85192 1.91523 1.74163 1.88353 1.57276 1.20952 1.01070 1.03032 0.93140 1.20873 0.91046 0.96958 0.98334 1.15926 0.91194 1.04877 0.91341 1.25445 0.93062 0.93485 0.92496 1.81260 1.08309 1.08638 1.11734 0.91428 0.91692 0.90642 0.91692 0.91444 0.88501 0.88397 0.94481 0.94939 0.92469 0.90993 0.90200 0.82323 0.84179 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.19 10.22 -39.25 -0.40 -6.59 16 4 C 0.47 8.99 7.54 36.01 0.27 9.26 16 5 O -0.49 -10.80 14.91 -18.75 -0.28 -11.08 16 6 C 0.07 1.20 5.43 -4.97 -0.03 1.18 16 7 N -0.51 -9.98 4.29 -238.97 -1.03 -11.01 16 8 C 0.15 3.40 3.59 -4.98 -0.02 3.38 16 9 C -0.56 -13.94 7.88 -34.44 -0.27 -14.21 16 10 H 0.08 2.04 6.21 -52.49 -0.33 1.71 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 12 N -0.89 -25.18 13.96 55.43 0.77 -24.40 16 13 Si 0.86 20.74 27.37 -169.99 -4.65 16.09 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.26 -6.35 6.70 56.52 0.38 -5.97 16 17 C 0.09 1.44 4.30 -4.98 -0.02 1.42 16 18 C 0.02 0.27 4.60 -104.22 -0.48 -0.21 16 19 C -0.13 -2.08 8.74 -39.57 -0.35 -2.42 16 20 C 0.12 1.75 7.31 -39.28 -0.29 1.47 16 21 F -0.13 -2.05 17.26 2.25 0.04 -2.01 16 22 C -0.16 -1.86 10.01 -39.57 -0.40 -2.26 16 23 C -0.05 -0.58 9.75 -39.18 -0.38 -0.97 16 24 C -0.03 -0.41 5.73 -106.89 -0.61 -1.03 16 25 C 0.27 4.18 14.00 -22.39 -0.31 3.87 16 26 N -0.42 -7.26 18.55 41.93 0.78 -6.48 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 31 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.10 1.84 6.42 -51.93 -0.33 1.50 16 33 H 0.10 1.48 7.80 -51.93 -0.41 1.07 16 34 H 0.04 0.94 6.01 -51.93 -0.31 0.62 16 35 H 0.03 0.75 5.85 -51.93 -0.30 0.45 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.07 1.06 7.19 -51.93 -0.37 0.69 16 38 H 0.08 1.41 6.19 -51.93 -0.32 1.09 16 39 H 0.16 2.80 8.03 -52.49 -0.42 2.38 16 40 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -30.80 357.14 -6.67 -37.47 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.91 Total: 1.12 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.37 Total: 1.52 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.53 Total: -41.90 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.68 Total: -17.67 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.65 Total: 16.09 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.80 -6.67 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232893778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.765 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.72 seconds