Wall clock time and date at job start Tue Mar 31 2020 12:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.47150 * 2 1 4 4 C 1.34228 * 116.99904 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00275 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99638 * 180.02562 * 4 3 2 7 7 N 1.46907 * 109.46642 * 174.29058 * 6 4 3 8 8 C 1.46895 * 111.00201 * 287.79436 * 7 6 4 9 9 C 1.50700 * 109.47188 * 295.15818 * 8 7 6 10 10 H 1.08000 * 120.00389 * 5.34718 * 9 8 7 11 11 C 1.37879 * 119.99916 * 185.35481 * 9 8 7 12 12 N 1.31516 * 119.99917 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 120.00121 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47279 * 90.00648 * 13 11 9 15 15 H 1.48509 * 109.47229 * 210.00175 * 13 11 9 16 16 H 1.48507 * 109.47089 * 330.00171 * 13 11 9 17 17 C 1.46897 * 110.99599 * 163.84258 * 7 6 4 18 18 C 1.50699 * 109.47294 * 190.00136 * 17 7 6 19 19 C 1.37873 * 120.06323 * 259.73021 * 18 17 7 20 20 C 1.38619 * 120.12492 * 179.71995 * 19 18 17 21 21 F 1.35102 * 119.87484 * 180.27650 * 20 19 18 22 22 C 1.38662 * 120.25010 * 0.54551 * 20 19 18 23 23 C 1.37829 * 120.12591 * 359.73219 * 22 20 19 24 24 C 1.39666 * 120.06619 * 79.99516 * 18 17 7 25 25 C 1.43208 * 120.12237 * 0.02892 * 24 18 17 26 26 N 6.64112 * 139.57315 * 307.63528 * 2 1 3 27 27 H 1.09001 * 109.46823 * 300.00013 * 1 2 3 28 28 H 1.09006 * 109.46791 * 59.99837 * 1 2 3 29 29 H 1.08996 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46823 * 239.99987 * 2 1 3 31 31 H 1.08996 * 109.46800 * 120.00192 * 2 1 3 32 32 H 1.09005 * 109.47165 * 54.29477 * 6 4 3 33 33 H 1.08994 * 109.47595 * 294.29121 * 6 4 3 34 34 H 1.08998 * 109.47259 * 55.15478 * 8 7 6 35 35 H 1.08998 * 109.47164 * 175.15663 * 8 7 6 36 36 H 0.97003 * 120.00164 * 179.97438 * 12 11 9 37 37 H 1.09002 * 109.47438 * 310.00024 * 17 7 6 38 38 H 1.08998 * 109.47550 * 70.00310 * 17 7 6 39 39 H 1.08001 * 119.93746 * 359.97438 * 19 18 17 40 40 H 1.08002 * 119.94030 * 179.70024 * 22 20 19 41 41 H 1.08003 * 120.06195 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3814 2.8630 0.1395 8 6 5.7617 2.4674 1.5020 9 6 5.3383 3.5393 2.4730 10 1 4.7613 4.3841 2.1270 11 6 5.6877 3.4415 3.8032 12 7 5.3177 4.3767 4.6507 13 14 6.6853 1.9802 4.4019 14 1 8.1331 2.2946 4.3014 15 1 6.3388 1.6905 5.8167 16 1 6.3770 0.7936 3.5638 17 6 6.0109 4.1367 -0.2340 18 6 7.5044 3.9533 -0.3177 19 6 8.3095 4.3582 0.7258 20 6 9.6829 4.1849 0.6526 21 9 10.4665 4.5783 1.6804 22 6 10.2559 3.6142 -0.4738 23 6 9.4614 3.2110 -1.5253 24 6 8.0761 3.3780 -1.4547 25 6 7.2455 2.9613 -2.5443 26 7 6.5855 2.6298 -3.4105 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.5050 3.5022 0.8357 33 1 3.6693 3.4351 -0.9354 34 1 5.2693 1.5295 1.7589 35 1 6.8426 2.3365 1.5540 36 1 5.5632 4.3078 5.5866 37 1 5.6298 4.4602 -1.2026 38 1 5.7791 4.8909 0.5180 39 1 7.8690 4.8075 1.6035 40 1 11.3270 3.4860 -0.5275 41 1 9.9088 2.7670 -2.4023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232893778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:55 Heat of formation + Delta-G solvation = -85.207077 kcal Electronic energy + Delta-G solvation = -27012.281205 eV Core-core repulsion = 22999.635840 eV Total energy + Delta-G solvation = -4012.645365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.92126 -41.53321 -40.65916 -38.50142 -37.28809 -37.21595 -34.60383 -33.09292 -32.57327 -31.93171 -30.28235 -28.80671 -26.22192 -24.66710 -24.32783 -23.50659 -22.30695 -21.34692 -19.75474 -19.33743 -18.62664 -18.14601 -17.72537 -17.60776 -17.16199 -16.72553 -16.33326 -16.26916 -16.02618 -15.49757 -15.10286 -14.82578 -14.71897 -14.66743 -14.52315 -14.40515 -13.97802 -13.64667 -13.54948 -13.40395 -13.35027 -13.14736 -12.96979 -12.81912 -12.73894 -12.64584 -12.50162 -12.35449 -11.95662 -11.90647 -11.70729 -11.51100 -11.35988 -10.78204 -10.02392 -9.67560 -9.14119 -8.32591 -6.34853 -0.34779 0.20978 1.25795 1.28567 1.33660 1.43387 1.63832 1.71922 1.90092 2.30516 2.73093 2.94489 3.03807 3.15535 3.34348 3.66233 3.80987 3.83110 3.97976 4.09491 4.14416 4.21200 4.27813 4.32450 4.46265 4.51599 4.66128 4.81715 4.86307 4.90899 4.92427 4.96518 5.08247 5.09253 5.13455 5.16839 5.34454 5.45824 5.48386 5.78971 5.95214 6.10574 6.22950 6.55757 6.69399 6.85241 7.31987 8.81695 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010126 B = 0.005510 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.562108 B = 5080.365702 C = 7130.262257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.366 6.366 4 C 0.467 3.533 5 O -0.523 6.523 6 C 0.066 3.934 7 N -0.517 5.517 8 C 0.167 3.833 9 C -0.541 4.541 10 H 0.060 0.940 11 C 0.036 3.964 12 N -0.931 5.931 13 Si 0.913 3.087 14 H -0.261 1.261 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.090 3.910 18 C 0.003 3.997 19 C -0.149 4.149 20 C 0.113 3.887 21 F -0.143 7.143 22 C -0.141 4.141 23 C -0.030 4.030 24 C -0.035 4.035 25 C 0.286 3.714 26 N -0.455 5.455 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.013 0.987 35 H 0.031 0.969 36 H 0.266 0.734 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.129 0.871 40 H 0.180 0.820 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.460 -2.304 -11.704 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.283 6.283 4 C 0.310 3.690 5 O -0.411 6.411 6 C -0.063 4.063 7 N -0.241 5.241 8 C 0.040 3.960 9 C -0.579 4.579 10 H 0.078 0.922 11 C -0.164 4.164 12 N -0.571 5.571 13 Si 0.738 3.262 14 H -0.186 1.186 15 H -0.211 1.211 16 H -0.190 1.190 17 C -0.037 4.037 18 C 0.000 4.000 19 C -0.169 4.169 20 C 0.093 3.907 21 F -0.121 7.121 22 C -0.160 4.160 23 C -0.051 4.051 24 C -0.039 4.039 25 C -0.029 4.029 26 N -0.131 5.131 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.148 0.852 34 H 0.031 0.969 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.147 0.853 40 H 0.197 0.803 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.811 -3.440 -13.157 13.887 hybrid contribution 0.246 0.113 2.295 2.311 sum 3.057 -3.326 -10.862 11.764 Atomic orbital electron populations 1.21810 0.89925 1.04439 1.03736 1.23261 0.97395 0.79408 1.02065 1.86485 1.23992 1.33685 1.84145 1.23923 0.80508 0.93083 0.71471 1.90600 1.60960 1.43883 1.45693 1.21538 0.89663 0.89932 1.05183 1.62097 1.05715 1.29483 1.26794 1.19982 0.96366 0.94929 0.84716 1.21727 1.34874 1.08038 0.93295 0.92209 1.25453 0.96356 0.97439 0.97163 1.70002 1.47605 1.35285 1.04206 0.86220 0.80595 0.81621 0.77761 1.18566 1.21113 1.18990 1.21072 0.89812 0.91315 1.01516 1.19471 0.95155 0.93933 0.91432 1.21102 0.92283 1.03490 0.99992 1.18170 0.88101 0.98348 0.86058 1.91504 1.74133 1.88576 1.57933 1.21329 1.02939 1.00475 0.91254 1.21304 0.89501 0.94955 0.99291 1.16001 0.92423 1.05175 0.90283 1.25581 0.92520 0.92625 0.92142 1.81282 1.09079 1.09851 1.12867 0.91614 0.90817 0.87918 0.91292 0.92399 0.89737 0.85193 0.96910 0.95045 0.92519 0.88943 0.91953 0.85266 0.80311 0.80427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 10.29 71.98 0.74 -1.92 16 2 C 0.05 1.42 6.19 71.98 0.45 1.87 16 3 O -0.37 -12.30 10.22 -51.40 -0.53 -12.83 16 4 C 0.47 18.03 7.54 71.24 0.54 18.57 16 5 O -0.52 -23.20 14.91 21.98 0.33 -22.87 16 6 C 0.07 2.37 5.43 85.56 0.46 2.83 16 7 N -0.52 -20.13 4.29 -909.95 -3.91 -24.04 16 8 C 0.17 7.71 3.59 85.56 0.31 8.02 16 9 C -0.54 -27.68 7.88 25.60 0.20 -27.48 16 10 H 0.06 3.25 6.21 -2.91 -0.02 3.23 16 11 C 0.04 1.96 5.47 84.65 0.46 2.42 16 12 N -0.93 -54.14 13.96 21.45 0.30 -53.84 16 13 Si 0.91 43.31 27.37 68.60 1.88 45.19 16 14 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 15 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 16 H -0.27 -12.65 6.70 99.48 0.67 -11.99 16 17 C 0.09 2.99 4.30 85.56 0.37 3.36 16 18 C 0.00 0.10 4.60 -19.61 -0.09 0.01 16 19 C -0.15 -4.74 8.74 22.27 0.19 -4.54 16 20 C 0.11 3.04 7.31 22.46 0.16 3.21 16 21 F -0.14 -4.19 17.26 44.97 0.78 -3.41 16 22 C -0.14 -2.65 10.01 22.27 0.22 -2.43 16 23 C -0.03 -0.56 9.75 22.53 0.22 -0.34 16 24 C -0.03 -0.90 5.73 -21.33 -0.12 -1.02 16 25 C 0.29 8.24 14.00 88.31 1.24 9.47 16 26 N -0.45 -14.80 18.55 19.04 0.35 -14.45 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 31 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 32 H 0.08 3.29 6.42 -2.38 -0.02 3.27 16 33 H 0.13 3.80 7.80 -2.39 -0.02 3.78 16 34 H 0.01 0.66 6.01 -2.39 -0.01 0.64 16 35 H 0.03 1.46 5.85 -2.39 -0.01 1.45 16 36 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.09 2.66 7.19 -2.39 -0.02 2.64 16 38 H 0.06 2.29 6.19 -2.39 -0.01 2.28 16 39 H 0.13 4.83 8.03 -2.91 -0.02 4.80 16 40 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -68.39 357.14 5.59 -62.81 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.03 Total: 11.41 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 5.35 Total: 12.03 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -3.25 Total: -92.32 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.20 Total: -35.70 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.78 Total: -3.41 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -68.39 5.59 -62.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232893778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.402 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds