Wall clock time and date at job start Tue Mar 31 2020 12:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 120.00106 * 2 1 4 4 N 1.34775 * 119.99614 * 180.02562 * 2 1 3 5 5 C 1.39942 * 119.99572 * 174.79329 * 4 2 1 6 6 C 1.38989 * 120.00619 * 146.93680 * 5 4 2 7 7 C 1.38196 * 120.19070 * 180.27363 * 6 5 4 8 8 C 1.38050 * 120.20517 * 359.74924 * 7 6 5 9 9 C 1.39447 * 120.01125 * 359.97371 * 8 7 6 10 10 C 1.48215 * 120.09508 * 180.02562 * 9 8 7 11 11 C 1.39152 * 120.28089 * 123.35311 * 10 9 8 12 12 C 1.38327 * 120.10189 * 179.97438 * 11 10 9 13 13 C 1.38037 * 120.77450 * 359.97438 * 12 11 10 14 14 C 1.39122 * 120.23490 * 359.97438 * 13 12 11 15 15 N 1.38182 * 132.74079 * 179.97438 * 14 13 12 16 16 H 0.96998 * 124.70796 * 359.97438 * 15 14 13 17 17 C 1.35602 * 110.59275 * 179.97438 * 15 14 13 18 18 C 1.38991 * 109.24943 * 359.97438 * 17 15 14 19 19 C 1.40950 * 126.93075 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00228 * 158.28640 * 19 18 17 21 21 C 1.39696 * 119.99953 * 338.28628 * 19 18 17 22 22 N 1.31074 * 119.99757 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99964 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46995 * 60.00426 * 23 21 19 25 25 H 1.48506 * 109.47162 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47337 * 300.00104 * 23 21 19 27 27 C 1.40186 * 120.27491 * 303.06905 * 10 9 8 28 28 C 1.38624 * 120.00910 * 326.68013 * 5 4 2 29 29 H 1.09000 * 109.47236 * 270.00282 * 1 2 3 30 30 H 1.09007 * 109.46865 * 30.00140 * 1 2 3 31 31 H 1.08997 * 109.47570 * 150.00097 * 1 2 3 32 32 H 0.97000 * 120.00259 * 354.78781 * 4 2 1 33 33 H 1.07996 * 119.90358 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.89500 * 179.72003 * 7 6 5 35 35 H 1.07999 * 119.99461 * 179.97438 * 8 7 6 36 36 H 1.07999 * 119.95378 * 359.96839 * 11 10 9 37 37 H 1.08001 * 119.61211 * 179.97438 * 12 11 10 38 38 H 1.07999 * 119.88145 * 180.02562 * 13 12 11 39 39 H 1.07997 * 125.37122 * 179.97438 * 17 15 14 40 40 H 0.97004 * 120.00046 * 179.97438 * 22 21 19 41 41 H 1.07995 * 120.09837 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5759 -1.1697 -0.1105 6 6 4.3222 -2.1491 0.5341 7 6 5.7005 -2.1518 0.4327 8 6 6.3439 -1.1849 -0.3136 9 6 5.6031 -0.2017 -0.9686 10 6 6.2919 0.8369 -1.7708 11 6 5.9735 1.0119 -3.1141 12 6 6.6183 1.9827 -3.8592 13 6 7.5813 2.7889 -3.2865 14 6 7.9170 2.6347 -1.9452 15 7 8.8204 3.2821 -1.1241 16 1 9.4015 4.0062 -1.4049 17 6 8.7819 2.7647 0.1288 18 6 7.8380 1.7455 0.1748 19 6 7.4959 0.9580 1.2926 20 1 6.5415 0.4537 1.3262 21 6 8.3913 0.8298 2.3572 22 7 9.5499 1.4414 2.3162 23 14 7.9376 -0.2133 3.8388 24 1 7.6950 -1.6123 3.4037 25 1 9.0503 -0.1872 4.8220 26 1 6.7072 0.3297 4.4685 27 6 7.2655 1.6553 -1.1811 28 6 4.2134 -0.1984 -0.8668 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6988 -2.0056 0.0754 33 1 3.8240 -2.9073 1.1199 34 1 6.2760 -2.9124 0.9393 35 1 7.4211 -1.1900 -0.3902 36 1 5.2218 0.3887 -3.5757 37 1 6.3653 2.1114 -4.9012 38 1 8.0754 3.5427 -3.8816 39 1 9.3888 3.0929 0.9596 40 1 10.1715 1.3527 3.0556 41 1 3.6351 0.5612 -1.3715 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239530698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:35 Heat of formation + Delta-G solvation = 41.365091 kcal Electronic energy + Delta-G solvation = -26232.949195 eV Core-core repulsion = 22656.561636 eV Total energy + Delta-G solvation = -3576.387559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.25414 -39.66829 -37.99168 -35.77219 -34.56349 -33.36132 -31.74305 -30.70123 -29.61264 -28.14738 -28.07354 -27.47162 -24.66724 -22.90461 -22.38184 -20.66801 -20.61136 -20.01393 -19.36697 -17.69955 -16.79827 -16.20381 -15.77602 -15.64863 -15.30788 -15.16422 -14.46417 -14.29194 -14.10240 -13.87968 -13.23378 -13.18931 -12.93137 -12.80981 -12.74199 -12.45634 -12.42040 -11.98738 -11.47143 -11.24310 -11.20386 -11.08042 -11.02176 -10.77862 -10.48411 -10.29842 -10.14270 -9.72920 -9.64666 -9.53469 -9.12033 -8.52022 -7.95578 -7.59134 -7.02637 -6.40953 -6.39731 -3.90334 1.63356 1.91064 2.33490 2.66230 2.78895 3.16835 3.21477 3.21883 3.27185 4.15738 4.28146 4.37650 4.56056 4.72188 4.86230 5.03937 5.22993 5.31933 5.48525 5.58898 5.61480 5.66239 5.74889 5.98372 6.00017 6.07611 6.09524 6.14141 6.46121 6.51882 6.70199 6.71831 6.77966 6.90712 7.06085 7.20396 7.22751 7.29798 7.41371 7.53412 7.55284 7.60742 7.73341 7.81201 8.10681 8.25517 8.40265 8.74788 9.07155 9.21137 9.27134 10.61720 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.006088 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.159312 B = 4597.924245 C = 6499.389303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.501 3.499 3 O -0.517 6.517 4 N -0.673 5.673 5 C 0.124 3.876 6 C -0.152 4.152 7 C -0.111 4.111 8 C -0.075 4.075 9 C -0.005 4.005 10 C 0.004 3.996 11 C -0.170 4.170 12 C -0.117 4.117 13 C -0.148 4.148 14 C 0.085 3.915 15 N -0.592 5.592 16 H 0.394 0.606 17 C -0.077 4.077 18 C 0.026 3.974 19 C -0.418 4.418 20 H 0.078 0.922 21 C 0.062 3.938 22 N -0.838 5.838 23 Si 0.902 3.098 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.108 4.108 28 C -0.107 4.107 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.406 0.594 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.175 0.825 40 H 0.270 0.730 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.392 -6.229 -5.116 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.289 3.711 3 O -0.391 6.391 4 N -0.319 5.319 5 C 0.031 3.969 6 C -0.173 4.173 7 C -0.129 4.129 8 C -0.094 4.094 9 C -0.006 4.006 10 C 0.003 3.997 11 C -0.190 4.190 12 C -0.137 4.137 13 C -0.170 4.170 14 C -0.026 4.026 15 N -0.193 5.193 16 H 0.227 0.773 17 C -0.200 4.200 18 C 0.021 3.979 19 C -0.452 4.452 20 H 0.096 0.904 21 C -0.148 4.148 22 N -0.469 5.469 23 Si 0.729 3.271 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.115 4.115 28 C -0.127 4.127 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.241 0.759 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.192 0.808 40 H 0.081 0.919 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.726 -5.346 -4.881 12.940 hybrid contribution -0.034 -0.523 0.818 0.971 sum -10.760 -5.869 -4.064 12.913 Atomic orbital electron populations 1.21877 0.91317 1.04936 1.04799 1.20957 0.90666 0.83533 0.75993 1.90828 1.70303 1.31087 1.46889 1.43547 1.05595 1.09364 1.73404 1.17499 0.82022 0.98353 0.99006 1.20716 0.94271 1.00468 1.01809 1.20789 0.93366 0.99415 0.99375 1.21263 1.00493 0.92706 0.94918 1.18645 0.91742 0.93862 0.96341 1.18012 0.95074 0.94316 0.92302 1.20549 1.03313 1.01663 0.93469 1.20295 0.97886 0.97075 0.98400 1.19834 1.02208 1.02850 0.92106 1.18132 0.95179 0.97362 0.91944 1.41440 1.34916 1.32904 1.10060 0.77278 1.22691 1.10225 1.01509 0.85617 1.17981 0.95208 0.95137 0.89580 1.18777 1.02032 1.25227 0.99128 0.90440 1.25570 0.94360 0.95932 0.98959 1.69688 1.07195 1.38857 1.31204 0.86439 0.78480 0.81048 0.81182 1.19209 1.20937 1.19544 1.19425 0.98894 0.97750 0.95464 1.21071 0.93822 0.98843 0.98989 0.88833 0.88683 0.90161 0.75931 0.86680 0.86159 0.85236 0.87622 0.87412 0.88115 0.80824 0.91905 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.31 36.01 0.37 -0.98 16 2 C 0.50 6.90 7.68 -10.99 -0.08 6.81 16 3 O -0.52 -10.09 14.78 5.55 0.08 -10.01 16 4 N -0.67 -8.53 5.34 -9.89 -0.05 -8.58 16 5 C 0.12 2.08 6.28 -83.73 -0.53 1.55 16 6 C -0.15 -2.40 9.95 -39.32 -0.39 -2.79 16 7 C -0.11 -1.94 10.03 -39.67 -0.40 -2.34 16 8 C -0.08 -1.54 6.72 -39.20 -0.26 -1.80 16 9 C -0.01 -0.11 4.59 -104.94 -0.48 -0.59 16 10 C 0.00 0.08 5.41 -104.73 -0.57 -0.49 16 11 C -0.17 -3.37 9.62 -39.21 -0.38 -3.75 16 12 C -0.12 -2.18 10.00 -39.62 -0.40 -2.57 16 13 C -0.15 -2.91 10.06 -39.33 -0.40 -3.31 16 14 C 0.08 1.93 7.23 -83.91 -0.61 1.33 16 15 N -0.59 -13.08 5.99 -9.81 -0.06 -13.14 16 16 H 0.39 7.12 8.96 -40.82 -0.37 6.75 16 17 C -0.08 -1.96 10.77 -15.61 -0.17 -2.12 16 18 C 0.03 0.71 5.96 -104.83 -0.63 0.08 16 19 C -0.42 -11.38 7.57 -38.01 -0.29 -11.67 16 20 H 0.08 2.12 5.58 -52.49 -0.29 1.83 16 21 C 0.06 1.61 5.47 -17.33 -0.09 1.52 16 22 N -0.84 -22.25 10.80 55.54 0.60 -21.65 16 23 Si 0.90 20.21 29.56 -169.99 -5.02 15.19 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C -0.11 -2.71 6.07 -104.64 -0.64 -3.35 16 28 C -0.11 -2.12 8.24 -39.03 -0.32 -2.44 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.41 3.33 8.82 -40.82 -0.36 2.97 16 33 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 35 H 0.13 2.82 7.83 -52.49 -0.41 2.40 16 36 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.17 4.56 6.37 -52.49 -0.33 4.22 16 40 H 0.27 6.73 8.30 -40.82 -0.34 6.39 16 41 H 0.13 2.67 6.41 -52.49 -0.34 2.33 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -32.97 346.73 -10.09 -43.06 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -4.62 Total: 16.80 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -6.25 Total: -26.91 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.49 Total: -43.36 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.97 -10.09 -43.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239530698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.428 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds