Wall clock time and date at job start Tue Mar 31 2020 12:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 120.00106 * 2 1 4 4 N 1.34775 * 119.99614 * 180.02562 * 2 1 3 5 5 C 1.39942 * 119.99572 * 174.79329 * 4 2 1 6 6 C 1.38989 * 120.00619 * 146.93680 * 5 4 2 7 7 C 1.38196 * 120.19070 * 180.27363 * 6 5 4 8 8 C 1.38050 * 120.20517 * 359.74924 * 7 6 5 9 9 C 1.39447 * 120.01125 * 359.97371 * 8 7 6 10 10 C 1.48215 * 120.09508 * 180.02562 * 9 8 7 11 11 C 1.39152 * 120.28089 * 123.35311 * 10 9 8 12 12 C 1.38327 * 120.10189 * 179.97438 * 11 10 9 13 13 C 1.38037 * 120.77450 * 359.97438 * 12 11 10 14 14 C 1.39122 * 120.23490 * 359.97438 * 13 12 11 15 15 N 1.38182 * 132.74079 * 179.97438 * 14 13 12 16 16 H 0.96998 * 124.70796 * 359.97438 * 15 14 13 17 17 C 1.35602 * 110.59275 * 179.97438 * 15 14 13 18 18 C 1.38991 * 109.24943 * 359.97438 * 17 15 14 19 19 C 1.40950 * 126.93075 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00228 * 158.28640 * 19 18 17 21 21 C 1.39696 * 119.99953 * 338.28628 * 19 18 17 22 22 N 1.31074 * 119.99757 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99964 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46995 * 60.00426 * 23 21 19 25 25 H 1.48506 * 109.47162 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47337 * 300.00104 * 23 21 19 27 27 C 1.40186 * 120.27491 * 303.06905 * 10 9 8 28 28 C 1.38624 * 120.00910 * 326.68013 * 5 4 2 29 29 H 1.09000 * 109.47236 * 270.00282 * 1 2 3 30 30 H 1.09007 * 109.46865 * 30.00140 * 1 2 3 31 31 H 1.08997 * 109.47570 * 150.00097 * 1 2 3 32 32 H 0.97000 * 120.00259 * 354.78781 * 4 2 1 33 33 H 1.07996 * 119.90358 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.89500 * 179.72003 * 7 6 5 35 35 H 1.07999 * 119.99461 * 179.97438 * 8 7 6 36 36 H 1.07999 * 119.95378 * 359.96839 * 11 10 9 37 37 H 1.08001 * 119.61211 * 179.97438 * 12 11 10 38 38 H 1.07999 * 119.88145 * 180.02562 * 13 12 11 39 39 H 1.07997 * 125.37122 * 179.97438 * 17 15 14 40 40 H 0.97004 * 120.00046 * 179.97438 * 22 21 19 41 41 H 1.07995 * 120.09837 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5759 -1.1697 -0.1105 6 6 4.3222 -2.1491 0.5341 7 6 5.7005 -2.1518 0.4327 8 6 6.3439 -1.1849 -0.3136 9 6 5.6031 -0.2017 -0.9686 10 6 6.2919 0.8369 -1.7708 11 6 5.9735 1.0119 -3.1141 12 6 6.6183 1.9827 -3.8592 13 6 7.5813 2.7889 -3.2865 14 6 7.9170 2.6347 -1.9452 15 7 8.8204 3.2821 -1.1241 16 1 9.4015 4.0062 -1.4049 17 6 8.7819 2.7647 0.1288 18 6 7.8380 1.7455 0.1748 19 6 7.4959 0.9580 1.2926 20 1 6.5415 0.4537 1.3262 21 6 8.3913 0.8298 2.3572 22 7 9.5499 1.4414 2.3162 23 14 7.9376 -0.2133 3.8388 24 1 7.6950 -1.6123 3.4037 25 1 9.0503 -0.1872 4.8220 26 1 6.7072 0.3297 4.4685 27 6 7.2655 1.6553 -1.1811 28 6 4.2134 -0.1984 -0.8668 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6988 -2.0056 0.0754 33 1 3.8240 -2.9073 1.1199 34 1 6.2760 -2.9124 0.9393 35 1 7.4211 -1.1900 -0.3902 36 1 5.2218 0.3887 -3.5757 37 1 6.3653 2.1114 -4.9012 38 1 8.0754 3.5427 -3.8816 39 1 9.3888 3.0929 0.9596 40 1 10.1715 1.3527 3.0556 41 1 3.6351 0.5612 -1.3715 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239530698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:34 Heat of formation + Delta-G solvation = 21.287824 kcal Electronic energy + Delta-G solvation = -26233.819811 eV Core-core repulsion = 22656.561636 eV Total energy + Delta-G solvation = -3577.258175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64411 -41.21280 -39.37999 -37.39523 -35.92399 -35.20533 -33.28785 -31.81746 -31.25338 -29.71781 -29.38298 -29.10798 -26.56918 -24.39957 -23.74196 -22.25313 -22.19792 -21.32182 -21.17987 -19.17602 -17.98865 -17.78056 -17.50602 -17.09376 -16.90692 -16.42672 -16.09296 -15.95738 -15.48378 -15.14170 -14.87992 -14.67428 -14.47030 -14.32009 -14.22785 -13.69037 -13.35182 -13.14993 -13.11641 -12.96803 -12.91122 -12.61795 -12.54038 -12.47766 -12.07116 -11.94234 -11.82758 -11.40200 -11.21608 -11.01815 -10.83635 -10.14947 -9.53189 -8.98433 -8.75357 -8.35893 -8.21504 -5.90763 0.13302 0.49113 0.77823 1.01228 1.37289 1.39299 1.48482 1.67108 2.19354 2.27345 2.37542 2.85011 2.93109 3.18020 3.62680 3.78193 3.96659 4.11883 4.27276 4.31067 4.42072 4.49036 4.54560 4.62003 4.67527 4.70100 4.74738 4.80781 5.00986 5.03944 5.14184 5.27504 5.33552 5.40332 5.45296 5.50937 5.59845 5.65640 5.78302 5.83362 5.95320 6.07148 6.19862 6.27781 6.53732 6.56589 6.82809 7.20002 7.24261 7.24798 7.39941 8.67445 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.006088 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.159312 B = 4597.924245 C = 6499.389303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.494 3.506 3 O -0.584 6.584 4 N -0.657 5.657 5 C 0.128 3.872 6 C -0.140 4.140 7 C -0.112 4.112 8 C -0.096 4.096 9 C -0.027 4.027 10 C -0.018 4.018 11 C -0.170 4.170 12 C -0.105 4.105 13 C -0.150 4.150 14 C 0.072 3.928 15 N -0.586 5.586 16 H 0.411 0.589 17 C -0.090 4.090 18 C -0.011 4.011 19 C -0.438 4.438 20 H 0.066 0.934 21 C 0.020 3.980 22 N -0.865 5.865 23 Si 0.960 3.040 24 H -0.252 1.252 25 H -0.274 1.274 26 H -0.275 1.275 27 C -0.150 4.150 28 C -0.124 4.124 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.431 0.569 33 H 0.162 0.838 34 H 0.142 0.858 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.274 0.726 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.046 -8.114 -5.904 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.285 3.715 3 O -0.463 6.463 4 N -0.305 5.305 5 C 0.033 3.967 6 C -0.160 4.160 7 C -0.130 4.130 8 C -0.115 4.115 9 C -0.028 4.028 10 C -0.019 4.019 11 C -0.189 4.189 12 C -0.124 4.124 13 C -0.171 4.171 14 C -0.038 4.038 15 N -0.190 5.190 16 H 0.248 0.752 17 C -0.215 4.215 18 C -0.017 4.017 19 C -0.471 4.471 20 H 0.084 0.916 21 C -0.187 4.187 22 N -0.497 5.497 23 Si 0.784 3.216 24 H -0.176 1.176 25 H -0.199 1.199 26 H -0.201 1.201 27 C -0.157 4.157 28 C -0.144 4.144 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.271 0.729 33 H 0.179 0.821 34 H 0.160 0.840 35 H 0.118 0.882 36 H 0.146 0.854 37 H 0.172 0.828 38 H 0.155 0.845 39 H 0.178 0.822 40 H 0.084 0.916 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.405 -7.266 -5.701 16.279 hybrid contribution 0.675 0.055 0.903 1.129 sum -12.730 -7.211 -4.798 15.397 Atomic orbital electron populations 1.21907 0.86200 1.06808 1.06636 1.22115 0.92964 0.82502 0.73923 1.90814 1.72056 1.33482 1.49911 1.43514 1.03935 1.10673 1.72336 1.17638 0.84172 0.97295 0.97552 1.21116 0.93444 1.00604 1.00795 1.21086 0.94641 0.98875 0.98428 1.21101 0.99150 0.94357 0.96889 1.18706 0.92518 0.94165 0.97401 1.18416 0.95040 0.94659 0.93789 1.20950 1.03411 1.02032 0.92555 1.20858 0.96059 0.95159 1.00289 1.20276 1.02312 1.03666 0.90832 1.18578 0.95015 0.96951 0.93238 1.41242 1.35392 1.33385 1.08943 0.75250 1.22450 1.10246 1.02031 0.86757 1.18389 0.96431 0.95899 0.90937 1.18848 1.02010 1.26036 1.00220 0.91594 1.26308 0.94180 0.97013 1.01227 1.69776 1.07907 1.39937 1.32037 0.85545 0.78051 0.80112 0.77922 1.17622 1.19854 1.20074 1.19721 1.00834 0.99838 0.95281 1.20996 0.93181 0.99767 1.00487 0.86771 0.88789 0.86312 0.72918 0.82080 0.83997 0.88164 0.85413 0.82805 0.84460 0.82151 0.91613 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 10.31 71.24 0.73 -1.21 16 2 C 0.49 12.80 7.68 87.66 0.67 13.48 16 3 O -0.58 -23.18 14.78 -3.04 -0.04 -23.22 16 4 N -0.66 -14.93 5.34 -303.59 -1.62 -16.55 16 5 C 0.13 4.11 6.28 38.12 0.24 4.35 16 6 C -0.14 -4.06 9.95 22.44 0.22 -3.84 16 7 C -0.11 -3.85 10.03 22.22 0.22 -3.63 16 8 C -0.10 -4.11 6.72 22.52 0.15 -3.96 16 9 C -0.03 -1.21 4.59 -20.07 -0.09 -1.30 16 10 C -0.02 -0.87 5.41 -19.93 -0.11 -0.98 16 11 C -0.17 -6.67 9.62 22.51 0.22 -6.46 16 12 C -0.10 -3.64 10.00 22.24 0.22 -3.42 16 13 C -0.15 -5.64 10.06 22.43 0.23 -5.41 16 14 C 0.07 3.38 7.23 38.85 0.28 3.66 16 15 N -0.59 -26.86 5.99 -184.94 -1.11 -27.96 16 16 H 0.41 15.21 8.96 -92.71 -0.83 14.38 16 17 C -0.09 -4.90 10.77 84.29 0.91 -3.99 16 18 C -0.01 -0.63 5.96 -20.00 -0.12 -0.75 16 19 C -0.44 -25.26 7.57 23.29 0.18 -25.09 16 20 H 0.07 3.84 5.58 -2.91 -0.02 3.82 16 21 C 0.02 1.07 5.47 85.16 0.47 1.53 16 22 N -0.86 -48.08 10.80 21.79 0.24 -47.84 16 23 Si 0.96 42.34 29.56 68.60 2.03 44.37 16 24 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 27 C -0.15 -7.90 6.07 -19.88 -0.12 -8.02 16 28 C -0.12 -5.03 8.24 22.63 0.19 -4.84 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.43 5.23 8.82 -92.71 -0.82 4.41 16 33 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 34 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 35 H 0.10 4.75 7.83 -2.91 -0.02 4.73 16 36 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 37 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 38 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.16 9.02 6.37 -2.91 -0.02 9.00 16 40 H 0.27 14.14 8.30 -92.71 -0.77 13.37 16 41 H 0.11 4.85 6.41 -2.91 -0.02 4.83 16 Total: -1.00 -79.51 346.73 3.43 -76.08 By element: Atomic # 1 Polarization: 45.54 SS G_CDS: -0.55 Total: 44.99 kcal Atomic # 6 Polarization: -54.35 SS G_CDS: 4.49 Total: -49.86 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -2.49 Total: -92.35 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.04 Total: -23.22 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -79.51 3.43 -76.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239530698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.368 kcal (2) G-P(sol) polarization free energy of solvation -79.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds