Wall clock time and date at job start Tue Mar 31 2020 13:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00693 * 2 1 4 4 O 1.21557 * 119.99254 * 0.02562 * 3 2 1 5 5 C 1.47854 * 120.00423 * 179.97438 * 3 2 1 6 6 C 1.39673 * 120.08428 * 0.27380 * 5 3 2 7 7 C 1.38037 * 120.11899 * 180.25512 * 6 5 3 8 8 C 1.38133 * 120.28170 * 359.74784 * 7 6 5 9 9 C 1.39510 * 120.16507 * 359.97438 * 8 7 6 10 10 C 1.48215 * 120.06231 * 179.97438 * 9 8 7 11 11 C 1.39147 * 120.28254 * 123.41278 * 10 9 8 12 12 C 1.38326 * 120.10758 * 180.02562 * 11 10 9 13 13 C 1.38030 * 120.77329 * 0.02562 * 12 11 10 14 14 C 1.39129 * 120.23714 * 359.97438 * 13 12 11 15 15 N 1.38180 * 132.74920 * 180.02562 * 14 13 12 16 16 H 0.97003 * 124.69546 * 359.97438 * 15 14 13 17 17 C 1.35586 * 110.59600 * 179.97438 * 15 14 13 18 18 C 1.38994 * 109.25062 * 0.02562 * 17 15 14 19 19 C 1.40953 * 126.92923 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00192 * 158.21461 * 19 18 17 21 21 C 1.39687 * 120.00058 * 338.21115 * 19 18 17 22 22 N 1.31079 * 120.00206 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00239 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46851 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46763 * 119.99903 * 23 21 19 26 26 H 1.48492 * 109.47236 * 240.00099 * 23 21 19 27 27 C 1.40185 * 120.27779 * 303.14153 * 10 9 8 28 28 C 1.39207 * 119.87839 * 0.02562 * 9 8 7 29 29 H 1.09004 * 109.46871 * 300.00146 * 1 2 3 30 30 H 1.09002 * 109.47031 * 59.99714 * 1 2 3 31 31 H 1.08997 * 109.47382 * 180.02562 * 1 2 3 32 32 H 0.97009 * 119.99550 * 180.02562 * 2 1 3 33 33 H 1.08004 * 119.93989 * 359.97438 * 6 5 3 34 34 H 1.07997 * 119.85863 * 179.72452 * 7 6 5 35 35 H 1.08008 * 119.91585 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.94807 * 359.97438 * 11 10 9 37 37 H 1.08007 * 119.61427 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.88722 * 179.97438 * 13 12 11 39 39 H 1.08000 * 125.37342 * 179.97438 * 17 15 14 40 40 H 0.96997 * 120.00202 * 179.97438 * 22 21 19 41 41 H 1.07992 * 120.13661 * 179.97438 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6176 1.1671 0.0006 6 6 4.3176 -0.0415 -0.0047 7 6 5.6980 -0.0425 0.0012 8 6 6.3953 1.1499 0.0070 9 6 5.7080 2.3640 0.0064 10 6 6.4585 3.6420 0.0132 11 6 6.2483 4.5845 -0.9886 12 6 6.9511 5.7759 -0.9790 13 6 7.8668 6.0476 0.0174 14 6 8.0954 5.1218 1.0305 15 7 8.9311 5.1226 2.1308 16 1 9.5329 5.8460 2.3666 17 6 8.7935 3.9723 2.8352 18 6 7.8494 3.1640 2.2128 19 6 7.4199 1.8880 2.6301 20 1 6.4656 1.5049 2.3002 21 6 8.2287 1.1190 3.4701 22 7 9.3868 1.5841 3.8709 23 14 7.6592 -0.5719 4.0238 24 1 6.3261 -0.8617 3.4372 25 1 8.6333 -1.5959 3.5681 26 1 7.5658 -0.6022 5.5054 27 6 7.3821 3.9139 1.0322 28 6 4.3160 2.3728 0.0006 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.9500 -0.8402 -0.0004 33 1 3.7780 -0.9771 -0.0087 34 1 6.2351 -0.9795 0.0016 35 1 7.4754 1.1423 0.0120 36 1 5.5358 4.3852 -1.7755 37 1 6.7820 6.5017 -1.7608 38 1 8.4080 6.9823 0.0107 39 1 9.3329 3.7230 3.7370 40 1 9.9482 1.0503 4.4545 41 1 3.7798 3.3102 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240017008.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:04 Heat of formation + Delta-G solvation = 39.098696 kcal Electronic energy + Delta-G solvation = -25943.825239 eV Core-core repulsion = 22367.339401 eV Total energy + Delta-G solvation = -3576.485838 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.07999 -39.62897 -37.94334 -35.76156 -34.61543 -33.56181 -32.06337 -30.79401 -29.66899 -28.17809 -27.64394 -26.79749 -24.73607 -23.20047 -22.58615 -21.07382 -20.49036 -20.09764 -19.43598 -18.06410 -16.57730 -16.02236 -15.84818 -15.56875 -15.34766 -15.11829 -14.63767 -14.35772 -14.21002 -13.99685 -13.35346 -13.29541 -13.02597 -12.93873 -12.86953 -12.55114 -12.38545 -11.97772 -11.55621 -11.32343 -11.28177 -11.16439 -10.91210 -10.84858 -10.53829 -10.38112 -9.89925 -9.81991 -9.68353 -9.26010 -9.16848 -8.66720 -8.39260 -8.02916 -7.10983 -6.50115 -6.49905 -4.00510 1.25261 1.64364 2.21223 2.58355 3.04695 3.16723 3.19131 3.22150 3.25749 4.07180 4.19479 4.28092 4.48369 4.74514 4.86711 5.07050 5.17274 5.34294 5.40484 5.44357 5.51810 5.67111 5.68586 5.84489 5.92567 5.94969 6.03217 6.26463 6.36905 6.37752 6.41077 6.59467 6.63372 6.76348 6.87274 7.05285 7.11051 7.18403 7.27683 7.39697 7.47099 7.51455 7.61976 7.72201 8.01134 8.30640 8.31184 8.64738 8.97807 9.11805 9.17199 10.52492 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.005499 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.887570 B = 5090.269754 C = 7251.989496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.738 5.738 3 C 0.564 3.436 4 O -0.541 6.541 5 C -0.154 4.154 6 C -0.093 4.093 7 C -0.136 4.136 8 C -0.034 4.034 9 C -0.030 4.030 10 C -0.002 4.002 11 C -0.166 4.166 12 C -0.117 4.117 13 C -0.146 4.146 14 C 0.084 3.916 15 N -0.592 5.592 16 H 0.395 0.605 17 C -0.073 4.073 18 C 0.023 3.977 19 C -0.422 4.422 20 H 0.077 0.923 21 C 0.062 3.938 22 N -0.836 5.836 23 Si 0.899 3.101 24 H -0.261 1.261 25 H -0.278 1.278 26 H -0.279 1.279 27 C -0.109 4.109 28 C -0.047 4.047 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.401 0.599 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.175 0.825 40 H 0.270 0.730 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.188 -3.649 -6.777 10.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.390 5.390 3 C 0.353 3.647 4 O -0.419 6.419 5 C -0.157 4.157 6 C -0.112 4.112 7 C -0.154 4.154 8 C -0.053 4.053 9 C -0.030 4.030 10 C -0.002 4.002 11 C -0.187 4.187 12 C -0.136 4.136 13 C -0.167 4.167 14 C -0.026 4.026 15 N -0.193 5.193 16 H 0.228 0.772 17 C -0.197 4.197 18 C 0.018 3.982 19 C -0.455 4.455 20 H 0.095 0.905 21 C -0.148 4.148 22 N -0.467 5.467 23 Si 0.726 3.274 24 H -0.185 1.185 25 H -0.204 1.204 26 H -0.205 1.205 27 C -0.116 4.116 28 C -0.066 4.066 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.236 0.764 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.192 0.808 40 H 0.081 0.919 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.390 -2.978 -6.509 10.289 hybrid contribution 0.455 -0.957 0.606 1.221 sum -6.936 -3.935 -5.903 9.921 Atomic orbital electron populations 1.21500 0.79710 1.01931 1.02311 1.45718 1.07576 1.08853 1.76868 1.18437 0.87593 0.83396 0.75319 1.90747 1.70144 1.31229 1.49745 1.19567 0.91701 0.94609 1.09873 1.21102 0.94681 0.96051 0.99379 1.20945 0.93617 0.98379 1.02414 1.21520 1.01003 0.90970 0.91762 1.18747 0.91973 0.93235 0.99036 1.17968 0.95656 0.92161 0.94461 1.20603 1.03373 0.94736 0.99966 1.20319 0.97954 0.97071 0.98296 1.19868 1.02729 0.98320 0.95810 1.18132 0.96051 0.97010 0.91441 1.41452 1.36681 1.18473 1.22697 0.77201 1.22712 1.10031 0.85575 1.01348 1.17991 0.96039 0.93566 0.90618 1.18813 1.03552 0.98651 1.24511 0.90454 1.25577 0.94287 0.99381 0.95567 1.69695 1.09654 1.37621 1.29755 0.86358 0.79713 0.82513 0.78862 1.18492 1.20391 1.20476 1.19415 0.99101 0.95846 0.97239 1.21264 0.92955 0.97259 0.95152 0.92261 0.92304 0.90843 0.76412 0.86630 0.85812 0.84770 0.87364 0.87272 0.88031 0.80798 0.91906 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.70 59.85 0.64 1.49 16 2 N -0.74 -8.60 5.66 -68.04 -0.39 -8.98 16 3 C 0.56 9.07 7.77 -12.33 -0.10 8.98 16 4 O -0.54 -10.52 16.34 5.32 0.09 -10.43 16 5 C -0.15 -2.57 5.87 -105.01 -0.62 -3.19 16 6 C -0.09 -1.35 9.54 -39.12 -0.37 -1.73 16 7 C -0.14 -2.15 10.02 -39.69 -0.40 -2.55 16 8 C -0.03 -0.65 6.70 -39.15 -0.26 -0.91 16 9 C -0.03 -0.59 4.60 -104.96 -0.48 -1.07 16 10 C 0.00 -0.04 5.40 -104.73 -0.57 -0.61 16 11 C -0.17 -3.14 9.62 -39.21 -0.38 -3.52 16 12 C -0.12 -2.07 10.00 -39.63 -0.40 -2.47 16 13 C -0.15 -2.72 10.06 -39.33 -0.40 -3.12 16 14 C 0.08 1.83 7.23 -83.91 -0.61 1.22 16 15 N -0.59 -12.45 5.99 -9.81 -0.06 -12.51 16 16 H 0.39 6.77 8.96 -40.82 -0.37 6.41 16 17 C -0.07 -1.77 10.77 -15.61 -0.17 -1.94 16 18 C 0.02 0.59 5.96 -104.83 -0.62 -0.03 16 19 C -0.42 -10.81 7.56 -38.01 -0.29 -11.09 16 20 H 0.08 1.96 5.57 -52.49 -0.29 1.67 16 21 C 0.06 1.54 5.47 -17.33 -0.09 1.45 16 22 N -0.84 -21.29 10.81 55.54 0.60 -20.69 16 23 Si 0.90 19.05 29.56 -169.99 -5.02 14.02 16 24 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 C -0.11 -2.57 6.07 -104.64 -0.64 -3.21 16 28 C -0.05 -0.89 9.17 -38.81 -0.36 -1.24 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.40 3.56 6.86 -40.82 -0.28 3.28 16 33 H 0.12 1.22 6.39 -52.48 -0.34 0.88 16 34 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.13 2.68 7.81 -52.48 -0.41 2.26 16 36 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 37 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.18 4.38 6.37 -52.49 -0.33 4.04 16 40 H 0.27 6.43 8.30 -40.82 -0.34 6.09 16 41 H 0.13 2.51 7.65 -52.49 -0.40 2.11 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -30.60 346.76 -10.16 -40.77 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -4.51 Total: 16.12 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -6.10 Total: -23.53 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.16 Total: -42.18 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.60 -10.16 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240017008.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.866 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds