Wall clock time and date at job start Tue Mar 31 2020 13:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00693 * 2 1 4 4 O 1.21557 * 119.99254 * 0.02562 * 3 2 1 5 5 C 1.47854 * 120.00423 * 179.97438 * 3 2 1 6 6 C 1.39673 * 120.08428 * 0.27380 * 5 3 2 7 7 C 1.38037 * 120.11899 * 180.25512 * 6 5 3 8 8 C 1.38133 * 120.28170 * 359.74784 * 7 6 5 9 9 C 1.39510 * 120.16507 * 359.97438 * 8 7 6 10 10 C 1.48215 * 120.06231 * 179.97438 * 9 8 7 11 11 C 1.39147 * 120.28254 * 123.41278 * 10 9 8 12 12 C 1.38326 * 120.10758 * 180.02562 * 11 10 9 13 13 C 1.38030 * 120.77329 * 0.02562 * 12 11 10 14 14 C 1.39129 * 120.23714 * 359.97438 * 13 12 11 15 15 N 1.38180 * 132.74920 * 180.02562 * 14 13 12 16 16 H 0.97003 * 124.69546 * 359.97438 * 15 14 13 17 17 C 1.35586 * 110.59600 * 179.97438 * 15 14 13 18 18 C 1.38994 * 109.25062 * 0.02562 * 17 15 14 19 19 C 1.40953 * 126.92923 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00192 * 158.21461 * 19 18 17 21 21 C 1.39687 * 120.00058 * 338.21115 * 19 18 17 22 22 N 1.31079 * 120.00206 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00239 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46851 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46763 * 119.99903 * 23 21 19 26 26 H 1.48492 * 109.47236 * 240.00099 * 23 21 19 27 27 C 1.40185 * 120.27779 * 303.14153 * 10 9 8 28 28 C 1.39207 * 119.87839 * 0.02562 * 9 8 7 29 29 H 1.09004 * 109.46871 * 300.00146 * 1 2 3 30 30 H 1.09002 * 109.47031 * 59.99714 * 1 2 3 31 31 H 1.08997 * 109.47382 * 180.02562 * 1 2 3 32 32 H 0.97009 * 119.99550 * 180.02562 * 2 1 3 33 33 H 1.08004 * 119.93989 * 359.97438 * 6 5 3 34 34 H 1.07997 * 119.85863 * 179.72452 * 7 6 5 35 35 H 1.08008 * 119.91585 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.94807 * 359.97438 * 11 10 9 37 37 H 1.08007 * 119.61427 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.88722 * 179.97438 * 13 12 11 39 39 H 1.08000 * 125.37342 * 179.97438 * 17 15 14 40 40 H 0.96997 * 120.00202 * 179.97438 * 22 21 19 41 41 H 1.07992 * 120.13661 * 179.97438 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6176 1.1671 0.0006 6 6 4.3176 -0.0415 -0.0047 7 6 5.6980 -0.0425 0.0012 8 6 6.3953 1.1499 0.0070 9 6 5.7080 2.3640 0.0064 10 6 6.4585 3.6420 0.0132 11 6 6.2483 4.5845 -0.9886 12 6 6.9511 5.7759 -0.9790 13 6 7.8668 6.0476 0.0174 14 6 8.0954 5.1218 1.0305 15 7 8.9311 5.1226 2.1308 16 1 9.5329 5.8460 2.3666 17 6 8.7935 3.9723 2.8352 18 6 7.8494 3.1640 2.2128 19 6 7.4199 1.8880 2.6301 20 1 6.4656 1.5049 2.3002 21 6 8.2287 1.1190 3.4701 22 7 9.3868 1.5841 3.8709 23 14 7.6592 -0.5719 4.0238 24 1 6.3261 -0.8617 3.4372 25 1 8.6333 -1.5959 3.5681 26 1 7.5658 -0.6022 5.5054 27 6 7.3821 3.9139 1.0322 28 6 4.3160 2.3728 0.0006 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.9500 -0.8402 -0.0004 33 1 3.7780 -0.9771 -0.0087 34 1 6.2351 -0.9795 0.0016 35 1 7.4754 1.1423 0.0120 36 1 5.5358 4.3852 -1.7755 37 1 6.7820 6.5017 -1.7608 38 1 8.4080 6.9823 0.0107 39 1 9.3329 3.7230 3.7370 40 1 9.9482 1.0503 4.4545 41 1 3.7798 3.3102 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240017008.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:03 Heat of formation + Delta-G solvation = 21.286494 kcal Electronic energy + Delta-G solvation = -25944.597634 eV Core-core repulsion = 22367.339401 eV Total energy + Delta-G solvation = -3577.258233 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58180 -41.00928 -39.28945 -37.31581 -35.73575 -35.34051 -33.53440 -32.12256 -31.30270 -29.72186 -29.26967 -27.81110 -26.52499 -24.51817 -23.96137 -22.51896 -22.05586 -21.50385 -21.06933 -19.40232 -18.09709 -17.63746 -17.21969 -16.97803 -16.82755 -16.24812 -16.15417 -15.95104 -15.54150 -15.33215 -14.87398 -14.70405 -14.53768 -14.31562 -14.22546 -14.02110 -13.39719 -13.14780 -13.07549 -12.99414 -12.91470 -12.66262 -12.46959 -12.31869 -12.07030 -11.91808 -11.68485 -11.38501 -11.08741 -11.03314 -10.24101 -10.17751 -9.74231 -9.54328 -8.74883 -8.34158 -8.22851 -5.89877 -0.08281 0.21489 0.74043 1.01328 1.37909 1.43605 1.56521 1.89715 2.23251 2.29728 2.39584 2.85958 2.93725 3.16643 3.63458 3.77117 3.80202 4.05370 4.17691 4.29497 4.40283 4.45802 4.49383 4.60115 4.64292 4.64452 4.80562 4.91237 4.97755 4.99696 5.07941 5.23879 5.31246 5.37982 5.41134 5.45412 5.53527 5.61985 5.71289 5.82382 5.94401 6.02232 6.06239 6.28415 6.51335 6.57357 6.83579 7.18861 7.20813 7.26361 7.40269 8.69330 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.005499 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.887570 B = 5090.269754 C = 7251.989496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.717 5.717 3 C 0.560 3.440 4 O -0.584 6.584 5 C -0.158 4.158 6 C -0.075 4.075 7 C -0.134 4.134 8 C -0.050 4.050 9 C -0.049 4.049 10 C -0.019 4.019 11 C -0.168 4.168 12 C -0.106 4.106 13 C -0.148 4.148 14 C 0.072 3.928 15 N -0.586 5.586 16 H 0.411 0.589 17 C -0.089 4.089 18 C -0.011 4.011 19 C -0.438 4.438 20 H 0.072 0.928 21 C 0.019 3.981 22 N -0.865 5.865 23 Si 0.960 3.040 24 H -0.252 1.252 25 H -0.270 1.270 26 H -0.280 1.280 27 C -0.147 4.147 28 C -0.063 4.063 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.418 0.582 33 H 0.166 0.834 34 H 0.153 0.847 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.152 0.848 38 H 0.136 0.864 39 H 0.161 0.839 40 H 0.273 0.727 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.825 -5.283 -8.238 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.370 5.370 3 C 0.348 3.652 4 O -0.465 6.465 5 C -0.161 4.161 6 C -0.094 4.094 7 C -0.152 4.152 8 C -0.069 4.069 9 C -0.049 4.049 10 C -0.020 4.020 11 C -0.188 4.188 12 C -0.125 4.125 13 C -0.169 4.169 14 C -0.038 4.038 15 N -0.190 5.190 16 H 0.247 0.753 17 C -0.213 4.213 18 C -0.016 4.016 19 C -0.472 4.472 20 H 0.090 0.910 21 C -0.188 4.188 22 N -0.497 5.497 23 Si 0.784 3.216 24 H -0.175 1.175 25 H -0.195 1.195 26 H -0.206 1.206 27 C -0.153 4.153 28 C -0.083 4.083 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.256 0.744 33 H 0.184 0.816 34 H 0.171 0.829 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.170 0.830 38 H 0.154 0.846 39 H 0.178 0.822 40 H 0.083 0.917 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.027 -4.630 -7.986 12.911 hybrid contribution 0.873 -0.393 0.930 1.335 sum -8.154 -5.022 -7.056 11.895 Atomic orbital electron populations 1.21737 0.77999 1.04610 1.01588 1.45622 1.08680 1.08102 1.74557 1.18424 0.87334 0.84084 0.75329 1.90727 1.70712 1.33018 1.52052 1.19767 0.92429 0.94693 1.09248 1.21542 0.94173 0.97109 0.96553 1.21292 0.94465 0.98294 1.01099 1.21436 1.00041 0.92093 0.93324 1.18758 0.92367 0.93170 1.00583 1.18315 0.95563 0.93572 0.94517 1.20977 1.03460 0.94759 0.99578 1.20845 0.96109 0.97046 0.98463 1.20278 1.02965 0.98898 0.94760 1.18562 0.95855 0.97322 0.92070 1.41269 1.37157 1.18131 1.22429 0.75305 1.22477 1.10321 0.87000 1.01538 1.18389 0.97020 0.94276 0.91955 1.18927 1.03626 0.99256 1.25358 0.91021 1.26333 0.94267 1.02750 0.95406 1.69792 1.10579 1.38910 1.30446 0.85427 0.79728 0.78368 0.78099 1.17507 1.19466 1.20615 1.19676 1.00983 0.96796 0.97874 1.21187 0.92584 0.97867 0.96616 0.93320 0.92776 0.86438 0.74445 0.81649 0.82930 0.87138 0.85425 0.83043 0.84630 0.82241 0.91684 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.70 127.77 1.37 2.69 16 2 N -0.72 -14.41 5.66 -487.46 -2.76 -17.17 16 3 C 0.56 17.23 7.77 86.79 0.67 17.90 16 4 O -0.58 -22.71 16.34 -3.89 -0.06 -22.77 16 5 C -0.16 -5.09 5.87 -20.12 -0.12 -5.21 16 6 C -0.08 -1.96 9.54 22.57 0.22 -1.75 16 7 C -0.13 -4.01 10.02 22.20 0.22 -3.79 16 8 C -0.05 -1.94 6.70 22.55 0.15 -1.78 16 9 C -0.05 -1.98 4.60 -20.09 -0.09 -2.08 16 10 C -0.02 -0.84 5.40 -19.93 -0.11 -0.94 16 11 C -0.17 -6.23 9.62 22.51 0.22 -6.01 16 12 C -0.11 -3.49 10.00 22.24 0.22 -3.27 16 13 C -0.15 -5.28 10.06 22.43 0.23 -5.05 16 14 C 0.07 3.18 7.23 38.85 0.28 3.46 16 15 N -0.59 -25.46 5.99 -184.93 -1.11 -26.57 16 16 H 0.41 14.39 8.96 -92.71 -0.83 13.56 16 17 C -0.09 -4.56 10.77 84.29 0.91 -3.65 16 18 C -0.01 -0.59 5.96 -20.00 -0.12 -0.70 16 19 C -0.44 -23.44 7.56 23.29 0.18 -23.27 16 20 H 0.07 3.79 5.57 -2.91 -0.02 3.77 16 21 C 0.02 0.99 5.47 85.16 0.47 1.46 16 22 N -0.87 -45.83 10.81 21.79 0.24 -45.60 16 23 Si 0.96 39.30 29.56 68.60 2.03 41.32 16 24 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 25 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 26 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 27 C -0.15 -7.20 6.07 -19.88 -0.12 -7.32 16 28 C -0.06 -2.43 9.17 22.77 0.21 -2.22 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.42 5.43 6.86 -92.70 -0.64 4.79 16 33 H 0.17 2.57 6.39 -2.91 -0.02 2.55 16 34 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 35 H 0.11 4.68 7.81 -2.91 -0.02 4.66 16 36 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 37 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 38 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 39 H 0.16 8.57 6.37 -2.91 -0.02 8.55 16 40 H 0.27 13.43 8.30 -92.71 -0.77 12.66 16 41 H 0.12 4.66 7.65 -2.91 -0.02 4.64 16 Total: -1.00 -71.60 346.76 2.74 -68.85 By element: Atomic # 1 Polarization: 43.83 SS G_CDS: -0.37 Total: 43.46 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 4.78 Total: -41.54 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -3.63 Total: -89.33 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.06 Total: -22.77 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.32 kcal Total: -71.60 2.74 -68.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240017008.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.139 kcal (2) G-P(sol) polarization free energy of solvation -71.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds