Wall clock time and date at job start Tue Mar 31 2020 12:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21285 * 119.99678 * 2 1 4 4 N 1.34779 * 120.00416 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00216 * 180.02562 * 4 2 1 6 6 C 1.50693 * 109.46807 * 179.97438 * 5 4 2 7 7 C 1.38382 * 119.85758 * 90.00388 * 6 5 4 8 8 C 1.37947 * 120.14419 * 179.97438 * 7 6 5 9 9 C 1.39581 * 119.85685 * 0.02562 * 8 7 6 10 10 C 1.48025 * 120.14451 * 179.97438 * 9 8 7 11 11 C 1.39971 * 119.49712 * 359.97438 * 10 9 8 12 12 C 1.36015 * 121.19310 * 179.75858 * 11 10 9 13 13 C 1.41038 * 120.10476 * 0.51997 * 12 11 10 14 14 C 1.40458 * 120.49070 * 179.76310 * 13 12 11 15 15 H 1.07994 * 120.00014 * 205.21927 * 14 13 12 16 16 C 1.40308 * 119.99589 * 25.22531 * 14 13 12 17 17 N 1.30635 * 120.00126 * 17.04432 * 16 14 13 18 18 Si 1.86803 * 119.99683 * 197.04917 * 16 14 13 19 19 H 1.48501 * 109.46957 * 265.17863 * 18 16 14 20 20 H 1.48499 * 109.47185 * 25.17981 * 18 16 14 21 21 H 1.48499 * 109.47002 * 145.17657 * 18 16 14 22 22 C 1.46645 * 119.02168 * 359.48730 * 13 12 11 23 23 C 1.43204 * 120.56299 * 180.22518 * 22 13 12 24 24 N 9.75392 * 124.47152 * 154.68479 * 5 1 2 25 25 C 1.39087 * 118.86704 * 0.25343 * 22 13 12 26 26 C 1.39588 * 119.71266 * 0.25388 * 9 8 7 27 27 C 1.37945 * 119.85781 * 359.44906 * 26 9 8 28 28 H 1.08996 * 109.47436 * 270.00185 * 1 2 3 29 29 H 1.09006 * 109.46989 * 30.00397 * 1 2 3 30 30 H 1.08997 * 109.46962 * 149.99776 * 1 2 3 31 31 H 0.96998 * 119.99298 * 359.97438 * 4 2 1 32 32 H 1.08999 * 109.47203 * 59.99733 * 5 4 2 33 33 H 1.09001 * 109.46733 * 299.99992 * 5 4 2 34 34 H 1.07999 * 119.92959 * 359.97438 * 7 6 5 35 35 H 1.07995 * 120.07066 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.40365 * 0.04046 * 11 10 9 37 37 H 1.07996 * 119.94763 * 180.28378 * 12 11 10 38 38 H 0.97000 * 119.99590 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.09729 * 180.02562 * 25 22 13 40 40 H 1.07999 * 120.07022 * 179.72379 * 26 9 8 41 41 H 1.07993 * 119.93247 * 180.27553 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1482 -2.5879 0.0022 7 6 4.3784 -3.2382 -1.1974 8 6 4.8387 -4.5386 -1.2032 9 6 5.0718 -5.1986 0.0044 10 6 5.5651 -6.5943 0.0055 11 6 5.7949 -7.2450 -1.2122 12 6 6.2527 -8.5252 -1.2514 13 6 6.4949 -9.2270 -0.0522 14 6 6.9629 -10.5509 -0.0833 15 1 6.7697 -11.2116 0.7489 16 6 7.6816 -11.0149 -1.1954 17 7 8.2030 -10.1635 -2.0378 18 14 7.8925 -12.8504 -1.4715 19 1 9.1862 -13.2926 -0.8918 20 1 6.7796 -13.5810 -0.8136 21 1 7.8794 -13.1364 -2.9286 22 6 6.2566 -8.5519 1.2276 23 6 6.4962 -9.2316 2.4651 24 7 6.6876 -9.7700 3.4475 25 6 5.7935 -7.2404 1.2191 26 6 4.8320 -4.5390 1.2109 27 6 4.3776 -3.2365 1.2030 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6959 -2.0072 0.0013 32 1 4.0089 -0.6530 0.8911 33 1 4.0095 -0.6535 -0.8889 34 1 4.1973 -2.7265 -2.1311 35 1 5.0183 -5.0448 -2.1401 36 1 5.6096 -6.7196 -2.1374 37 1 6.4274 -9.0064 -2.2023 38 1 8.6995 -10.4843 -2.8068 39 1 5.6117 -6.7241 2.1501 40 1 5.0061 -5.0457 2.1486 41 1 4.1960 -2.7235 2.1358 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240151076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:48 Heat of formation + Delta-G solvation = 15.517495 kcal Electronic energy + Delta-G solvation = -24067.764270 eV Core-core repulsion = 20490.255875 eV Total energy + Delta-G solvation = -3577.508395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.87320 -39.06678 -37.66231 -35.38307 -35.02504 -34.22806 -32.03493 -30.98471 -30.43301 -29.85105 -29.04814 -26.56687 -24.57197 -23.24481 -21.91432 -21.34326 -20.75542 -20.29970 -18.02138 -17.36833 -17.17076 -16.39480 -15.85647 -15.62295 -15.38428 -14.91096 -14.65105 -14.16924 -13.81992 -13.63306 -13.40921 -13.11083 -13.01911 -12.94066 -12.82871 -12.79875 -12.39930 -12.14187 -12.10172 -11.97411 -11.76434 -11.54976 -11.40939 -11.06554 -11.02082 -10.74241 -10.67482 -10.14001 -10.09094 -9.82520 -9.70645 -9.22675 -8.78298 -8.67167 -7.91556 -7.47177 -7.27469 -4.87139 1.26599 1.71904 2.09330 2.47663 2.54711 2.80089 2.83831 2.90989 3.26613 3.53714 3.77929 3.90473 4.27644 4.38560 4.62774 4.79860 4.98296 4.99608 5.12288 5.17249 5.23282 5.31431 5.40349 5.50986 5.54300 5.66456 5.69310 5.83234 5.91689 6.07135 6.25717 6.31718 6.35859 6.47794 6.64036 6.67851 6.70044 6.80344 6.96535 7.07298 7.23810 7.36582 7.44845 7.50363 7.64974 7.71680 8.03936 8.05654 8.20630 8.37192 8.68888 9.51314 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.002290 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.548172 B =12224.806686 C =12934.240249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.554 6.554 4 N -0.724 5.724 5 C 0.168 3.832 6 C -0.157 4.157 7 C -0.088 4.088 8 C -0.145 4.145 9 C 0.035 3.965 10 C -0.211 4.211 11 C -0.055 4.055 12 C -0.166 4.166 13 C 0.154 3.846 14 C -0.411 4.411 15 H 0.090 0.910 16 C 0.073 3.927 17 N -0.749 5.749 18 Si 0.918 3.082 19 H -0.263 1.263 20 H -0.254 1.254 21 H -0.268 1.268 22 C -0.188 4.188 23 C 0.298 3.702 24 N -0.505 5.505 25 C 0.003 3.997 26 C -0.149 4.149 27 C -0.088 4.088 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.403 0.597 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.294 0.706 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 9.814 -3.360 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.432 6.432 4 N -0.376 5.376 5 C 0.045 3.955 6 C -0.158 4.158 7 C -0.107 4.107 8 C -0.163 4.163 9 C 0.034 3.966 10 C -0.212 4.212 11 C -0.074 4.074 12 C -0.185 4.185 13 C 0.148 3.852 14 C -0.437 4.437 15 H 0.108 0.892 16 C -0.153 4.153 17 N -0.370 5.370 18 Si 0.740 3.260 19 H -0.188 1.188 20 H -0.177 1.177 21 H -0.192 1.192 22 C -0.193 4.193 23 C -0.012 4.012 24 N -0.183 5.183 25 C -0.018 4.018 26 C -0.167 4.167 27 C -0.106 4.106 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.237 0.763 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.139 0.861 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.597 9.763 -2.063 13.171 hybrid contribution -0.002 -1.004 -0.599 1.169 sum -8.599 8.759 -2.662 12.560 Atomic orbital electron populations 1.21883 0.91846 1.04803 1.04719 1.20844 0.90603 0.83541 0.75654 1.90720 1.70902 1.31511 1.50068 1.46316 1.07525 1.08756 1.75042 1.20102 0.79326 0.93665 1.02412 1.19572 1.06948 0.95464 0.93776 1.20854 0.98372 0.94651 0.96789 1.21200 1.02522 0.94640 0.97980 1.19006 0.92310 0.92892 0.92354 1.17784 1.17154 0.93184 0.93118 1.20519 0.96538 0.94779 0.95546 1.20921 1.04591 0.94794 0.98200 1.18527 0.86013 0.91626 0.89040 1.19914 1.25242 0.96483 1.02028 0.89217 1.26225 0.93105 1.01692 0.94230 1.69704 1.19776 1.37650 1.09822 0.86090 0.80479 0.80395 0.79024 1.18791 1.17690 1.19205 1.16781 1.21872 0.94251 0.86443 1.25764 0.91284 0.91956 0.92160 1.81061 1.14421 1.10268 1.12599 1.20632 0.93042 0.91897 0.96212 1.21205 1.02815 0.94728 0.97956 1.20845 0.98378 0.94601 0.96799 0.88928 0.89016 0.90157 0.76252 0.91186 0.91135 0.86771 0.85907 0.88300 0.85570 0.89398 0.87830 0.86113 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.30 36.00 0.37 -0.70 16 2 C 0.51 5.32 7.94 -10.99 -0.09 5.24 16 3 O -0.55 -8.32 17.10 5.55 0.09 -8.23 16 4 N -0.72 -6.87 5.55 -61.48 -0.34 -7.21 16 5 C 0.17 1.84 5.79 -5.20 -0.03 1.81 16 6 C -0.16 -1.88 5.26 -104.51 -0.55 -2.43 16 7 C -0.09 -1.10 9.68 -39.63 -0.38 -1.48 16 8 C -0.15 -2.10 9.42 -39.19 -0.37 -2.47 16 9 C 0.03 0.56 5.88 -104.88 -0.62 -0.05 16 10 C -0.21 -3.93 5.88 -104.81 -0.62 -4.55 16 11 C -0.05 -1.05 9.30 -39.73 -0.37 -1.42 16 12 C -0.17 -3.54 8.63 -39.32 -0.34 -3.88 16 13 C 0.15 3.50 5.73 -104.61 -0.60 2.90 16 14 C -0.41 -9.41 8.55 -37.97 -0.32 -9.73 16 15 H 0.09 2.08 7.39 -52.49 -0.39 1.69 16 16 C 0.07 1.53 5.16 -17.28 -0.09 1.45 16 17 N -0.75 -16.00 10.96 55.57 0.61 -15.39 16 18 Si 0.92 16.02 29.60 -169.99 -5.03 10.99 16 19 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 20 H -0.25 -4.49 7.11 56.52 0.40 -4.09 16 21 H -0.27 -4.47 7.11 56.52 0.40 -4.06 16 22 C -0.19 -4.08 5.93 -104.26 -0.62 -4.70 16 23 C 0.30 6.69 14.30 -22.46 -0.32 6.37 16 24 N -0.50 -11.69 18.54 41.86 0.78 -10.92 16 25 C 0.00 0.06 9.12 -38.85 -0.35 -0.30 16 26 C -0.15 -2.18 9.42 -39.19 -0.37 -2.55 16 27 C -0.09 -1.11 9.68 -39.63 -0.38 -1.49 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.40 3.07 8.46 -40.82 -0.35 2.72 16 32 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.12 1.67 6.13 -52.49 -0.32 1.35 16 36 H 0.10 1.65 6.09 -52.49 -0.32 1.33 16 37 H 0.13 2.72 6.19 -52.49 -0.32 2.39 16 38 H 0.29 5.59 8.29 -40.82 -0.34 5.25 16 39 H 0.10 1.79 6.13 -52.49 -0.32 1.46 16 40 H 0.12 1.69 6.15 -52.49 -0.32 1.36 16 41 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 360.57 15.07 5.43 5.43 Total: -1.00 -26.74 360.57 -8.94 -35.68 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -4.43 Total: 7.63 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -6.05 Total: -17.98 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 1.04 Total: -33.52 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 16.02 SS G_CDS: -5.03 Total: 10.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -26.74 -8.94 -35.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240151076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.194 kcal (2) G-P(sol) polarization free energy of solvation -26.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds