Wall clock time and date at job start Tue Mar 31 2020 12:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21285 * 119.99678 * 2 1 4 4 N 1.34779 * 120.00416 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00216 * 180.02562 * 4 2 1 6 6 C 1.50693 * 109.46807 * 179.97438 * 5 4 2 7 7 C 1.38382 * 119.85758 * 90.00388 * 6 5 4 8 8 C 1.37947 * 120.14419 * 179.97438 * 7 6 5 9 9 C 1.39581 * 119.85685 * 0.02562 * 8 7 6 10 10 C 1.48025 * 120.14451 * 179.97438 * 9 8 7 11 11 C 1.39971 * 119.49712 * 359.97438 * 10 9 8 12 12 C 1.36015 * 121.19310 * 179.75858 * 11 10 9 13 13 C 1.41038 * 120.10476 * 0.51997 * 12 11 10 14 14 C 1.40458 * 120.49070 * 179.76310 * 13 12 11 15 15 H 1.07994 * 120.00014 * 205.21927 * 14 13 12 16 16 C 1.40308 * 119.99589 * 25.22531 * 14 13 12 17 17 N 1.30635 * 120.00126 * 17.04432 * 16 14 13 18 18 Si 1.86803 * 119.99683 * 197.04917 * 16 14 13 19 19 H 1.48501 * 109.46957 * 265.17863 * 18 16 14 20 20 H 1.48499 * 109.47185 * 25.17981 * 18 16 14 21 21 H 1.48499 * 109.47002 * 145.17657 * 18 16 14 22 22 C 1.46645 * 119.02168 * 359.48730 * 13 12 11 23 23 C 1.43204 * 120.56299 * 180.22518 * 22 13 12 24 24 N 9.75392 * 124.47152 * 154.68479 * 5 1 2 25 25 C 1.39087 * 118.86704 * 0.25343 * 22 13 12 26 26 C 1.39588 * 119.71266 * 0.25388 * 9 8 7 27 27 C 1.37945 * 119.85781 * 359.44906 * 26 9 8 28 28 H 1.08996 * 109.47436 * 270.00185 * 1 2 3 29 29 H 1.09006 * 109.46989 * 30.00397 * 1 2 3 30 30 H 1.08997 * 109.46962 * 149.99776 * 1 2 3 31 31 H 0.96998 * 119.99298 * 359.97438 * 4 2 1 32 32 H 1.08999 * 109.47203 * 59.99733 * 5 4 2 33 33 H 1.09001 * 109.46733 * 299.99992 * 5 4 2 34 34 H 1.07999 * 119.92959 * 359.97438 * 7 6 5 35 35 H 1.07995 * 120.07066 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.40365 * 0.04046 * 11 10 9 37 37 H 1.07996 * 119.94763 * 180.28378 * 12 11 10 38 38 H 0.97000 * 119.99590 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.09729 * 180.02562 * 25 22 13 40 40 H 1.07999 * 120.07022 * 179.72379 * 26 9 8 41 41 H 1.07993 * 119.93247 * 180.27553 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1482 -2.5879 0.0022 7 6 4.3784 -3.2382 -1.1974 8 6 4.8387 -4.5386 -1.2032 9 6 5.0718 -5.1986 0.0044 10 6 5.5651 -6.5943 0.0055 11 6 5.7949 -7.2450 -1.2122 12 6 6.2527 -8.5252 -1.2514 13 6 6.4949 -9.2270 -0.0522 14 6 6.9629 -10.5509 -0.0833 15 1 6.7697 -11.2116 0.7489 16 6 7.6816 -11.0149 -1.1954 17 7 8.2030 -10.1635 -2.0378 18 14 7.8925 -12.8504 -1.4715 19 1 9.1862 -13.2926 -0.8918 20 1 6.7796 -13.5810 -0.8136 21 1 7.8794 -13.1364 -2.9286 22 6 6.2566 -8.5519 1.2276 23 6 6.4962 -9.2316 2.4651 24 7 6.6876 -9.7700 3.4475 25 6 5.7935 -7.2404 1.2191 26 6 4.8320 -4.5390 1.2109 27 6 4.3776 -3.2365 1.2030 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6959 -2.0072 0.0013 32 1 4.0089 -0.6530 0.8911 33 1 4.0095 -0.6535 -0.8889 34 1 4.1973 -2.7265 -2.1311 35 1 5.0183 -5.0448 -2.1401 36 1 5.6096 -6.7196 -2.1374 37 1 6.4274 -9.0064 -2.2023 38 1 8.6995 -10.4843 -2.8068 39 1 5.6117 -6.7241 2.1501 40 1 5.0061 -5.0457 2.1486 41 1 4.1960 -2.7235 2.1358 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240151076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:47 Heat of formation + Delta-G solvation = 3.062582 kcal Electronic energy + Delta-G solvation = -24068.304355 eV Core-core repulsion = 20490.255875 eV Total energy + Delta-G solvation = -3578.048481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.83699 -40.21575 -39.09686 -37.03691 -36.32150 -35.53145 -33.24978 -32.24762 -31.47576 -31.25370 -30.11570 -27.85689 -25.79250 -24.62980 -23.30019 -22.62248 -21.62661 -21.54997 -19.59611 -18.82281 -18.06482 -17.36349 -17.25034 -16.62776 -16.57368 -16.08417 -15.90563 -15.43397 -15.19776 -14.72173 -14.62725 -14.51631 -14.32525 -14.26914 -13.78828 -13.76842 -13.59394 -13.49393 -13.37903 -13.29117 -13.10700 -12.87971 -12.83778 -12.49697 -12.35427 -12.01349 -11.93155 -11.62009 -11.30193 -11.24343 -11.00839 -10.12722 -10.09169 -9.73816 -9.51533 -8.99051 -8.75078 -6.52294 0.05459 0.45709 0.64044 1.11605 1.35925 1.47598 1.53738 1.68332 2.00230 2.10640 2.28494 2.49401 2.63006 3.13447 3.53492 3.69883 3.77649 3.97466 4.03300 4.15897 4.23037 4.32571 4.41605 4.54239 4.55436 4.67950 4.70891 4.77705 4.83287 4.90938 5.05444 5.13478 5.17665 5.19499 5.27268 5.44457 5.46023 5.48692 5.64565 5.74586 5.88512 5.88781 6.07148 6.17446 6.23229 6.41967 6.57504 6.62145 6.75408 6.93704 7.28909 7.99756 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.002290 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.548172 B =12224.806686 C =12934.240249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.502 3.498 3 O -0.605 6.605 4 N -0.715 5.715 5 C 0.170 3.830 6 C -0.135 4.135 7 C -0.087 4.087 8 C -0.144 4.144 9 C 0.003 3.997 10 C -0.197 4.197 11 C -0.052 4.052 12 C -0.181 4.181 13 C 0.133 3.867 14 C -0.450 4.450 15 H 0.073 0.927 16 C 0.044 3.956 17 N -0.774 5.774 18 Si 0.978 3.022 19 H -0.265 1.265 20 H -0.261 1.261 21 H -0.250 1.250 22 C -0.210 4.210 23 C 0.304 3.696 24 N -0.527 5.527 25 C -0.004 4.004 26 C -0.150 4.150 27 C -0.088 4.088 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.415 0.585 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.304 0.696 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.101 11.699 -4.250 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.292 3.708 3 O -0.486 6.486 4 N -0.368 5.368 5 C 0.047 3.953 6 C -0.136 4.136 7 C -0.106 4.106 8 C -0.162 4.162 9 C 0.003 3.997 10 C -0.199 4.199 11 C -0.071 4.071 12 C -0.200 4.200 13 C 0.127 3.873 14 C -0.476 4.476 15 H 0.091 0.909 16 C -0.178 4.178 17 N -0.396 5.396 18 Si 0.798 3.202 19 H -0.190 1.190 20 H -0.185 1.185 21 H -0.173 1.173 22 C -0.216 4.216 23 C -0.005 4.005 24 N -0.207 5.207 25 C -0.024 4.024 26 C -0.168 4.168 27 C -0.107 4.107 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.251 0.749 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.217 11.639 -2.955 15.766 hybrid contribution 0.360 -1.219 -0.325 1.312 sum -9.856 10.420 -3.280 14.713 Atomic orbital electron populations 1.21899 0.88275 1.06128 1.06126 1.21608 0.92280 0.82716 0.74232 1.90703 1.72216 1.33252 1.52475 1.46222 1.06886 1.09298 1.74355 1.20004 0.80379 0.92655 1.02300 1.19723 1.04812 0.95549 0.93482 1.21086 0.97530 0.93934 0.98009 1.21343 1.01909 0.95352 0.97577 1.18972 0.94881 0.91961 0.93870 1.18102 1.14857 0.94399 0.92498 1.20814 0.95203 0.94067 0.97010 1.20917 1.05828 0.95787 0.97474 1.18801 0.86498 0.92081 0.89901 1.19947 1.27794 0.96921 1.02944 0.90904 1.26821 0.92302 1.05175 0.93551 1.69693 1.20312 1.39121 1.10444 0.85219 0.79699 0.75672 0.79609 1.18961 1.18519 1.17345 1.16984 1.23434 0.95314 0.85872 1.25986 0.90766 0.91549 0.92158 1.81029 1.15564 1.10826 1.13309 1.20847 0.92895 0.91092 0.97579 1.21325 1.02413 0.95491 0.97564 1.21056 0.97711 0.93881 0.98038 0.87340 0.88912 0.87637 0.74855 0.91502 0.91298 0.84443 0.85248 0.85706 0.86245 0.88397 0.85912 0.85881 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.30 71.24 0.73 -0.76 16 2 C 0.50 9.28 7.94 87.66 0.70 9.97 16 3 O -0.60 -17.33 17.10 -3.04 -0.05 -17.38 16 4 N -0.72 -11.26 5.55 -466.80 -2.59 -13.84 16 5 C 0.17 3.21 5.79 85.63 0.50 3.71 16 6 C -0.14 -2.76 5.26 -19.79 -0.10 -2.86 16 7 C -0.09 -1.86 9.68 22.23 0.22 -1.64 16 8 C -0.14 -3.73 9.42 22.52 0.21 -3.52 16 9 C 0.00 0.10 5.88 -20.03 -0.12 -0.01 16 10 C -0.20 -7.18 5.88 -19.99 -0.12 -7.29 16 11 C -0.05 -1.96 9.30 22.17 0.21 -1.76 16 12 C -0.18 -7.88 8.63 22.44 0.19 -7.68 16 13 C 0.13 6.28 5.73 -19.86 -0.11 6.17 16 14 C -0.45 -21.66 8.55 23.31 0.20 -21.46 16 15 H 0.07 3.61 7.39 -2.91 -0.02 3.59 16 16 C 0.04 1.92 5.16 85.37 0.44 2.36 16 17 N -0.77 -33.83 10.96 21.89 0.24 -33.59 16 18 Si 0.98 33.49 29.60 68.60 2.03 35.52 16 19 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 20 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 21 H -0.25 -7.76 7.11 99.48 0.71 -7.05 16 22 C -0.21 -9.42 5.93 -19.63 -0.12 -9.54 16 23 C 0.30 14.14 14.30 88.33 1.26 15.41 16 24 N -0.53 -25.20 18.54 19.01 0.35 -24.85 16 25 C 0.00 -0.14 9.12 22.75 0.21 0.07 16 26 C -0.15 -4.01 9.42 22.53 0.21 -3.80 16 27 C -0.09 -1.94 9.68 22.24 0.22 -1.73 16 28 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.41 4.69 8.46 -92.71 -0.78 3.91 16 32 H 0.07 1.35 8.08 -2.39 -0.02 1.34 16 33 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 34 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.13 3.14 6.13 -2.91 -0.02 3.12 16 36 H 0.13 3.95 6.09 -2.91 -0.02 3.93 16 37 H 0.12 5.29 6.19 -2.91 -0.02 5.27 16 38 H 0.30 11.67 8.29 -92.71 -0.77 10.90 16 39 H 0.12 4.17 6.13 -2.91 -0.02 4.15 16 40 H 0.12 3.19 6.15 -2.91 -0.02 3.18 16 41 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -59.99 360.57 5.01 -54.97 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.31 Total: 23.54 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 4.72 Total: -24.38 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -2.00 Total: -72.28 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.05 Total: -17.38 kcal Atomic # 14 Polarization: 33.49 SS G_CDS: 2.03 Total: 35.52 kcal Total: -59.99 5.01 -54.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240151076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.037 kcal (2) G-P(sol) polarization free energy of solvation -59.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds