Wall clock time and date at job start Tue Mar 31 2020 12:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21287 * 120.00016 * 2 1 4 4 N 1.34772 * 119.99979 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99791 * 179.97438 * 4 2 1 6 6 C 1.50708 * 109.47106 * 179.97438 * 5 4 2 7 7 C 1.38403 * 119.93116 * 269.98369 * 6 5 4 8 8 C 1.38363 * 120.28892 * 180.02562 * 7 6 5 9 9 C 1.37970 * 120.13732 * 359.72234 * 8 7 6 10 10 C 1.39554 * 119.85805 * 0.55041 * 9 8 7 11 11 C 1.48032 * 120.14321 * 179.72361 * 10 9 8 12 12 C 1.39973 * 119.49742 * 179.72804 * 11 10 9 13 13 C 1.36016 * 121.19036 * 179.97438 * 12 11 10 14 14 C 1.41037 * 120.10956 * 0.02562 * 13 12 11 15 15 C 1.40449 * 120.49165 * 179.97438 * 14 13 12 16 16 H 1.07993 * 120.00267 * 154.64057 * 15 14 13 17 17 C 1.40314 * 119.99866 * 334.64044 * 15 14 13 18 18 N 1.30626 * 120.00101 * 334.62127 * 17 15 14 19 19 Si 1.86802 * 119.99894 * 154.61574 * 17 15 14 20 20 H 1.48494 * 109.46816 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47167 * 300.00127 * 19 17 15 22 22 H 1.48500 * 109.46695 * 60.00374 * 19 17 15 23 23 C 1.46645 * 119.01837 * 0.23209 * 14 13 12 24 24 C 1.43194 * 120.56303 * 179.72388 * 23 14 13 25 25 N 9.71775 * 123.99909 * 206.97855 * 5 1 2 26 26 C 1.39092 * 118.86991 * 359.50777 * 23 14 13 27 27 C 1.37922 * 119.92438 * 89.99903 * 6 5 4 28 28 H 1.08998 * 109.47207 * 269.99989 * 1 2 3 29 29 H 1.09002 * 109.47329 * 29.99755 * 1 2 3 30 30 H 1.09000 * 109.47321 * 149.99473 * 1 2 3 31 31 H 0.96993 * 119.99932 * 0.02562 * 4 2 1 32 32 H 1.09003 * 109.47068 * 60.00122 * 5 4 2 33 33 H 1.08997 * 109.47378 * 300.00240 * 5 4 2 34 34 H 1.07999 * 119.85539 * 0.04341 * 7 6 5 35 35 H 1.07995 * 119.93326 * 180.02562 * 8 7 6 36 36 H 1.08005 * 120.06729 * 180.30074 * 9 8 7 37 37 H 1.08001 * 119.40696 * 0.02562 * 12 11 10 38 38 H 1.08004 * 119.94500 * 179.97438 * 13 12 11 39 39 H 0.97005 * 120.00436 * 354.17876 * 18 17 15 40 40 H 1.07999 * 120.10048 * 180.20510 * 26 23 14 41 41 H 1.08001 * 120.07172 * 359.96389 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1671 -0.0011 6 6 4.1482 -2.5880 -0.0010 7 6 4.3792 -3.2387 1.1985 8 6 4.8410 -4.5430 1.2073 9 6 5.0687 -5.2052 0.0185 10 6 4.8432 -4.5529 -1.1944 11 6 5.0912 -5.2554 -2.4736 12 6 4.8551 -4.5901 -3.6823 13 6 5.0718 -5.2024 -4.8774 14 6 5.5423 -6.5314 -4.9164 15 6 5.7683 -7.1716 -6.1459 16 1 6.4799 -7.9814 -6.2104 17 6 5.0695 -6.7589 -7.2906 18 7 3.9082 -6.1730 -7.1710 19 14 5.8001 -7.0474 -8.9854 20 1 4.8727 -6.5230 -10.0199 21 1 7.1043 -6.3447 -9.0885 22 1 6.0042 -8.5033 -9.1951 23 6 5.7866 -7.2369 -3.6542 24 6 6.2587 -8.5888 -3.6553 25 7 6.6321 -9.6583 -3.6639 26 6 5.5562 -6.5691 -2.4561 27 6 4.3771 -3.2369 -1.1963 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6958 -2.0071 -0.0013 32 1 4.0095 -0.6535 0.8889 33 1 4.0088 -0.6531 -0.8910 34 1 4.1980 -2.7262 2.1318 35 1 5.0189 -5.0453 2.1466 36 1 5.4245 -6.2249 0.0267 37 1 4.4952 -3.5720 -3.6657 38 1 4.8825 -4.6702 -5.7979 39 1 3.4899 -6.0986 -6.2990 40 1 5.7328 -7.0685 -1.5150 41 1 4.1961 -2.7282 -2.1316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240351094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:51 Heat of formation + Delta-G solvation = 10.267326 kcal Electronic energy + Delta-G solvation = -24425.947422 eV Core-core repulsion = 20848.211363 eV Total energy + Delta-G solvation = -3577.736060 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.90138 -39.13160 -37.84621 -35.45939 -35.16944 -34.44811 -31.91131 -31.48858 -30.28210 -29.68228 -28.80918 -25.85349 -25.59969 -23.00342 -22.34896 -21.37505 -20.74757 -20.07020 -18.64249 -17.49938 -16.82132 -16.50277 -16.06599 -15.73727 -15.11492 -14.97063 -14.54199 -14.29943 -14.08863 -13.65063 -13.52090 -13.15911 -13.05321 -12.97246 -12.81043 -12.62048 -12.51288 -12.41671 -12.12310 -12.04089 -11.83691 -11.50004 -11.35417 -11.12645 -10.95325 -10.72788 -10.63458 -10.13276 -10.02187 -9.98777 -9.55577 -9.22550 -8.93924 -8.68190 -8.14401 -7.81308 -7.46864 -4.96964 1.29267 1.51974 1.99389 2.49573 2.52398 2.92279 2.99802 3.12812 3.24114 3.64213 3.71952 3.81827 4.21116 4.31168 4.60926 4.74491 4.94479 5.02090 5.13182 5.14473 5.14618 5.21076 5.30703 5.45883 5.53763 5.61998 5.68560 5.73602 5.78001 5.93687 6.18476 6.25233 6.31336 6.44669 6.49162 6.66424 6.71065 6.76892 6.85813 7.11266 7.15166 7.27259 7.35537 7.37689 7.47017 7.59559 7.71431 8.07012 8.11744 8.22807 8.60618 9.43525 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.002982 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.506888 B = 9386.427190 C =11100.706092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.553 6.553 4 N -0.724 5.724 5 C 0.162 3.838 6 C -0.103 4.103 7 C -0.140 4.140 8 C -0.110 4.110 9 C -0.138 4.138 10 C 0.023 3.977 11 C -0.219 4.219 12 C -0.036 4.036 13 C -0.216 4.216 14 C 0.128 3.872 15 C -0.456 4.456 16 H 0.088 0.912 17 C 0.035 3.965 18 N -0.750 5.750 19 Si 1.066 2.934 20 H -0.267 1.267 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.189 4.189 24 C 0.297 3.703 25 N -0.501 5.501 26 C 0.011 3.989 27 C -0.124 4.124 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.404 0.596 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.308 0.692 40 H 0.105 0.895 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 7.919 9.236 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.295 3.705 3 O -0.431 6.431 4 N -0.376 5.376 5 C 0.040 3.960 6 C -0.103 4.103 7 C -0.158 4.158 8 C -0.128 4.128 9 C -0.156 4.156 10 C 0.023 3.977 11 C -0.220 4.220 12 C -0.055 4.055 13 C -0.235 4.235 14 C 0.122 3.878 15 C -0.482 4.482 16 H 0.106 0.894 17 C -0.192 4.192 18 N -0.370 5.370 19 Si 0.887 3.113 20 H -0.191 1.191 21 H -0.192 1.192 22 H -0.195 1.195 23 C -0.194 4.194 24 C -0.013 4.013 25 N -0.179 5.179 26 C -0.009 4.009 27 C -0.142 4.142 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.238 0.762 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.856 7.329 7.612 11.629 hybrid contribution -0.112 -0.333 1.743 1.778 sum -4.968 6.996 9.355 12.694 Atomic orbital electron populations 1.21882 0.91730 1.04972 1.04663 1.20839 0.90628 0.83454 0.75573 1.90722 1.70884 1.31480 1.49986 1.46224 1.07295 1.08881 1.75210 1.20181 0.79613 0.93498 1.02747 1.19613 1.02101 0.94900 0.93698 1.20834 1.02955 0.95285 0.96767 1.20951 0.99441 0.94685 0.97698 1.21268 1.02327 1.00130 0.91845 1.18881 0.93663 0.92486 0.92719 1.17700 1.18143 0.95255 0.90941 1.20455 0.95401 0.97668 0.91951 1.20784 1.10786 0.94854 0.97116 1.18505 0.87998 0.90806 0.90488 1.20985 1.18783 1.14933 0.93465 0.89360 1.27463 0.94008 0.91355 1.06422 1.70406 1.11428 1.22984 1.32147 0.83591 0.76959 0.78350 0.72363 1.19097 1.19197 1.19460 1.16695 1.21454 0.87305 0.93959 1.25581 0.91502 0.92550 0.91673 1.80912 1.14478 1.13027 1.09504 1.20672 0.92324 0.92832 0.95113 1.21093 1.01416 0.94586 0.97110 0.88961 0.88924 0.90061 0.76184 0.90960 0.90759 0.86909 0.86619 0.86196 0.88173 0.86693 0.87730 0.87695 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.30 36.00 0.37 -0.80 16 2 C 0.51 5.63 7.94 -10.99 -0.09 5.54 16 3 O -0.55 -8.59 17.10 5.55 0.09 -8.49 16 4 N -0.72 -7.29 5.55 -61.47 -0.34 -7.63 16 5 C 0.16 1.86 5.79 -5.19 -0.03 1.83 16 6 C -0.10 -1.27 5.24 -104.67 -0.55 -1.81 16 7 C -0.14 -1.64 9.69 -39.47 -0.38 -2.03 16 8 C -0.11 -1.35 10.03 -39.63 -0.40 -1.75 16 9 C -0.14 -1.98 9.42 -39.19 -0.37 -2.35 16 10 C 0.02 0.36 5.88 -104.88 -0.62 -0.26 16 11 C -0.22 -4.02 5.88 -104.81 -0.62 -4.64 16 12 C -0.04 -0.67 9.30 -39.73 -0.37 -1.04 16 13 C -0.22 -4.54 7.88 -39.32 -0.31 -4.85 16 14 C 0.13 2.88 5.46 -104.61 -0.57 2.31 16 15 C -0.46 -10.51 8.48 -37.97 -0.32 -10.83 16 16 H 0.09 2.08 7.45 -52.49 -0.39 1.69 16 17 C 0.03 0.76 4.95 -17.28 -0.09 0.67 16 18 N -0.75 -16.75 12.30 55.57 0.68 -16.07 16 19 Si 1.07 18.62 30.01 -169.99 -5.10 13.52 16 20 H -0.27 -4.60 7.11 56.52 0.40 -4.19 16 21 H -0.27 -4.50 7.11 56.52 0.40 -4.10 16 22 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 23 C -0.19 -4.08 5.93 -104.27 -0.62 -4.70 16 24 C 0.30 6.67 14.29 -22.58 -0.32 6.34 16 25 N -0.50 -11.60 18.52 41.72 0.77 -10.82 16 26 C 0.01 0.22 9.12 -38.84 -0.35 -0.13 16 27 C -0.12 -1.76 9.07 -39.19 -0.36 -2.11 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 3.32 8.46 -40.82 -0.35 2.97 16 32 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.64 6.15 -52.48 -0.32 1.32 16 37 H 0.10 1.66 6.09 -52.49 -0.32 1.34 16 38 H 0.12 2.45 6.48 -52.48 -0.34 2.11 16 39 H 0.31 6.97 6.68 -40.82 -0.27 6.70 16 40 H 0.11 1.78 6.13 -52.49 -0.32 1.46 16 41 H 0.12 1.69 6.13 -52.49 -0.32 1.36 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -26.79 359.75 -8.84 -35.63 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.38 Total: 9.04 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -5.99 Total: -20.60 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 1.12 Total: -34.52 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.10 Total: 13.52 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -26.79 -8.84 -35.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240351094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.902 kcal (2) G-P(sol) polarization free energy of solvation -26.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds