Wall clock time and date at job start Tue Mar 31 2020 12:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.46862 * 2 1 4 4 C 1.35515 * 117.00009 * 179.97438 * 3 2 1 5 5 N 1.32177 * 119.79605 * 0.28937 * 4 3 2 6 6 C 1.31940 * 121.79630 * 180.33451 * 5 4 3 7 7 C 1.38312 * 121.17000 * 359.65849 * 6 5 4 8 8 C 1.38402 * 119.44575 * 0.02562 * 7 6 5 9 9 C 1.39886 * 118.35452 * 359.97438 * 8 7 6 10 10 C 1.47769 * 120.58890 * 179.97438 * 9 8 7 11 11 N 1.31631 * 119.45530 * 228.25056 * 10 9 8 12 12 C 1.33645 * 121.74337 * 179.97438 * 11 10 9 13 13 C 1.40487 * 120.98827 * 180.02562 * 12 11 10 14 14 C 1.36250 * 119.70527 * 179.97438 * 13 12 11 15 15 C 1.39159 * 121.75893 * 0.02562 * 14 13 12 16 16 C 1.36126 * 121.46580 * 0.02562 * 15 14 13 17 17 C 1.40793 * 119.46896 * 359.96195 * 16 15 14 18 18 C 1.40020 * 121.39168 * 180.29915 * 17 16 15 19 19 C 1.40369 * 117.97240 * 180.23631 * 18 17 16 20 20 C 1.40811 * 120.41537 * 179.78894 * 19 18 17 21 21 H 1.07999 * 120.00561 * 208.46495 * 20 19 18 22 22 C 1.40092 * 120.00010 * 28.46616 * 20 19 18 23 23 N 1.30774 * 120.00175 * 197.23606 * 22 20 19 24 24 Si 1.86805 * 120.00208 * 17.23133 * 22 20 19 25 25 H 1.48502 * 109.47050 * 264.82426 * 24 22 20 26 26 H 1.48504 * 109.46792 * 24.82298 * 24 22 20 27 27 H 1.48500 * 109.47346 * 144.82026 * 24 22 20 28 28 H 1.08995 * 109.47547 * 299.99870 * 1 2 3 29 29 H 1.09002 * 109.46937 * 60.00234 * 1 2 3 30 30 H 1.09003 * 109.46500 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47547 * 240.00130 * 2 1 3 32 32 H 1.08995 * 109.46934 * 119.99351 * 2 1 3 33 33 H 1.08001 * 119.41429 * 179.68761 * 6 5 4 34 34 H 1.08002 * 120.27467 * 180.02562 * 7 6 5 35 35 H 1.08002 * 120.82276 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.14661 * 359.96200 * 13 12 11 37 37 H 1.07998 * 119.11773 * 180.02562 * 14 13 12 38 38 H 1.08001 * 119.27190 * 179.97438 * 15 14 13 39 39 H 1.08006 * 120.27026 * 179.97438 * 16 15 14 40 40 H 1.07997 * 121.01533 * 0.02562 * 18 17 16 41 41 H 0.96993 * 119.99705 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3497 1.5250 0.0005 5 7 4.1512 0.4739 -0.0048 6 6 5.4644 0.6010 0.0021 7 6 6.0629 1.8480 0.0081 8 6 5.2708 2.9829 0.0075 9 6 3.8811 2.8231 0.0002 10 6 2.9887 4.0009 -0.0002 11 7 1.9854 4.0531 0.8502 12 6 1.1507 5.0961 0.8898 13 6 0.0851 5.1355 1.8044 14 6 -0.7497 6.2122 1.8225 15 6 -0.5791 7.2859 0.9539 16 6 0.4325 7.3095 0.0433 17 6 1.3290 6.2260 -0.0243 18 6 2.3872 6.2111 -0.9411 19 6 3.2348 5.0922 -0.9500 20 6 4.3124 5.0214 -1.8537 21 1 4.6677 4.0608 -2.1962 22 6 4.9236 6.1970 -2.3085 23 7 5.6772 6.1711 -3.3769 24 14 4.6620 7.8018 -1.3888 25 1 3.5522 8.5595 -2.0211 26 1 4.3195 7.5110 0.0266 27 1 5.9063 8.6107 -1.4409 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 6.0830 -0.2842 0.0025 34 1 7.1394 1.9352 0.0133 35 1 5.7146 3.9675 0.0118 36 1 -0.0717 4.3160 2.4900 37 1 -1.5656 6.2328 2.5298 38 1 -1.2650 8.1188 1.0027 39 1 0.5466 8.1527 -0.6219 40 1 2.5445 7.0337 -1.6229 41 1 6.1006 6.9850 -3.6916 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240492635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:19 Heat of formation + Delta-G solvation = 37.301803 kcal Electronic energy + Delta-G solvation = -26335.067097 eV Core-core repulsion = 22758.503340 eV Total energy + Delta-G solvation = -3576.563757 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.19732 -39.02472 -37.53211 -36.18279 -34.21248 -32.36408 -32.25363 -31.73763 -30.12723 -29.74460 -28.31546 -25.62655 -24.14510 -23.68852 -22.00261 -21.80274 -21.28657 -20.82420 -18.28092 -18.04089 -16.69984 -16.59660 -16.17124 -15.87395 -15.61879 -14.82848 -14.69414 -13.91441 -13.75523 -13.59773 -13.45754 -13.31219 -13.06171 -12.84152 -12.66549 -12.36533 -12.30096 -12.11771 -12.01398 -11.73095 -11.36415 -11.22011 -11.14488 -10.80796 -10.69097 -10.44957 -10.35813 -10.11376 -9.71742 -9.32213 -9.26676 -9.15222 -8.36967 -8.08966 -7.52336 -7.31949 -7.25843 -4.75592 1.13831 1.67606 1.80308 1.95000 2.88685 2.99320 3.06782 3.21332 3.46917 3.67161 3.74616 4.25916 4.52201 4.65027 5.02689 5.20422 5.22869 5.29523 5.37117 5.45572 5.47809 5.55716 5.56085 5.69117 5.72150 5.89394 5.96401 6.03212 6.04196 6.06141 6.12496 6.23058 6.35074 6.50493 6.51725 6.66052 6.80802 6.84940 6.93036 7.05876 7.14789 7.23139 7.42404 7.54744 7.68599 7.76956 7.93796 8.19207 8.28130 8.35892 9.06018 9.65352 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009171 B = 0.006944 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.347838 B = 4031.497754 C = 6478.767738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.067 3.933 3 O -0.283 6.283 4 C 0.337 3.663 5 N -0.550 5.550 6 C 0.127 3.873 7 C -0.216 4.216 8 C -0.009 4.009 9 C -0.074 4.074 10 C 0.146 3.854 11 N -0.433 5.433 12 C 0.024 3.976 13 C -0.051 4.051 14 C -0.183 4.183 15 C -0.104 4.104 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.262 4.262 19 C 0.061 3.939 20 C -0.404 4.404 21 H 0.102 0.898 22 C 0.083 3.917 23 N -0.778 5.778 24 Si 0.913 3.087 25 H -0.266 1.266 26 H -0.240 1.240 27 H -0.287 1.287 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.152 0.848 34 H 0.134 0.866 35 H 0.148 0.852 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -4.920 4.866 7.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.189 6.189 4 C 0.157 3.843 5 N -0.274 5.274 6 C -0.029 4.029 7 C -0.237 4.237 8 C -0.035 4.035 9 C -0.078 4.078 10 C -0.013 4.013 11 N -0.139 5.139 12 C -0.096 4.096 13 C -0.070 4.070 14 C -0.203 4.203 15 C -0.122 4.122 16 C -0.167 4.167 17 C -0.020 4.020 18 C -0.287 4.287 19 C 0.055 3.945 20 C -0.431 4.431 21 H 0.120 0.880 22 C -0.141 4.141 23 N -0.399 5.399 24 Si 0.739 3.261 25 H -0.192 1.192 26 H -0.163 1.163 27 H -0.215 1.215 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.169 0.831 34 H 0.152 0.848 35 H 0.166 0.834 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.714 -6.100 5.277 8.510 hybrid contribution 0.543 2.067 -0.581 2.214 sum -2.171 -4.033 4.696 6.560 Atomic orbital electron populations 1.21772 0.93494 1.02065 1.03475 1.22497 0.94573 0.82122 1.01729 1.86398 1.16507 1.28940 1.87014 1.19858 0.83972 0.88949 0.91499 1.67256 1.06546 1.32913 1.20729 1.22281 0.89170 0.97097 0.94344 1.21821 1.01083 0.93098 1.07687 1.21653 0.91161 1.00007 0.90681 1.18399 0.92971 0.89764 1.06633 1.20585 0.93544 0.93526 0.93688 1.67486 1.02086 1.23307 1.20984 1.19304 0.98534 0.91799 1.00009 1.20520 0.92882 0.97228 0.96363 1.20282 1.01779 0.95681 1.02544 1.20505 0.97752 0.97846 0.96120 1.20830 0.97019 0.98161 1.00706 1.19519 0.94555 0.93543 0.94420 1.20981 0.99428 1.02205 1.06078 1.19263 0.93205 0.90975 0.91048 1.19589 1.10688 0.95830 1.17025 0.87968 1.26318 0.92822 1.01468 0.93482 1.69635 1.21375 1.31992 1.16854 0.86214 0.77250 0.79534 0.83094 1.19164 1.16325 1.21477 0.91620 0.91818 0.90896 0.92229 0.92150 0.83076 0.84849 0.83407 0.86665 0.87485 0.87640 0.87154 0.86866 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 37.16 0.38 -1.55 16 2 C 0.07 1.03 6.03 37.16 0.22 1.25 16 3 O -0.28 -5.65 9.05 -18.24 -0.17 -5.82 16 4 C 0.34 6.80 7.48 -16.64 -0.12 6.68 16 5 N -0.55 -9.81 9.21 -12.98 -0.12 -9.93 16 6 C 0.13 1.91 11.17 -17.48 -0.20 1.72 16 7 C -0.22 -3.31 10.09 -39.49 -0.40 -3.70 16 8 C -0.01 -0.16 8.13 -38.90 -0.32 -0.48 16 9 C -0.07 -1.57 5.15 -104.62 -0.54 -2.11 16 10 C 0.15 3.44 6.26 -80.62 -0.50 2.93 16 11 N -0.43 -10.26 9.51 -4.85 -0.05 -10.31 16 12 C 0.02 0.55 6.74 -82.94 -0.56 -0.01 16 13 C -0.05 -1.01 9.99 -39.45 -0.39 -1.40 16 14 C -0.18 -3.20 9.90 -39.96 -0.40 -3.59 16 15 C -0.10 -1.83 9.91 -40.00 -0.40 -2.23 16 16 C -0.15 -2.96 9.80 -39.38 -0.39 -3.35 16 17 C -0.02 -0.42 5.87 -104.97 -0.62 -1.03 16 18 C -0.26 -6.30 6.97 -38.11 -0.27 -6.57 16 19 C 0.06 1.48 5.29 -104.68 -0.55 0.93 16 20 C -0.40 -9.80 7.57 -37.91 -0.29 -10.09 16 21 H 0.10 2.58 6.90 -52.49 -0.36 2.22 16 22 C 0.08 1.94 5.43 -17.31 -0.09 1.85 16 23 N -0.78 -18.45 13.93 55.56 0.77 -17.67 16 24 Si 0.91 19.33 24.46 -169.99 -4.16 15.17 16 25 H -0.27 -5.55 6.69 56.52 0.38 -5.18 16 26 H -0.24 -5.35 6.77 56.52 0.38 -4.97 16 27 H -0.29 -5.80 7.11 56.52 0.40 -5.40 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 33 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.15 2.74 7.24 -52.49 -0.38 2.36 16 36 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.11 2.01 8.06 -52.48 -0.42 1.59 16 40 H 0.11 2.66 4.53 -52.49 -0.24 2.42 16 41 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 LS Contribution 344.73 15.07 5.19 5.19 Total: -1.00 -28.01 344.73 -8.74 -36.76 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.80 Total: 7.37 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -5.42 Total: -20.77 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.61 Total: -37.91 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.17 Total: -5.82 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.16 Total: 15.17 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.01 -8.74 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240492635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.058 kcal (2) G-P(sol) polarization free energy of solvation -28.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds