Wall clock time and date at job start Tue Mar 31 2020 13:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35874 * 117.00269 * 2 1 4 4 C 1.39457 * 119.77688 * 0.02562 * 3 2 1 5 5 C 1.37956 * 120.61546 * 179.76351 * 4 3 2 6 6 C 1.39161 * 120.16399 * 0.47509 * 5 4 3 7 7 C 1.47858 * 120.21913 * 179.78699 * 6 5 4 8 8 C 1.39747 * 120.08991 * 129.71831 * 7 6 5 9 9 C 1.37982 * 120.08791 * 179.97438 * 8 7 6 10 10 C 1.38209 * 120.27616 * 0.02990 * 9 8 7 11 11 C 1.39447 * 120.18284 * 359.97438 * 10 9 8 12 12 C 1.48439 * 120.04397 * 179.97438 * 11 10 9 13 13 C 1.40842 * 126.03619 * 359.97438 * 12 11 10 14 14 C 1.35089 * 107.84473 * 180.02562 * 13 12 11 15 15 N 1.35034 * 107.97926 * 0.02562 * 14 13 12 16 16 H 0.97004 * 125.92554 * 179.97438 * 15 14 13 17 17 N 1.31615 * 126.03763 * 179.69303 * 12 11 10 18 18 C 1.39047 * 119.91112 * 359.97438 * 11 10 9 19 19 C 1.41891 * 119.56410 * 359.51066 * 6 5 4 20 20 C 1.40890 * 120.30063 * 180.27826 * 19 6 5 21 21 H 1.07997 * 120.00101 * 333.44392 * 20 19 6 22 22 C 1.40049 * 120.00041 * 153.44663 * 20 19 6 23 23 N 1.30783 * 119.99930 * 343.63493 * 22 20 19 24 24 Si 1.86799 * 120.00084 * 163.63616 * 22 20 19 25 25 H 1.48506 * 109.47349 * 94.63968 * 24 22 20 26 26 H 1.48504 * 109.47055 * 214.63622 * 24 22 20 27 27 H 1.48493 * 109.47025 * 334.63779 * 24 22 20 28 28 C 1.37929 * 119.78041 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47122 * 300.00281 * 1 2 3 31 31 H 1.09001 * 109.47265 * 60.00059 * 1 2 3 32 32 H 1.08004 * 119.69946 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.91693 * 180.25936 * 5 4 3 34 34 H 1.07999 * 119.96444 * 0.02773 * 8 7 6 35 35 H 1.07997 * 119.86440 * 179.74819 * 9 8 7 36 36 H 1.07999 * 119.90832 * 179.97438 * 10 9 8 37 37 H 1.07997 * 126.07560 * 359.97438 * 13 12 11 38 38 H 1.08004 * 126.00429 * 180.02562 * 14 13 12 39 39 H 1.08000 * 120.13969 * 180.02562 * 18 11 10 40 40 H 0.97000 * 120.00363 * 180.02562 * 23 22 20 41 41 H 1.07997 * 120.09328 * 0.02638 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2818 2.3773 0.0005 5 6 1.8901 3.6155 0.0055 6 6 3.2784 3.7126 0.0000 7 6 3.9316 5.0390 0.0005 8 6 4.9381 5.3240 0.9271 9 6 5.5480 6.5617 0.9272 10 6 5.1678 7.5260 0.0130 11 6 4.1646 7.2539 -0.9167 12 6 3.7582 8.2920 -1.8967 13 6 4.2971 9.5890 -2.0013 14 6 3.6618 10.2211 -3.0121 15 7 2.7546 9.3671 -3.5329 16 1 2.1549 9.5549 -4.2718 17 7 2.8342 8.1613 -2.8248 18 6 3.5455 6.0089 -0.9243 19 6 4.0629 2.5303 -0.0002 20 6 5.4695 2.6105 0.0002 21 1 5.9611 3.4766 -0.4176 22 6 6.2302 1.5671 0.5423 23 7 5.6653 0.6833 1.3234 24 14 8.0519 1.4377 0.1497 25 1 8.8375 2.1027 1.2201 26 1 8.4401 0.0066 0.0672 27 1 8.3264 2.1007 -1.1504 28 6 3.4235 1.2775 0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.2038 2.3109 0.0014 33 1 1.2875 4.5117 0.0101 34 1 5.2397 4.5743 1.6436 35 1 6.3227 6.7794 1.6475 36 1 5.6488 8.4929 0.0186 37 1 5.0787 10.0047 -1.3827 38 1 3.8470 11.2317 -3.3451 39 1 2.7685 5.7940 -1.6429 40 1 6.1922 -0.0392 1.6992 41 1 4.0097 0.3704 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240563491.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:46 Heat of formation + Delta-G solvation = 57.858653 kcal Electronic energy + Delta-G solvation = -25285.306149 eV Core-core repulsion = 21709.633804 eV Total energy + Delta-G solvation = -3575.672345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.99270 -40.64463 -39.70518 -37.88927 -35.44680 -33.80664 -32.59140 -31.66692 -30.90450 -30.51549 -29.59150 -27.72953 -27.01643 -24.40309 -23.90663 -22.77504 -21.97268 -21.58241 -20.29366 -19.52019 -19.00514 -17.96165 -17.37699 -16.89205 -16.47928 -16.39031 -16.34797 -15.65429 -15.56511 -15.19815 -14.84059 -14.54587 -14.37521 -14.30230 -14.17430 -13.70997 -13.47978 -13.32824 -13.08993 -12.90553 -12.79826 -12.70283 -12.40688 -12.04314 -12.01409 -11.73316 -11.62544 -11.35765 -11.33638 -10.99821 -10.90836 -9.73830 -9.67155 -9.39627 -9.11036 -8.74161 -8.40666 -6.33835 0.14926 0.47354 0.97277 1.14683 1.27804 1.39308 1.49956 1.55314 2.06001 2.07197 2.20931 2.69014 2.77280 3.16660 3.63100 3.72434 3.94731 4.20118 4.26853 4.33743 4.44590 4.44839 4.48754 4.50994 4.55730 4.71530 4.74904 4.78279 4.85704 5.01898 5.04775 5.14488 5.22244 5.25172 5.35570 5.53511 5.60210 5.65274 5.75230 5.84374 5.91472 5.97563 6.09925 6.20597 6.28157 6.50023 6.54673 6.75769 6.88823 6.92742 7.03855 8.31521 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.004228 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.602437 B = 6620.558673 C = 8616.143871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.129 3.871 4 C -0.316 4.316 5 C -0.048 4.048 6 C -0.214 4.214 7 C -0.006 4.006 8 C -0.104 4.104 9 C -0.120 4.120 10 C -0.104 4.104 11 C -0.035 4.035 12 C 0.102 3.898 13 C -0.279 4.279 14 C 0.077 3.923 15 N -0.472 5.472 16 H 0.452 0.548 17 N -0.336 5.336 18 C -0.112 4.112 19 C 0.131 3.869 20 C -0.467 4.467 21 H 0.082 0.918 22 C 0.040 3.960 23 N -0.813 5.813 24 Si 0.973 3.027 25 H -0.255 1.255 26 H -0.268 1.268 27 H -0.261 1.261 28 C -0.228 4.228 29 H 0.117 0.883 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.229 0.771 39 H 0.105 0.895 40 H 0.289 0.711 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 15.453 -4.527 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C 0.084 3.916 4 C -0.336 4.336 5 C -0.066 4.066 6 C -0.215 4.215 7 C -0.006 4.006 8 C -0.123 4.123 9 C -0.137 4.137 10 C -0.123 4.123 11 C -0.037 4.037 12 C -0.062 4.062 13 C -0.308 4.308 14 C -0.070 4.070 15 N -0.182 5.182 16 H 0.298 0.702 17 N -0.161 5.161 18 C -0.132 4.132 19 C 0.128 3.872 20 C -0.495 4.495 21 H 0.100 0.900 22 C -0.177 4.177 23 N -0.438 5.438 24 Si 0.794 3.206 25 H -0.179 1.179 26 H -0.193 1.193 27 H -0.185 1.185 28 C -0.249 4.249 29 H 0.135 0.865 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.169 0.831 36 H 0.174 0.826 37 H 0.189 0.811 38 H 0.245 0.755 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.308 14.312 -4.924 15.311 hybrid contribution 0.429 -0.131 -0.066 0.453 sum -1.880 14.182 -4.990 15.151 Atomic orbital electron populations 1.23145 0.77642 1.04559 1.01441 1.85964 1.22767 1.28249 1.89495 1.19097 0.92213 0.83833 0.96418 1.20644 0.98732 0.91743 1.22463 1.20655 0.93313 0.96219 0.96445 1.18909 0.92785 0.91969 1.17877 1.18700 0.95486 0.92002 0.94457 1.21477 0.95683 0.97018 0.98115 1.21245 1.00393 0.92345 0.99759 1.21293 0.96302 1.00449 0.94264 1.17914 0.98358 0.91410 0.95986 1.20947 0.95380 0.95132 0.94719 1.21876 1.09180 0.93758 1.05972 1.23276 0.90565 0.98394 0.94761 1.46407 1.32498 1.09233 1.30031 0.70190 1.77523 1.23140 1.04959 1.10472 1.21254 1.00473 0.93100 0.98335 1.17538 0.93665 0.89478 0.86497 1.19655 0.91131 1.04235 1.34497 0.90031 1.26754 1.05506 0.93424 0.91996 1.69886 1.40378 1.11978 1.21581 0.85320 0.76515 0.78713 0.80087 1.17927 1.19281 1.18501 1.20463 0.90487 0.98533 1.15384 0.86462 0.92797 0.92581 0.85662 0.86984 0.87275 0.83122 0.82579 0.81143 0.75491 0.87700 0.90021 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.80 113.37 1.11 1.96 16 2 O -0.35 -15.88 10.48 -92.14 -0.97 -16.84 16 3 C 0.13 6.54 6.67 22.49 0.15 6.69 16 4 C -0.32 -14.60 9.02 22.50 0.20 -14.40 16 5 C -0.05 -2.27 9.49 22.42 0.21 -2.06 16 6 C -0.21 -10.87 5.52 -19.60 -0.11 -10.98 16 7 C -0.01 -0.29 4.91 -20.07 -0.10 -0.39 16 8 C -0.10 -4.31 7.98 22.57 0.18 -4.13 16 9 C -0.12 -3.86 10.02 22.20 0.22 -3.63 16 10 C -0.10 -3.08 9.57 22.55 0.22 -2.86 16 11 C -0.03 -1.22 5.87 -20.07 -0.12 -1.34 16 12 C 0.10 3.16 6.99 42.53 0.30 3.46 16 13 C -0.28 -6.01 10.17 22.18 0.23 -5.78 16 14 C 0.08 1.18 11.97 83.47 1.00 2.18 16 15 N -0.47 -9.42 7.35 -57.67 -0.42 -9.84 16 16 H 0.45 5.65 8.96 -213.34 -1.91 3.73 16 17 N -0.34 -10.64 12.36 -48.15 -0.60 -11.24 16 18 C -0.11 -4.65 9.16 22.76 0.21 -4.45 16 19 C 0.13 7.26 5.55 -21.14 -0.12 7.14 16 20 C -0.47 -25.03 7.10 23.36 0.17 -24.87 16 21 H 0.08 4.31 6.62 -2.91 -0.02 4.29 16 22 C 0.04 2.01 5.15 85.29 0.44 2.45 16 23 N -0.81 -43.10 11.00 21.84 0.24 -42.86 16 24 Si 0.97 38.48 29.59 68.60 2.03 40.51 16 25 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 26 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 27 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 28 C -0.23 -12.87 8.59 22.79 0.20 -12.68 16 29 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.05 1.61 7.64 -2.39 -0.02 1.59 16 31 H 0.06 1.65 7.65 -2.39 -0.02 1.63 16 32 H 0.13 4.90 6.25 -2.91 -0.02 4.89 16 33 H 0.11 4.74 8.04 -2.91 -0.02 4.72 16 34 H 0.11 4.92 7.29 -2.91 -0.02 4.90 16 35 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 36 H 0.16 3.31 7.02 -2.91 -0.02 3.29 16 37 H 0.17 2.71 7.33 -2.91 -0.02 2.69 16 38 H 0.23 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.10 4.56 7.83 -2.91 -0.02 4.54 16 40 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 41 H 0.10 6.12 6.25 -2.91 -0.02 6.10 16 Total: -1.00 -72.79 349.09 3.84 -68.95 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.83 Total: 35.02 kcal Atomic # 6 Polarization: -68.08 SS G_CDS: 4.39 Total: -63.69 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -0.78 Total: -63.94 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.97 Total: -16.84 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -72.79 3.84 -68.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240563491.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.809 kcal (2) G-P(sol) polarization free energy of solvation -72.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds