Wall clock time and date at job start Tue Mar 31 2020 13:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35674 * 117.00161 * 2 1 4 4 C 1.37946 * 120.19135 * 0.26282 * 3 2 1 5 5 C 1.39682 * 119.92977 * 180.27545 * 4 3 2 6 6 C 1.47925 * 119.83806 * 179.76347 * 5 4 3 7 7 C 1.39678 * 120.07182 * 179.72259 * 6 5 4 8 8 C 1.37759 * 119.92116 * 179.97438 * 7 6 5 9 9 C 1.39039 * 120.08042 * 359.97438 * 8 7 6 10 10 N 1.39978 * 119.92561 * 180.02562 * 9 8 7 11 11 C 1.35799 * 126.10085 * 359.69365 * 10 9 8 12 12 C 1.35316 * 107.61842 * 179.84077 * 11 10 9 13 13 C 1.39922 * 107.96697 * 0.42165 * 12 11 10 14 14 N 1.30859 * 108.36263 * 359.73801 * 13 12 11 15 15 C 1.39046 * 120.14973 * 0.02562 * 9 8 7 16 16 C 1.37766 * 120.07287 * 359.97438 * 15 9 8 17 17 C 1.40116 * 120.31540 * 359.48182 * 5 4 3 18 18 C 1.36091 * 120.39038 * 0.23541 * 17 5 4 19 19 C 1.40930 * 120.06035 * 0.02562 * 18 17 5 20 20 C 1.40821 * 120.15747 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99737 * 204.95801 * 20 19 18 22 22 C 1.39985 * 119.99690 * 24.95005 * 20 19 18 23 23 N 1.30844 * 119.99990 * 17.83360 * 22 20 19 24 24 Si 1.86799 * 119.99579 * 197.83369 * 22 20 19 25 25 H 1.48504 * 109.47102 * 90.00389 * 24 22 20 26 26 H 1.48500 * 109.46891 * 210.00369 * 24 22 20 27 27 H 1.48504 * 109.47181 * 330.00201 * 24 22 20 28 28 H 1.09006 * 109.46752 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47135 * 299.99276 * 1 2 3 30 30 H 1.08992 * 109.47286 * 60.00157 * 1 2 3 31 31 H 1.08003 * 120.03057 * 0.03391 * 4 3 2 32 32 H 1.07995 * 120.03876 * 359.69500 * 7 6 5 33 33 H 1.08007 * 119.95745 * 179.97438 * 8 7 6 34 34 H 1.07997 * 126.18908 * 359.97438 * 11 10 9 35 35 H 1.07998 * 126.01771 * 180.13882 * 12 11 10 36 36 H 1.08003 * 125.81538 * 179.75234 * 13 12 11 37 37 H 1.07997 * 119.96313 * 180.02562 * 15 9 8 38 38 H 1.07993 * 120.03468 * 180.02562 * 16 15 9 39 39 H 1.07992 * 119.80891 * 180.25979 * 17 5 4 40 40 H 1.07999 * 119.97394 * 180.02562 * 18 17 5 41 41 H 0.97002 * 119.99816 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2976 2.3683 0.0055 5 6 1.9374 3.6099 -0.0004 6 6 1.1339 4.8519 0.0002 7 6 1.7687 6.0962 0.0002 8 6 1.0174 7.2509 0.0002 9 6 -0.3711 7.1788 -0.0003 10 7 -1.1314 8.3542 -0.0008 11 6 -0.6446 9.6219 0.0050 12 6 -1.7018 10.4665 -0.0015 13 6 -2.8698 9.6961 -0.0018 14 7 -2.5301 8.4324 -0.0014 15 6 -1.0063 5.9419 -0.0003 16 6 -0.2611 4.7832 -0.0003 17 6 3.3366 3.6846 -0.0009 18 6 4.0866 2.5490 -0.0004 19 6 3.4579 1.2877 -0.0001 20 6 4.2320 0.1114 -0.0002 21 1 3.8204 -0.8058 -0.3946 22 6 5.5351 0.1310 0.5108 23 7 5.9170 1.1090 1.2916 24 14 6.7288 -1.2390 0.0777 25 1 7.4727 -0.8760 -1.1553 26 1 7.6873 -1.4320 1.1954 27 1 5.9754 -2.4980 -0.1513 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 0.2189 2.3160 0.0103 32 1 2.8471 6.1529 0.0048 33 1 1.5076 8.2133 0.0007 34 1 0.3976 9.9048 0.0112 35 1 -1.6527 11.5454 -0.0014 36 1 -3.8796 10.0792 -0.0024 37 1 -2.0850 5.8894 -0.0012 38 1 -0.7550 3.8228 -0.0008 39 1 3.8228 4.6489 -0.0011 40 1 5.1646 2.6144 -0.0004 41 1 6.8198 1.1224 1.6460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241392658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:09 Heat of formation + Delta-G solvation = 90.167084 kcal Electronic energy + Delta-G solvation = -24802.009154 eV Core-core repulsion = 21227.737808 eV Total energy + Delta-G solvation = -3574.271346 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38428 -39.21633 -38.33630 -36.22287 -34.33922 -32.99949 -31.16484 -30.57953 -30.01308 -28.90140 -28.16120 -26.64629 -25.16688 -23.04026 -22.99491 -21.21289 -20.90865 -20.02086 -19.86863 -18.27182 -17.61621 -16.78801 -15.65585 -15.22124 -15.16257 -15.15009 -14.74480 -14.71305 -14.33034 -14.21303 -13.56963 -13.40992 -13.28723 -12.96629 -12.67898 -12.65849 -12.44170 -12.14803 -11.73533 -11.48574 -11.35138 -11.28087 -10.95436 -10.84692 -10.61396 -10.58487 -10.49649 -9.85245 -9.78455 -9.69790 -9.40068 -9.09372 -8.78274 -8.16191 -7.35824 -7.11924 -6.88376 -4.40019 0.91725 1.65029 2.05963 2.47647 2.72060 2.74385 2.91402 2.96725 3.00934 3.11167 3.76988 4.08617 4.39402 4.53241 4.55806 4.71453 5.04923 5.10297 5.33379 5.43173 5.45510 5.54956 5.62604 5.69925 5.75961 5.78737 5.85454 5.88265 5.93938 6.05751 6.16284 6.36538 6.40890 6.49603 6.66323 6.70548 6.82155 6.88864 7.00859 7.13664 7.19290 7.35843 7.54572 7.61377 7.65076 7.89601 7.98346 8.23417 8.45791 8.57751 8.87720 9.90379 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025019 B = 0.002616 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.873534 B =10702.517702 C =11737.067278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.007 3.993 4 C -0.147 4.147 5 C -0.183 4.183 6 C 0.025 3.975 7 C -0.122 4.122 8 C -0.120 4.120 9 C 0.097 3.903 10 N -0.305 5.305 11 C 0.049 3.951 12 C -0.272 4.272 13 C 0.041 3.959 14 N -0.293 5.293 15 C -0.100 4.100 16 C -0.128 4.128 17 C -0.088 4.088 18 C -0.159 4.159 19 C 0.110 3.890 20 C -0.421 4.421 21 H 0.089 0.911 22 C 0.069 3.931 23 N -0.775 5.775 24 Si 0.915 3.085 25 H -0.265 1.265 26 H -0.276 1.276 27 H -0.259 1.259 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.175 0.825 35 H 0.149 0.851 36 H 0.184 0.816 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.269 10.165 -1.694 12.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.227 6.227 3 C -0.037 4.037 4 C -0.166 4.166 5 C -0.184 4.184 6 C 0.024 3.976 7 C -0.141 4.141 8 C -0.141 4.141 9 C 0.006 3.994 10 N -0.080 5.080 11 C -0.095 4.095 12 C -0.301 4.301 13 C -0.145 4.145 14 N -0.114 5.114 15 C -0.119 4.119 16 C -0.147 4.147 17 C -0.107 4.107 18 C -0.178 4.178 19 C 0.107 3.893 20 C -0.448 4.448 21 H 0.107 0.893 22 C -0.151 4.151 23 N -0.398 5.398 24 Si 0.739 3.261 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.183 1.183 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.192 0.808 35 H 0.167 0.833 36 H 0.201 0.799 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.113 0.887 40 H 0.144 0.856 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.343 8.772 -1.536 11.543 hybrid contribution 0.536 0.656 -0.009 0.847 sum -6.808 9.428 -1.546 11.731 Atomic orbital electron populations 1.22756 0.81545 1.01934 1.00018 1.85966 1.18366 1.27992 1.90376 1.19045 0.92255 0.82767 1.09673 1.20684 0.97437 0.91985 1.06456 1.17715 0.92342 0.89878 1.18504 1.19061 0.92409 0.93107 0.92993 1.21016 0.99957 0.90742 1.02383 1.20581 0.90607 0.99229 1.03688 1.17420 0.89433 0.83466 1.09069 1.45998 1.04278 1.04184 1.53558 1.22726 1.00586 0.83968 1.02213 1.21498 0.91305 1.00548 1.16746 1.23956 1.00074 0.90367 1.00074 1.77393 0.89222 1.20500 1.24256 1.20660 1.00168 0.90191 1.00914 1.21059 0.93365 0.97441 1.02816 1.20468 0.92380 0.97403 1.00425 1.20756 0.99714 0.90493 1.06882 1.17196 0.87494 0.94130 0.90500 1.19660 0.96358 0.96997 1.31815 0.89292 1.26072 0.99044 0.97282 0.92676 1.69826 1.19493 1.30154 1.20362 0.86176 0.79517 0.81233 0.79189 1.18968 1.20060 1.18251 0.89885 0.94055 0.94128 0.87998 0.85045 0.86105 0.80803 0.83300 0.79865 0.85405 0.85641 0.88661 0.85637 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.81 101.05 0.99 1.54 16 2 O -0.31 -6.91 9.77 -18.72 -0.18 -7.09 16 3 C 0.01 0.16 6.71 -38.44 -0.26 -0.10 16 4 C -0.15 -3.15 8.40 -39.15 -0.33 -3.48 16 5 C -0.18 -3.87 5.89 -104.69 -0.62 -4.48 16 6 C 0.02 0.46 5.88 -104.86 -0.62 -0.16 16 7 C -0.12 -1.99 9.42 -39.22 -0.37 -2.36 16 8 C -0.12 -1.76 9.44 -39.46 -0.37 -2.13 16 9 C 0.10 1.54 6.69 -83.54 -0.56 0.98 16 10 N -0.30 -4.53 3.81 -10.52 -0.04 -4.57 16 11 C 0.05 0.58 10.82 -16.84 -0.18 0.40 16 12 C -0.27 -2.86 10.80 -39.99 -0.43 -3.30 16 13 C 0.04 0.47 12.02 -17.34 -0.21 0.27 16 14 N -0.29 -4.38 11.85 30.64 0.36 -4.01 16 15 C -0.10 -1.62 9.64 -39.45 -0.38 -2.00 16 16 C -0.13 -2.18 9.42 -39.22 -0.37 -2.55 16 17 C -0.09 -1.92 9.34 -39.65 -0.37 -2.29 16 18 C -0.16 -3.84 8.61 -39.33 -0.34 -4.18 16 19 C 0.11 2.79 5.58 -106.66 -0.60 2.20 16 20 C -0.42 -10.61 8.70 -37.95 -0.33 -10.94 16 21 H 0.09 2.23 7.64 -52.49 -0.40 1.82 16 22 C 0.07 1.63 5.13 -17.32 -0.09 1.54 16 23 N -0.77 -18.57 10.97 55.55 0.61 -17.96 16 24 Si 0.92 17.52 29.60 -169.99 -5.03 12.49 16 25 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 26 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 27 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 30 H 0.04 0.61 7.67 -51.93 -0.40 0.22 16 31 H 0.10 1.92 4.40 -52.48 -0.23 1.69 16 32 H 0.13 1.98 6.17 -52.49 -0.32 1.65 16 33 H 0.12 1.38 6.73 -52.48 -0.35 1.03 16 34 H 0.17 1.50 7.04 -52.49 -0.37 1.13 16 35 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.18 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.13 1.98 7.68 -52.49 -0.40 1.58 16 38 H 0.13 1.99 6.17 -52.49 -0.32 1.67 16 39 H 0.10 1.82 6.16 -52.49 -0.32 1.50 16 40 H 0.13 3.08 6.17 -52.49 -0.32 2.76 16 41 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -28.62 345.67 -8.75 -37.37 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -4.25 Total: 9.60 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -5.43 Total: -31.04 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.93 Total: -26.55 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.18 Total: -7.09 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.62 -8.75 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241392658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.537 kcal (2) G-P(sol) polarization free energy of solvation -28.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds