Wall clock time and date at job start Tue Mar 31 2020 13:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35674 * 117.00161 * 2 1 4 4 C 1.37946 * 120.19135 * 0.26282 * 3 2 1 5 5 C 1.39682 * 119.92977 * 180.27545 * 4 3 2 6 6 C 1.47925 * 119.83806 * 179.76347 * 5 4 3 7 7 C 1.39678 * 120.07182 * 179.72259 * 6 5 4 8 8 C 1.37759 * 119.92116 * 179.97438 * 7 6 5 9 9 C 1.39039 * 120.08042 * 359.97438 * 8 7 6 10 10 N 1.39978 * 119.92561 * 180.02562 * 9 8 7 11 11 C 1.35799 * 126.10085 * 359.69365 * 10 9 8 12 12 C 1.35316 * 107.61842 * 179.84077 * 11 10 9 13 13 C 1.39922 * 107.96697 * 0.42165 * 12 11 10 14 14 N 1.30859 * 108.36263 * 359.73801 * 13 12 11 15 15 C 1.39046 * 120.14973 * 0.02562 * 9 8 7 16 16 C 1.37766 * 120.07287 * 359.97438 * 15 9 8 17 17 C 1.40116 * 120.31540 * 359.48182 * 5 4 3 18 18 C 1.36091 * 120.39038 * 0.23541 * 17 5 4 19 19 C 1.40930 * 120.06035 * 0.02562 * 18 17 5 20 20 C 1.40821 * 120.15747 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99737 * 204.95801 * 20 19 18 22 22 C 1.39985 * 119.99690 * 24.95005 * 20 19 18 23 23 N 1.30844 * 119.99990 * 17.83360 * 22 20 19 24 24 Si 1.86799 * 119.99579 * 197.83369 * 22 20 19 25 25 H 1.48504 * 109.47102 * 90.00389 * 24 22 20 26 26 H 1.48500 * 109.46891 * 210.00369 * 24 22 20 27 27 H 1.48504 * 109.47181 * 330.00201 * 24 22 20 28 28 H 1.09006 * 109.46752 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47135 * 299.99276 * 1 2 3 30 30 H 1.08992 * 109.47286 * 60.00157 * 1 2 3 31 31 H 1.08003 * 120.03057 * 0.03391 * 4 3 2 32 32 H 1.07995 * 120.03876 * 359.69500 * 7 6 5 33 33 H 1.08007 * 119.95745 * 179.97438 * 8 7 6 34 34 H 1.07997 * 126.18908 * 359.97438 * 11 10 9 35 35 H 1.07998 * 126.01771 * 180.13882 * 12 11 10 36 36 H 1.08003 * 125.81538 * 179.75234 * 13 12 11 37 37 H 1.07997 * 119.96313 * 180.02562 * 15 9 8 38 38 H 1.07993 * 120.03468 * 180.02562 * 16 15 9 39 39 H 1.07992 * 119.80891 * 180.25979 * 17 5 4 40 40 H 1.07999 * 119.97394 * 180.02562 * 18 17 5 41 41 H 0.97002 * 119.99816 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2976 2.3683 0.0055 5 6 1.9374 3.6099 -0.0004 6 6 1.1339 4.8519 0.0002 7 6 1.7687 6.0962 0.0002 8 6 1.0174 7.2509 0.0002 9 6 -0.3711 7.1788 -0.0003 10 7 -1.1314 8.3542 -0.0008 11 6 -0.6446 9.6219 0.0050 12 6 -1.7018 10.4665 -0.0015 13 6 -2.8698 9.6961 -0.0018 14 7 -2.5301 8.4324 -0.0014 15 6 -1.0063 5.9419 -0.0003 16 6 -0.2611 4.7832 -0.0003 17 6 3.3366 3.6846 -0.0009 18 6 4.0866 2.5490 -0.0004 19 6 3.4579 1.2877 -0.0001 20 6 4.2320 0.1114 -0.0002 21 1 3.8204 -0.8058 -0.3946 22 6 5.5351 0.1310 0.5108 23 7 5.9170 1.1090 1.2916 24 14 6.7288 -1.2390 0.0777 25 1 7.4727 -0.8760 -1.1553 26 1 7.6873 -1.4320 1.1954 27 1 5.9754 -2.4980 -0.1513 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 0.2189 2.3160 0.0103 32 1 2.8471 6.1529 0.0048 33 1 1.5076 8.2133 0.0007 34 1 0.3976 9.9048 0.0112 35 1 -1.6527 11.5454 -0.0014 36 1 -3.8796 10.0792 -0.0024 37 1 -2.0850 5.8894 -0.0012 38 1 -0.7550 3.8228 -0.0008 39 1 3.8228 4.6489 -0.0011 40 1 5.1646 2.6144 -0.0004 41 1 6.8198 1.1224 1.6460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241392658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:08 Heat of formation + Delta-G solvation = 76.615235 kcal Electronic energy + Delta-G solvation = -24802.596806 eV Core-core repulsion = 21227.737808 eV Total energy + Delta-G solvation = -3574.858998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.35665 -40.73811 -39.74716 -37.84119 -35.90981 -34.32210 -32.40438 -32.05225 -31.08105 -30.50370 -29.54220 -28.08823 -26.68788 -24.35389 -24.27196 -22.61222 -22.23806 -21.29213 -21.14449 -19.55523 -19.11489 -18.33521 -17.25276 -16.65753 -16.43284 -16.25691 -16.16843 -16.07412 -15.72415 -15.51203 -14.82687 -14.75918 -14.43485 -14.34295 -14.02222 -14.00036 -13.68758 -13.54182 -13.27380 -12.95820 -12.86448 -12.75102 -12.46866 -12.20764 -12.06845 -11.88109 -11.71567 -11.41241 -11.32807 -11.23853 -10.97639 -10.14027 -10.02656 -9.57747 -9.00938 -8.73298 -8.48358 -6.20371 -0.31728 0.38909 0.78449 1.13250 1.32066 1.39046 1.47191 1.51792 1.62001 1.89449 2.19955 2.59085 2.88666 2.99806 3.53797 3.70290 3.83590 3.96002 4.00004 4.04223 4.22129 4.34824 4.42669 4.45456 4.46660 4.55520 4.60102 4.72199 4.76758 4.80740 4.97252 5.07198 5.07428 5.10536 5.21963 5.28160 5.33459 5.45724 5.56980 5.69794 5.77546 5.82841 5.93872 6.18309 6.23313 6.28060 6.48765 6.69480 6.72265 6.82661 7.18841 8.25714 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025019 B = 0.002616 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.873534 B =10702.517702 C =11737.067278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C -0.008 4.008 4 C -0.156 4.156 5 C -0.167 4.167 6 C -0.012 4.012 7 C -0.113 4.113 8 C -0.119 4.119 9 C 0.114 3.886 10 N -0.332 5.332 11 C 0.040 3.960 12 C -0.265 4.265 13 C 0.047 3.953 14 N -0.339 5.339 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.101 4.101 18 C -0.173 4.173 19 C 0.071 3.929 20 C -0.467 4.467 21 H 0.073 0.927 22 C 0.034 3.966 23 N -0.812 5.812 24 Si 0.983 3.017 25 H -0.259 1.259 26 H -0.265 1.265 27 H -0.262 1.262 28 H 0.112 0.888 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.126 0.874 32 H 0.143 0.857 33 H 0.159 0.841 34 H 0.206 0.794 35 H 0.183 0.817 36 H 0.217 0.783 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.766 13.586 -1.888 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.254 6.254 3 C -0.052 4.052 4 C -0.175 4.175 5 C -0.168 4.168 6 C -0.013 4.013 7 C -0.131 4.131 8 C -0.139 4.139 9 C 0.022 3.978 10 N -0.108 5.108 11 C -0.101 4.101 12 C -0.293 4.293 13 C -0.139 4.139 14 N -0.159 5.159 15 C -0.135 4.135 16 C -0.138 4.138 17 C -0.119 4.119 18 C -0.193 4.193 19 C 0.068 3.932 20 C -0.495 4.495 21 H 0.092 0.908 22 C -0.182 4.182 23 N -0.437 5.437 24 Si 0.804 3.196 25 H -0.183 1.183 26 H -0.189 1.189 27 H -0.186 1.186 28 H 0.130 0.870 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.222 0.778 35 H 0.200 0.800 36 H 0.234 0.766 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.870 12.227 -1.731 15.205 hybrid contribution 0.522 0.119 0.035 0.537 sum -8.348 12.346 -1.696 14.999 Atomic orbital electron populations 1.23084 0.78747 1.04266 1.00855 1.85915 1.21353 1.27717 1.90391 1.19253 0.92274 0.83966 1.09751 1.20965 0.98654 0.91549 1.06324 1.18097 0.92464 0.91113 1.15160 1.19020 0.92835 0.92786 0.96630 1.21216 1.00772 0.90473 1.00681 1.20869 0.90098 1.00240 1.02720 1.17679 0.90199 0.84007 1.05937 1.46085 1.04465 1.04598 1.55668 1.23445 1.02579 0.82939 1.01160 1.21995 0.90370 1.02104 1.14799 1.24689 1.02081 0.89587 0.97568 1.77377 0.89649 1.22579 1.26260 1.20726 1.00399 0.90413 1.01972 1.21130 0.92926 0.98168 1.01621 1.20718 0.92893 0.97758 1.00524 1.20752 0.99405 0.91197 1.07925 1.17556 0.88809 0.94758 0.92052 1.19660 0.98148 0.96692 1.35024 0.90842 1.26783 0.99891 0.99589 0.91948 1.69854 1.20190 1.32040 1.21592 0.85181 0.77243 0.78003 0.79213 1.18313 1.18908 1.18633 0.86957 0.93295 0.92974 0.85626 0.83894 0.82385 0.77777 0.79967 0.76632 0.85105 0.85123 0.86164 0.86921 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.81 113.37 1.11 1.94 16 2 O -0.34 -15.59 9.77 -89.91 -0.88 -16.47 16 3 C -0.01 -0.40 6.71 23.01 0.15 -0.25 16 4 C -0.16 -6.81 8.40 22.55 0.19 -6.62 16 5 C -0.17 -7.08 5.89 -19.91 -0.12 -7.20 16 6 C -0.01 -0.43 5.88 -20.02 -0.12 -0.55 16 7 C -0.11 -3.40 9.42 22.50 0.21 -3.19 16 8 C -0.12 -3.05 9.44 22.35 0.21 -2.84 16 9 C 0.11 3.28 6.69 38.23 0.26 3.54 16 10 N -0.33 -8.81 3.81 -187.20 -0.71 -9.53 16 11 C 0.04 0.78 10.82 83.40 0.90 1.68 16 12 C -0.26 -4.32 10.80 22.00 0.24 -4.08 16 13 C 0.05 0.90 12.02 85.25 1.02 1.93 16 14 N -0.34 -9.22 11.85 -56.98 -0.68 -9.89 16 15 C -0.12 -3.55 9.64 22.35 0.22 -3.33 16 16 C -0.12 -3.92 9.42 22.50 0.21 -3.71 16 17 C -0.10 -4.48 9.34 22.23 0.21 -4.27 16 18 C -0.17 -8.83 8.61 22.43 0.19 -8.64 16 19 C 0.07 3.84 5.58 -21.18 -0.12 3.72 16 20 C -0.47 -25.30 8.70 23.33 0.20 -25.10 16 21 H 0.07 4.00 7.64 -2.91 -0.02 3.98 16 22 C 0.03 1.69 5.13 85.26 0.44 2.13 16 23 N -0.81 -41.09 10.97 21.84 0.24 -40.85 16 24 Si 0.98 37.66 29.60 68.60 2.03 39.69 16 25 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 26 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 27 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 28 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 29 H 0.05 1.49 7.65 -2.39 -0.02 1.47 16 30 H 0.05 1.55 7.67 -2.39 -0.02 1.53 16 31 H 0.13 4.70 4.40 -2.91 -0.01 4.69 16 32 H 0.14 3.93 6.17 -2.91 -0.02 3.91 16 33 H 0.16 2.82 6.73 -2.91 -0.02 2.80 16 34 H 0.21 2.40 7.04 -2.91 -0.02 2.38 16 35 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.22 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.13 3.91 7.68 -2.91 -0.02 3.88 16 38 H 0.13 4.01 6.17 -2.91 -0.02 3.99 16 39 H 0.12 4.56 6.16 -2.91 -0.02 4.54 16 40 H 0.11 5.91 6.17 -2.91 -0.02 5.89 16 41 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 Total: -1.00 -66.84 345.67 6.50 -60.35 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 1.08 Total: 31.55 kcal Atomic # 6 Polarization: -60.26 SS G_CDS: 5.41 Total: -54.85 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -1.15 Total: -60.27 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.88 Total: -16.47 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -66.84 6.50 -60.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241392658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.962 kcal (2) G-P(sol) polarization free energy of solvation -66.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds