Wall clock time and date at job start Tue Mar 31 2020 12:38:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 O 1.42902 * 109.47121 * 2 1
4 4 C 1.35432 * 117.00013 * 180.02562 * 3 2 1
5 5 N 1.32369 * 119.03986 * 180.02562 * 4 3 2
6 6 C 1.32124 * 120.90194 * 179.97438 * 5 4 3
7 7 C 1.39827 * 119.00997 * 359.97438 * 6 5 4
8 8 C 1.48153 * 120.87277 * 179.97438 * 7 6 5
9 9 C 1.36684 * 120.34050 * 310.02188 * 8 7 6
10 10 C 1.41115 * 120.58730 * 179.97438 * 9 8 7
11 11 C 1.41227 * 119.48633 * 179.97438 * 10 9 8
12 12 H 1.08000 * 120.00009 * 334.13572 * 11 10 9
13 13 C 1.39920 * 119.99669 * 154.12852 * 11 10 9
14 14 N 1.30833 * 120.00270 * 341.87589 * 13 11 10
15 15 Si 1.86799 * 119.99720 * 161.87216 * 13 11 10
16 16 H 1.48498 * 109.47118 * 94.61015 * 15 13 11
17 17 H 1.48500 * 109.47179 * 214.61526 * 15 13 11
18 18 H 1.48504 * 109.47161 * 334.60794 * 15 13 11
19 19 C 1.39965 * 121.02571 * 359.97438 * 10 9 8
20 20 C 1.39898 * 120.11022 * 0.03750 * 19 10 9
21 21 C 1.40860 * 121.13683 * 179.97438 * 20 19 10
22 22 C 1.36198 * 119.60226 * 180.02562 * 21 20 19
23 23 C 1.39243 * 120.93947 * 359.94852 * 22 21 20
24 24 C 1.36540 * 120.98610 * 0.02573 * 23 22 21
25 25 C 1.39815 * 119.73433 * 0.02562 * 24 23 22
26 26 C 1.39820 * 118.25837 * 0.24783 * 7 6 5
27 27 N 1.32131 * 119.01197 * 359.49870 * 26 7 6
28 28 H 1.08997 * 109.47198 * 60.00262 * 1 2 3
29 29 H 1.08999 * 109.46742 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.46881 * 300.00014 * 1 2 3
31 31 H 1.08999 * 109.47255 * 239.99635 * 2 1 3
32 32 H 1.09006 * 109.47112 * 119.99152 * 2 1 3
33 33 H 1.07995 * 120.50274 * 180.02562 * 6 5 4
34 34 H 1.07999 * 119.70593 * 359.97438 * 9 8 7
35 35 H 0.96998 * 120.00426 * 180.02562 * 14 13 11
36 36 H 1.08004 * 119.94638 * 180.02562 * 19 10 9
37 37 H 1.07994 * 120.20182 * 359.97438 * 21 20 19
38 38 H 1.07990 * 119.52861 * 179.97438 * 22 21 20
39 39 H 1.08005 * 119.50439 * 180.30857 * 23 22 21
40 40 H 1.08000 * 120.13602 * 179.97438 * 24 23 22
41 41 H 1.08004 * 120.49645 * 179.72464 * 26 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3490 1.5247 -0.0005
5 7 3.8344 2.7562 0.0000
6 6 5.1379 2.9718 0.0000
7 6 6.0065 1.8760 0.0000
8 6 7.4752 2.0701 -0.0006
9 6 8.0600 2.9124 -0.9044
10 6 9.4584 3.1016 -0.9092
11 6 10.0382 3.9769 -1.8537
12 1 9.5382 4.1669 -2.7920
13 6 11.2604 4.5980 -1.5739
14 7 11.6931 4.6648 -0.3410
15 14 12.2743 5.3316 -2.9606
16 1 11.9637 6.7780 -3.0893
17 1 13.7189 5.1602 -2.6620
18 1 11.9466 4.6397 -4.2331
19 6 10.2798 2.4352 0.0075
20 6 9.7193 1.5645 0.9483
21 6 10.5255 0.8824 1.8804
22 6 9.9469 0.0416 2.7822
23 6 8.5682 -0.1532 2.7973
24 6 7.7573 0.4924 1.9084
25 6 8.3147 1.3627 0.9668
26 6 5.4525 0.5923 -0.0053
27 7 4.1377 0.4616 0.0000
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.8934 -0.5139 -0.8899
32 1 1.8934 -0.5137 0.8901
33 1 5.5269 3.9793 0.0008
34 1 7.4464 3.4378 -1.6212
35 1 12.5402 5.0957 -0.1469
36 1 11.3480 2.5932 -0.0115
37 1 11.5960 1.0245 1.8795
38 1 10.5661 -0.4811 3.4960
39 1 8.1334 -0.8215 3.5258
40 1 6.6898 0.3308 1.9321
41 1 6.0898 -0.2797 -0.0100
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001241554359.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:38:51
Heat of formation + Delta-G solvation = 43.688769 kcal
Electronic energy + Delta-G solvation = -25209.512948 eV
Core-core repulsion = 21633.226151 eV
Total energy + Delta-G solvation = -3576.286797 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.127 amu
Computer time = 1.51 seconds
Orbital eigenvalues (eV)
-41.06623 -39.05840 -38.22753 -35.84726 -34.03758 -33.68985 -32.41902 -31.61445
-29.94621 -29.60982 -27.80395 -25.47844 -24.80446 -23.92091 -22.77930 -22.02455
-21.34668 -20.24656 -18.85699 -17.77109 -17.53648 -16.57420 -16.21207 -16.05703
-15.21111 -15.08109 -14.70507 -14.39777 -14.11791 -14.03687 -13.38796 -13.31915
-13.01174 -12.83320 -12.64753 -12.54616 -12.39169 -12.13024 -11.75590 -11.68911
-11.41120 -11.17107 -10.98542 -10.95217 -10.88399 -10.68780 -10.55446 -10.20124
-9.80621 -9.71001 -9.39937 -9.05241 -8.88347 -8.46451 -7.62255 -6.97937
-6.79770 -4.50095 0.98233 1.20064 1.70379 2.18334 2.58595 2.88906
2.97600 3.02291 3.11328 3.77122 3.88788 3.96924 4.15802 4.67698
4.71747 4.78027 4.82017 4.89846 5.12481 5.20075 5.28128 5.49255
5.53878 5.60077 5.62546 5.67432 5.79095 5.80640 6.02690 6.11816
6.22809 6.30046 6.49880 6.54687 6.77937 6.83214 6.87600 6.90987
7.12142 7.23955 7.26836 7.35184 7.41073 7.53254 7.78491 7.94015
8.02774 8.19799 8.39097 8.61342 8.67207 9.96407
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.014140 B = 0.003488 C = 0.002879
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1979.718127 B = 8024.879966 C = 9724.773266
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.071 3.929
3 O -0.294 6.294
4 C 0.480 3.520
5 N -0.522 5.522
6 C 0.190 3.810
7 C -0.151 4.151
8 C -0.049 4.049
9 C -0.118 4.118
10 C 0.099 3.901
11 C -0.447 4.447
12 H 0.082 0.918
13 C 0.074 3.926
14 N -0.776 5.776
15 Si 0.908 3.092
16 H -0.269 1.269
17 H -0.274 1.274
18 H -0.259 1.259
19 C -0.200 4.200
20 C 0.002 3.998
21 C -0.134 4.134
22 C -0.119 4.119
23 C -0.185 4.185
24 C -0.087 4.087
25 C -0.116 4.116
26 C 0.188 3.812
27 N -0.567 5.567
28 H 0.065 0.935
29 H 0.080 0.920
30 H 0.065 0.935
31 H 0.068 0.932
32 H 0.068 0.932
33 H 0.179 0.821
34 H 0.104 0.896
35 H 0.284 0.716
36 H 0.122 0.878
37 H 0.110 0.890
38 H 0.102 0.898
39 H 0.100 0.900
40 H 0.101 0.899
41 H 0.173 0.827
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.576 -6.528 0.924 11.627
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.005 4.005
3 O -0.196 6.196
4 C 0.178 3.822
5 N -0.247 5.247
6 C 0.025 3.975
7 C -0.156 4.156
8 C -0.050 4.050
9 C -0.137 4.137
10 C 0.096 3.904
11 C -0.475 4.475
12 H 0.100 0.900
13 C -0.146 4.146
14 N -0.399 5.399
15 Si 0.732 3.268
16 H -0.194 1.194
17 H -0.198 1.198
18 H -0.183 1.183
19 C -0.220 4.220
20 C 0.002 3.998
21 C -0.152 4.152
22 C -0.137 4.137
23 C -0.203 4.203
24 C -0.105 4.105
25 C -0.117 4.117
26 C 0.023 3.977
27 N -0.295 5.295
28 H 0.084 0.916
29 H 0.099 0.901
30 H 0.084 0.916
31 H 0.086 0.914
32 H 0.086 0.914
33 H 0.196 0.804
34 H 0.122 0.878
35 H 0.095 0.905
36 H 0.140 0.860
37 H 0.128 0.872
38 H 0.120 0.880
39 H 0.118 0.882
40 H 0.119 0.881
41 H 0.190 0.810
Dipole moment (debyes) X Y Z Total
from point charges -10.717 -6.404 1.060 12.530
hybrid contribution 1.555 0.351 -0.431 1.652
sum -9.162 -6.053 0.629 10.999
Atomic orbital electron populations
1.21822 0.92748 1.02893 1.03471 1.22673 0.94702 0.80269 1.02822
1.86032 1.15172 1.30947 1.87473 1.20625 0.85245 0.85590 0.90719
1.67519 1.15996 1.21919 1.19237 1.23361 0.85622 1.00003 0.88556
1.20499 0.95869 0.94820 1.04389 1.18749 0.87762 1.00260 0.98276
1.21171 0.95459 0.98515 0.98530 1.17365 0.89650 0.90765 0.92575
1.19661 1.03498 1.21648 1.02681 0.90038 1.25926 0.97547 0.94900
0.96245 1.69822 1.19163 1.31486 1.19453 0.86288 0.79064 0.79666
0.81793 1.19403 1.19847 1.18257 1.21204 0.99701 1.00771 1.00310
1.17897 0.91416 0.95468 0.95041 1.20936 0.98784 0.98777 0.96724
1.20506 0.94700 0.99424 0.99064 1.20347 0.93816 1.04352 1.01799
1.20671 0.97969 0.96518 0.95389 1.18401 0.92487 1.01960 0.98846
1.23197 0.88823 0.97181 0.88516 1.67996 1.06746 1.33716 1.21068
0.91550 0.90109 0.91561 0.91367 0.91380 0.80408 0.87769 0.90457
0.85978 0.87178 0.88018 0.88158 0.88105 0.80979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.21 10.28 37.16 0.38 -0.82 16
2 C 0.07 0.78 6.00 37.16 0.22 1.01 16
3 O -0.29 -4.41 10.19 -17.99 -0.18 -4.59 16
4 C 0.48 8.00 8.48 -91.16 -0.77 7.23 16
5 N -0.52 -9.03 10.45 -14.44 -0.15 -9.18 16
6 C 0.19 3.13 10.82 -16.83 -0.18 2.95 16
7 C -0.15 -2.59 5.09 -104.64 -0.53 -3.12 16
8 C -0.05 -0.96 5.63 -103.14 -0.58 -1.54 16
9 C -0.12 -2.49 9.14 -39.05 -0.36 -2.85 16
10 C 0.10 2.36 5.55 -107.02 -0.59 1.77 16
11 C -0.45 -10.65 8.99 -37.82 -0.34 -10.99 16
12 H 0.08 1.84 7.91 -52.49 -0.42 1.43 16
13 C 0.07 1.69 5.09 -17.35 -0.09 1.61 16
14 N -0.78 -18.56 11.01 55.55 0.61 -17.95 16
15 Si 0.91 17.22 29.60 -169.99 -5.03 12.19 16
16 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16
17 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16
18 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16
19 C -0.20 -4.80 8.38 -38.31 -0.32 -5.13 16
20 C 0.00 0.05 5.74 -106.88 -0.61 -0.57 16
21 C -0.13 -2.69 9.78 -39.32 -0.38 -3.07 16
22 C -0.12 -2.13 9.95 -39.94 -0.40 -2.52 16
23 C -0.18 -3.24 9.96 -39.82 -0.40 -3.64 16
24 C -0.09 -1.62 8.75 -39.60 -0.35 -1.96 16
25 C -0.12 -2.41 5.89 -104.65 -0.62 -3.03 16
26 C 0.19 2.98 9.00 -16.83 -0.15 2.83 16
27 N -0.57 -9.00 9.20 -14.44 -0.13 -9.14 16
28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16
32 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16
33 H 0.18 2.61 8.06 -52.49 -0.42 2.18 16
34 H 0.10 2.01 8.03 -52.49 -0.42 1.59 16
35 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16
36 H 0.12 3.07 6.16 -52.48 -0.32 2.75 16
37 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16
38 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16
39 H 0.10 1.51 8.06 -52.48 -0.42 1.08 16
40 H 0.10 1.70 5.73 -52.49 -0.30 1.40 16
41 H 0.17 2.48 7.40 -52.48 -0.39 2.09 16
LS Contribution 350.64 15.07 5.28 5.28
Total: -1.00 -26.65 350.64 -10.46 -37.11
By element:
Atomic # 1 Polarization: 12.92 SS G_CDS: -4.78 Total: 8.14 kcal
Atomic # 6 Polarization: -15.79 SS G_CDS: -6.07 Total: -21.86 kcal
Atomic # 7 Polarization: -36.60 SS G_CDS: 0.33 Total: -36.27 kcal
Atomic # 8 Polarization: -4.41 SS G_CDS: -0.18 Total: -4.59 kcal
Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -26.65 -10.46 -37.11 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241554359.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.795 kcal
(2) G-P(sol) polarization free energy of solvation -26.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.144 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.689 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.51 seconds