Wall clock time and date at job start Tue Mar 31 2020 12:38:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 O 1.42902 * 109.47121 * 2 1
4 4 C 1.35432 * 117.00013 * 180.02562 * 3 2 1
5 5 N 1.32369 * 119.03986 * 180.02562 * 4 3 2
6 6 C 1.32124 * 120.90194 * 179.97438 * 5 4 3
7 7 C 1.39827 * 119.00997 * 359.97438 * 6 5 4
8 8 C 1.48153 * 120.87277 * 179.97438 * 7 6 5
9 9 C 1.36684 * 120.34050 * 310.02188 * 8 7 6
10 10 C 1.41115 * 120.58730 * 179.97438 * 9 8 7
11 11 C 1.41227 * 119.48633 * 179.97438 * 10 9 8
12 12 H 1.08000 * 120.00009 * 334.13572 * 11 10 9
13 13 C 1.39920 * 119.99669 * 154.12852 * 11 10 9
14 14 N 1.30833 * 120.00270 * 341.87589 * 13 11 10
15 15 Si 1.86799 * 119.99720 * 161.87216 * 13 11 10
16 16 H 1.48498 * 109.47118 * 94.61015 * 15 13 11
17 17 H 1.48500 * 109.47179 * 214.61526 * 15 13 11
18 18 H 1.48504 * 109.47161 * 334.60794 * 15 13 11
19 19 C 1.39965 * 121.02571 * 359.97438 * 10 9 8
20 20 C 1.39898 * 120.11022 * 0.03750 * 19 10 9
21 21 C 1.40860 * 121.13683 * 179.97438 * 20 19 10
22 22 C 1.36198 * 119.60226 * 180.02562 * 21 20 19
23 23 C 1.39243 * 120.93947 * 359.94852 * 22 21 20
24 24 C 1.36540 * 120.98610 * 0.02573 * 23 22 21
25 25 C 1.39815 * 119.73433 * 0.02562 * 24 23 22
26 26 C 1.39820 * 118.25837 * 0.24783 * 7 6 5
27 27 N 1.32131 * 119.01197 * 359.49870 * 26 7 6
28 28 H 1.08997 * 109.47198 * 60.00262 * 1 2 3
29 29 H 1.08999 * 109.46742 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.46881 * 300.00014 * 1 2 3
31 31 H 1.08999 * 109.47255 * 239.99635 * 2 1 3
32 32 H 1.09006 * 109.47112 * 119.99152 * 2 1 3
33 33 H 1.07995 * 120.50274 * 180.02562 * 6 5 4
34 34 H 1.07999 * 119.70593 * 359.97438 * 9 8 7
35 35 H 0.96998 * 120.00426 * 180.02562 * 14 13 11
36 36 H 1.08004 * 119.94638 * 180.02562 * 19 10 9
37 37 H 1.07994 * 120.20182 * 359.97438 * 21 20 19
38 38 H 1.07990 * 119.52861 * 179.97438 * 22 21 20
39 39 H 1.08005 * 119.50439 * 180.30857 * 23 22 21
40 40 H 1.08000 * 120.13602 * 179.97438 * 24 23 22
41 41 H 1.08004 * 120.49645 * 179.72464 * 26 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3490 1.5247 -0.0005
5 7 3.8344 2.7562 0.0000
6 6 5.1379 2.9718 0.0000
7 6 6.0065 1.8760 0.0000
8 6 7.4752 2.0701 -0.0006
9 6 8.0600 2.9124 -0.9044
10 6 9.4584 3.1016 -0.9092
11 6 10.0382 3.9769 -1.8537
12 1 9.5382 4.1669 -2.7920
13 6 11.2604 4.5980 -1.5739
14 7 11.6931 4.6648 -0.3410
15 14 12.2743 5.3316 -2.9606
16 1 11.9637 6.7780 -3.0893
17 1 13.7189 5.1602 -2.6620
18 1 11.9466 4.6397 -4.2331
19 6 10.2798 2.4352 0.0075
20 6 9.7193 1.5645 0.9483
21 6 10.5255 0.8824 1.8804
22 6 9.9469 0.0416 2.7822
23 6 8.5682 -0.1532 2.7973
24 6 7.7573 0.4924 1.9084
25 6 8.3147 1.3627 0.9668
26 6 5.4525 0.5923 -0.0053
27 7 4.1377 0.4616 0.0000
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.8934 -0.5139 -0.8899
32 1 1.8934 -0.5137 0.8901
33 1 5.5269 3.9793 0.0008
34 1 7.4464 3.4378 -1.6212
35 1 12.5402 5.0957 -0.1469
36 1 11.3480 2.5932 -0.0115
37 1 11.5960 1.0245 1.8795
38 1 10.5661 -0.4811 3.4960
39 1 8.1334 -0.8215 3.5258
40 1 6.6898 0.3308 1.9321
41 1 6.0898 -0.2797 -0.0100
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001241554359.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:38:50
Heat of formation + Delta-G solvation = 29.942379 kcal
Electronic energy + Delta-G solvation = -25210.109036 eV
Core-core repulsion = 21633.226151 eV
Total energy + Delta-G solvation = -3576.882885 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.127 amu
Computer time = 1.42 seconds
Orbital eigenvalues (eV)
-42.34573 -40.55103 -39.43786 -37.44191 -35.58652 -34.99268 -33.88219 -32.60012
-31.43819 -31.11242 -29.32519 -27.11538 -26.03895 -25.25670 -23.84753 -23.43404
-22.93385 -21.79841 -20.01105 -19.40329 -18.81840 -17.81303 -17.71559 -17.52642
-16.66551 -16.51574 -16.16146 -15.58998 -15.45624 -15.18454 -14.84274 -14.71125
-14.43712 -14.18169 -14.05360 -13.74782 -13.47448 -13.40565 -13.25329 -12.91376
-12.74782 -12.55578 -12.54224 -12.38545 -12.11343 -12.04343 -11.84978 -11.68342
-11.38612 -11.29191 -10.99464 -10.54734 -10.27780 -9.85552 -9.24756 -8.67293
-8.39456 -6.28799 -0.40369 -0.07630 0.20644 0.59646 1.36398 1.41055
1.47908 1.51892 1.54670 2.18433 2.30525 2.63685 2.92151 3.04200
3.46514 3.60085 3.67819 3.77679 4.02695 4.05672 4.10781 4.16748
4.30149 4.34226 4.41794 4.62979 4.69898 4.74382 4.78964 4.90249
4.93151 4.95230 5.06064 5.19068 5.20043 5.23380 5.32359 5.51872
5.60405 5.69244 5.73339 5.86244 5.93354 6.05782 6.09354 6.24506
6.43519 6.66097 6.87315 6.92758 6.95956 8.29593
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.014140 B = 0.003488 C = 0.002879
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1979.718127 B = 8024.879966 C = 9724.773266
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.063 3.937
3 O -0.304 6.304
4 C 0.478 3.522
5 N -0.540 5.540
6 C 0.196 3.804
7 C -0.165 4.165
8 C -0.031 4.031
9 C -0.137 4.137
10 C 0.077 3.923
11 C -0.483 4.483
12 H 0.082 0.918
13 C 0.036 3.964
14 N -0.813 5.813
15 Si 0.977 3.023
16 H -0.263 1.263
17 H -0.269 1.269
18 H -0.258 1.258
19 C -0.228 4.228
20 C -0.019 4.019
21 C -0.157 4.157
22 C -0.108 4.108
23 C -0.174 4.174
24 C -0.090 4.090
25 C -0.130 4.130
26 C 0.199 3.801
27 N -0.562 5.562
28 H 0.065 0.935
29 H 0.107 0.893
30 H 0.065 0.935
31 H 0.070 0.930
32 H 0.071 0.929
33 H 0.190 0.810
34 H 0.114 0.886
35 H 0.288 0.712
36 H 0.099 0.901
37 H 0.111 0.889
38 H 0.137 0.863
39 H 0.138 0.862
40 H 0.121 0.879
41 H 0.190 0.810
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.322 -8.390 1.863 14.214
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.012 4.012
3 O -0.206 6.206
4 C 0.176 3.824
5 N -0.265 5.265
6 C 0.031 3.969
7 C -0.170 4.170
8 C -0.033 4.033
9 C -0.156 4.156
10 C 0.075 3.925
11 C -0.511 4.511
12 H 0.101 0.899
13 C -0.181 4.181
14 N -0.438 5.438
15 Si 0.798 3.202
16 H -0.187 1.187
17 H -0.194 1.194
18 H -0.181 1.181
19 C -0.248 4.248
20 C -0.020 4.020
21 C -0.176 4.176
22 C -0.125 4.125
23 C -0.192 4.192
24 C -0.108 4.108
25 C -0.130 4.130
26 C 0.034 3.966
27 N -0.291 5.291
28 H 0.084 0.916
29 H 0.126 0.874
30 H 0.085 0.915
31 H 0.089 0.911
32 H 0.090 0.910
33 H 0.206 0.794
34 H 0.132 0.868
35 H 0.099 0.901
36 H 0.117 0.883
37 H 0.129 0.871
38 H 0.155 0.845
39 H 0.156 0.844
40 H 0.139 0.861
41 H 0.207 0.793
Dipole moment (debyes) X Y Z Total
from point charges -12.495 -8.281 2.007 15.124
hybrid contribution 1.904 0.714 -0.542 2.104
sum -10.591 -7.566 1.466 13.099
Atomic orbital electron populations
1.21857 0.90318 1.04655 1.03453 1.23031 0.96568 0.78550 1.03068
1.86064 1.14213 1.33429 1.86938 1.20906 0.86069 0.85593 0.89804
1.67574 1.16130 1.22561 1.20227 1.23523 0.85447 1.00465 0.87504
1.20312 0.94298 0.95801 1.06589 1.18863 0.89065 0.98562 0.96773
1.21232 0.94594 0.99961 0.99789 1.17664 0.91024 0.91016 0.92828
1.19900 1.04970 1.23082 1.03185 0.89950 1.26704 0.98125 0.94937
0.98286 1.69894 1.19822 1.32857 1.21207 0.85264 0.77418 0.78904
0.78647 1.18734 1.19396 1.18135 1.21101 0.98771 1.02771 1.02157
1.18162 0.92772 0.95680 0.95347 1.21090 0.99013 0.99942 0.97505
1.20918 0.95522 0.97863 0.98233 1.20841 0.93543 1.03458 1.01382
1.20892 0.99203 0.95866 0.94838 1.18704 0.92030 1.02634 0.99670
1.23412 0.89022 0.97092 0.87088 1.68102 1.06467 1.33200 1.21286
0.91593 0.87404 0.91547 0.91150 0.91038 0.79353 0.86755 0.90080
0.88316 0.87110 0.84519 0.84397 0.86088 0.79333
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.93 10.28 71.98 0.74 -1.19 16
2 C 0.06 1.24 6.00 71.98 0.43 1.68 16
3 O -0.30 -8.61 10.19 -87.27 -0.89 -9.50 16
4 C 0.48 15.12 8.48 180.54 1.53 16.65 16
5 N -0.54 -18.02 10.45 -312.54 -3.27 -21.29 16
6 C 0.20 6.27 10.82 85.03 0.92 7.19 16
7 C -0.17 -5.47 5.09 -19.88 -0.10 -5.57 16
8 C -0.03 -1.23 5.63 -18.90 -0.11 -1.33 16
9 C -0.14 -6.00 9.14 22.61 0.21 -5.79 16
10 C 0.08 3.88 5.55 -21.42 -0.12 3.76 16
11 C -0.48 -24.33 8.99 23.41 0.21 -24.12 16
12 H 0.08 3.94 7.91 -2.91 -0.02 3.92 16
13 C 0.04 1.72 5.09 85.25 0.43 2.15 16
14 N -0.81 -41.13 11.01 21.82 0.24 -40.89 16
15 Si 0.98 36.58 29.60 68.60 2.03 38.61 16
16 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16
17 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16
18 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16
19 C -0.23 -11.62 8.38 23.09 0.19 -11.42 16
20 C -0.02 -0.89 5.74 -21.33 -0.12 -1.01 16
21 C -0.16 -6.29 9.78 22.44 0.22 -6.07 16
22 C -0.11 -3.54 9.95 22.04 0.22 -3.32 16
23 C -0.17 -5.43 9.96 22.11 0.22 -5.21 16
24 C -0.09 -3.09 8.75 22.25 0.19 -2.89 16
25 C -0.13 -5.32 5.89 -19.89 -0.12 -5.44 16
26 C 0.20 5.88 9.00 85.03 0.77 6.65 16
27 N -0.56 -16.59 9.20 -312.54 -2.87 -19.46 16
28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
29 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16
30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
31 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16
32 H 0.07 1.37 8.09 -2.38 -0.02 1.35 16
33 H 0.19 5.47 8.06 -2.91 -0.02 5.44 16
34 H 0.11 4.59 8.03 -2.91 -0.02 4.57 16
35 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16
36 H 0.10 5.37 6.16 -2.91 -0.02 5.35 16
37 H 0.11 4.28 8.06 -2.91 -0.02 4.25 16
38 H 0.14 3.54 8.06 -2.92 -0.02 3.51 16
39 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16
40 H 0.12 3.65 5.73 -2.91 -0.02 3.63 16
41 H 0.19 4.91 7.40 -2.91 -0.02 4.89 16
Total: -1.00 -59.78 350.64 2.02 -57.76
By element:
Atomic # 1 Polarization: 28.99 SS G_CDS: 1.06 Total: 30.05 kcal
Atomic # 6 Polarization: -40.99 SS G_CDS: 5.72 Total: -35.27 kcal
Atomic # 7 Polarization: -75.74 SS G_CDS: -5.90 Total: -81.64 kcal
Atomic # 8 Polarization: -8.61 SS G_CDS: -0.89 Total: -9.50 kcal
Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal
Total: -59.78 2.02 -57.76 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241554359.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.699 kcal
(2) G-P(sol) polarization free energy of solvation -59.778 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.922 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.757 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.942 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.42 seconds