Wall clock time and date at job start Tue Mar 31 2020 13:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30782 * 1 3 3 Si 1.86800 * 119.99586 * 2 1 4 4 H 1.48503 * 109.47031 * 275.29498 * 3 2 1 5 5 H 1.48498 * 109.47703 * 35.29834 * 3 2 1 6 6 H 1.48498 * 109.46728 * 155.29838 * 3 2 1 7 7 C 1.40069 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00626 * 342.82663 * 7 2 1 9 9 C 1.40839 * 119.99897 * 162.83045 * 7 2 1 10 10 C 1.40336 * 120.40712 * 329.15113 * 9 7 2 11 11 C 1.40044 * 117.97720 * 179.74637 * 10 9 7 12 12 C 1.40783 * 121.39462 * 180.27883 * 11 10 9 13 13 C 1.36134 * 119.46348 * 180.02562 * 12 11 10 14 14 C 1.39157 * 121.46444 * 359.95571 * 13 12 11 15 15 C 1.36257 * 121.74535 * 0.04241 * 14 13 12 16 16 C 1.40453 * 119.71191 * 359.97438 * 15 14 13 17 17 N 1.33709 * 120.97723 * 180.02562 * 16 15 14 18 18 C 1.31619 * 121.72551 * 179.97438 * 17 16 15 19 19 C 1.47846 * 119.44558 * 180.02562 * 18 17 16 20 20 C 1.41143 * 126.37681 * 144.68577 * 19 18 17 21 21 N 1.30531 * 108.09160 * 179.81486 * 20 19 18 22 22 N 1.39942 * 108.85590 * 0.44469 * 21 20 19 23 23 C 1.46505 * 125.79910 * 179.68905 * 22 21 20 24 24 C 1.53936 * 113.73612 * 191.75227 * 23 22 21 25 25 N 1.47957 * 86.18000 * 221.92564 * 24 23 22 26 26 C 1.47961 * 90.76588 * 24.68899 * 25 24 23 27 27 C 1.34580 * 108.40216 * 359.71424 * 22 21 20 28 28 H 0.97006 * 119.99959 * 359.97438 * 1 2 3 29 29 H 1.08001 * 121.01328 * 0.02927 * 10 9 7 30 30 H 1.07992 * 120.26866 * 359.97438 * 12 11 10 31 31 H 1.08003 * 119.27000 * 180.02562 * 13 12 11 32 32 H 1.07991 * 119.12530 * 180.02562 * 14 13 12 33 33 H 1.08002 * 120.14047 * 179.97438 * 15 14 13 34 34 H 1.08002 * 125.95457 * 359.97438 * 20 19 18 35 35 H 1.08999 * 112.93699 * 323.46176 * 23 22 21 36 36 H 1.09001 * 113.75628 * 336.24272 * 24 23 22 37 37 H 1.09000 * 113.75388 * 107.60181 * 24 23 22 38 38 H 1.00901 * 110.99752 * 271.79164 * 25 24 23 39 39 H 1.08997 * 113.75513 * 220.99048 * 26 25 24 40 40 H 1.09005 * 113.75456 * 89.62712 * 26 25 24 41 41 H 1.08004 * 126.29739 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.3773 2.1111 -1.3941 5 1 1.4997 2.6179 0.8090 6 1 3.5907 1.4105 0.5851 7 6 2.0081 -1.2131 -0.0005 8 1 1.5043 -2.1277 0.2752 9 6 3.3694 -1.2401 -0.3606 10 6 3.8773 -0.3175 -1.2881 11 6 5.2396 -0.3868 -1.6052 12 6 5.8257 0.5068 -2.5217 13 6 7.1540 0.4037 -2.8014 14 6 7.9496 -0.5669 -2.2003 15 6 7.4393 -1.4592 -1.3058 16 6 6.0758 -1.4083 -0.9726 17 7 5.5486 -2.2710 -0.0976 18 6 4.2732 -2.2364 0.2257 19 6 3.7434 -3.2145 1.1996 20 6 2.7349 -2.9788 2.1585 21 7 2.5434 -4.0844 2.8254 22 7 3.4162 -5.0636 2.3379 23 6 3.5178 -6.4410 2.8267 24 6 4.7512 -7.1962 2.2992 25 7 3.8450 -8.3526 2.1237 26 6 2.6787 -7.4481 2.0197 27 6 4.1468 -4.5250 1.3443 28 1 -0.4850 0.8401 0.0004 29 1 3.2380 0.4264 -1.7402 30 1 5.2262 1.2675 -2.9995 31 1 7.6004 1.0911 -3.5047 32 1 8.9993 -0.6145 -2.4496 33 1 8.0805 -2.2022 -0.8551 34 1 2.2109 -2.0469 2.3118 35 1 3.3808 -6.5203 3.9051 36 1 5.1422 -6.7986 1.3627 37 1 5.5242 -7.3541 3.0513 38 1 3.7989 -8.9069 2.9656 39 1 1.7958 -7.8075 2.5484 40 1 2.4636 -7.1243 1.0013 41 1 4.9085 -5.0270 0.7662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241598408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:47 Heat of formation + Delta-G solvation = 163.069013 kcal Electronic energy + Delta-G solvation = -25731.407641 eV Core-core repulsion = 22192.590311 eV Total energy + Delta-G solvation = -3538.817330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.05961 -39.34501 -38.86329 -36.08094 -34.14818 -32.21639 -31.93642 -30.54463 -29.79195 -28.28304 -26.40777 -26.26338 -25.50754 -23.37547 -21.88618 -21.50951 -20.78275 -20.33120 -19.40028 -18.21277 -17.34618 -16.94982 -16.29959 -16.09709 -15.29944 -14.89103 -14.67758 -14.25193 -13.76543 -13.67887 -13.47924 -13.24341 -13.12063 -12.83090 -12.80019 -12.66514 -12.43365 -12.08028 -11.97358 -11.88623 -11.39889 -11.28804 -11.09562 -10.84184 -10.64143 -10.45115 -10.21470 -9.97480 -9.65540 -9.17338 -9.11942 -8.89469 -8.45564 -8.23504 -7.44245 -7.24317 -7.11217 -4.67897 1.32718 1.83375 2.30328 2.73676 2.94122 3.02882 3.08511 3.17062 3.37943 3.51639 3.81348 3.90336 4.02454 4.45668 4.56665 4.81514 5.04459 5.14803 5.20486 5.28721 5.31673 5.42289 5.49471 5.50128 5.55971 5.59057 5.73997 5.92658 5.95871 6.08403 6.09938 6.17903 6.44251 6.56044 6.57123 6.84030 6.85425 6.91242 7.07038 7.14219 7.20591 7.25443 7.35611 7.49463 7.62148 7.72780 8.02107 8.18714 8.27698 8.43813 9.08680 9.72821 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011217 B = 0.004807 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.595531 B = 5823.005524 C = 7965.146612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.405 4.405 8 H 0.106 0.894 9 C 0.058 3.942 10 C -0.262 4.262 11 C -0.023 4.023 12 C -0.146 4.146 13 C -0.109 4.109 14 C -0.181 4.181 15 C -0.059 4.059 16 C 0.029 3.971 17 N -0.466 5.466 18 C 0.190 3.810 19 C -0.160 4.160 20 C 0.094 3.906 21 N -0.316 5.316 22 N -0.372 5.372 23 C 0.099 3.901 24 C 0.014 3.986 25 N -0.650 5.650 26 C 0.012 3.988 27 C 0.073 3.927 28 H 0.292 0.708 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.195 0.805 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.341 0.659 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.804 -7.491 3.493 10.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.140 4.140 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.164 1.164 7 C -0.432 4.432 8 H 0.124 0.876 9 C 0.052 3.948 10 C -0.286 4.286 11 C -0.025 4.025 12 C -0.165 4.165 13 C -0.127 4.127 14 C -0.201 4.201 15 C -0.078 4.078 16 C -0.091 4.091 17 N -0.173 5.173 18 C 0.031 3.969 19 C -0.172 4.172 20 C -0.094 4.094 21 N -0.135 5.135 22 N -0.154 5.154 23 C -0.005 4.005 24 C -0.116 4.116 25 N -0.277 5.277 26 C -0.119 4.119 27 C -0.074 4.074 28 H 0.103 0.897 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.211 0.789 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.155 0.845 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.672 -9.014 4.007 11.379 hybrid contribution -0.120 2.300 -0.234 2.315 sum 5.552 -6.714 3.773 9.494 Atomic orbital electron populations 1.69649 1.08187 1.31133 1.31205 1.26300 0.94824 1.02049 0.90856 0.86225 0.81379 0.79249 0.79434 1.19229 1.21490 1.16442 1.19628 0.92140 0.96306 1.35133 0.87577 1.19266 0.93472 0.91329 0.90743 1.21014 0.94003 1.07387 1.06228 1.19501 0.93866 0.94131 0.94998 1.20830 0.95087 1.00064 1.00547 1.20490 0.94063 0.98387 0.99771 1.20273 0.99028 0.98957 1.01839 1.20484 0.92953 0.97829 0.96501 1.19282 0.93656 0.96155 0.99994 1.67478 1.13130 1.23355 1.13287 1.20287 0.87877 0.94669 0.94103 1.18710 1.03270 0.92734 1.02472 1.24300 0.95611 0.96986 0.92480 1.77119 1.14872 0.97608 1.23900 1.48279 1.29809 1.09571 1.27729 1.24867 0.97782 0.77336 1.00538 1.24212 0.95140 0.89690 1.02597 1.65137 1.04909 1.15814 1.41872 1.24255 0.94708 0.90848 1.02050 1.22687 0.97532 0.94291 0.92902 0.89706 0.86915 0.87197 0.87725 0.87574 0.86767 0.78859 0.86562 0.87140 0.89410 0.84467 0.89737 0.87530 0.81047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.68 13.93 55.55 0.77 -17.90 16 2 C 0.08 1.95 5.42 -17.31 -0.09 1.86 16 3 Si 0.91 19.52 24.53 -169.99 -4.17 15.35 16 4 H -0.27 -5.62 6.72 56.52 0.38 -5.24 16 5 H -0.29 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.24 -5.47 6.84 56.52 0.39 -5.08 16 7 C -0.40 -9.74 7.46 -37.91 -0.28 -10.02 16 8 H 0.11 2.65 6.53 -52.49 -0.34 2.31 16 9 C 0.06 1.38 5.24 -104.69 -0.55 0.83 16 10 C -0.26 -6.22 7.00 -38.12 -0.27 -6.49 16 11 C -0.02 -0.51 5.87 -104.98 -0.62 -1.13 16 12 C -0.15 -2.91 9.80 -39.38 -0.39 -3.30 16 13 C -0.11 -1.91 9.91 -40.00 -0.40 -2.30 16 14 C -0.18 -3.13 9.90 -39.95 -0.40 -3.52 16 15 C -0.06 -1.13 9.98 -39.46 -0.39 -1.52 16 16 C 0.03 0.64 6.74 -82.94 -0.56 0.08 16 17 N -0.47 -10.51 10.16 -4.84 -0.05 -10.56 16 18 C 0.19 4.32 6.86 -80.60 -0.55 3.77 16 19 C -0.16 -3.24 5.59 -105.00 -0.59 -3.82 16 20 C 0.09 1.85 9.95 -17.00 -0.17 1.68 16 21 N -0.32 -5.84 12.51 30.84 0.39 -5.45 16 22 N -0.37 -5.82 3.79 -55.41 -0.21 -6.03 16 23 C 0.10 1.10 5.20 -69.63 -0.36 0.74 16 24 C 0.01 0.13 8.25 -2.77 -0.02 0.11 16 25 N -0.65 -5.87 8.55 -117.17 -1.00 -6.87 16 26 C 0.01 0.12 8.70 -2.76 -0.02 0.10 16 27 C 0.07 1.24 10.63 -16.48 -0.18 1.07 16 28 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 29 H 0.11 2.64 4.85 -52.49 -0.25 2.38 16 30 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 32 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.19 3.85 6.89 -52.49 -0.36 3.49 16 35 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.11 1.11 6.28 -51.93 -0.33 0.79 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.34 2.26 8.89 -39.29 -0.35 1.91 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.17 2.56 6.65 -52.48 -0.35 2.21 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -28.06 339.84 -9.52 -37.58 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.54 Total: 10.64 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -5.83 Total: -21.87 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.10 Total: -46.82 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.17 Total: 15.35 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.06 -9.52 -37.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241598408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.649 kcal (2) G-P(sol) polarization free energy of solvation -28.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds