Wall clock time and date at job start Tue Mar 31 2020 13:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30782 * 1 3 3 Si 1.86800 * 119.99586 * 2 1 4 4 H 1.48503 * 109.47031 * 275.29498 * 3 2 1 5 5 H 1.48498 * 109.47703 * 35.29834 * 3 2 1 6 6 H 1.48498 * 109.46728 * 155.29838 * 3 2 1 7 7 C 1.40069 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00626 * 342.82663 * 7 2 1 9 9 C 1.40839 * 119.99897 * 162.83045 * 7 2 1 10 10 C 1.40336 * 120.40712 * 329.15113 * 9 7 2 11 11 C 1.40044 * 117.97720 * 179.74637 * 10 9 7 12 12 C 1.40783 * 121.39462 * 180.27883 * 11 10 9 13 13 C 1.36134 * 119.46348 * 180.02562 * 12 11 10 14 14 C 1.39157 * 121.46444 * 359.95571 * 13 12 11 15 15 C 1.36257 * 121.74535 * 0.04241 * 14 13 12 16 16 C 1.40453 * 119.71191 * 359.97438 * 15 14 13 17 17 N 1.33709 * 120.97723 * 180.02562 * 16 15 14 18 18 C 1.31619 * 121.72551 * 179.97438 * 17 16 15 19 19 C 1.47846 * 119.44558 * 180.02562 * 18 17 16 20 20 C 1.41143 * 126.37681 * 144.68577 * 19 18 17 21 21 N 1.30531 * 108.09160 * 179.81486 * 20 19 18 22 22 N 1.39942 * 108.85590 * 0.44469 * 21 20 19 23 23 C 1.46505 * 125.79910 * 179.68905 * 22 21 20 24 24 C 1.53936 * 113.73612 * 191.75227 * 23 22 21 25 25 N 1.47957 * 86.18000 * 221.92564 * 24 23 22 26 26 C 1.47961 * 90.76588 * 24.68899 * 25 24 23 27 27 C 1.34580 * 108.40216 * 359.71424 * 22 21 20 28 28 H 0.97006 * 119.99959 * 359.97438 * 1 2 3 29 29 H 1.08001 * 121.01328 * 0.02927 * 10 9 7 30 30 H 1.07992 * 120.26866 * 359.97438 * 12 11 10 31 31 H 1.08003 * 119.27000 * 180.02562 * 13 12 11 32 32 H 1.07991 * 119.12530 * 180.02562 * 14 13 12 33 33 H 1.08002 * 120.14047 * 179.97438 * 15 14 13 34 34 H 1.08002 * 125.95457 * 359.97438 * 20 19 18 35 35 H 1.08999 * 112.93699 * 323.46176 * 23 22 21 36 36 H 1.09001 * 113.75628 * 336.24272 * 24 23 22 37 37 H 1.09000 * 113.75388 * 107.60181 * 24 23 22 38 38 H 1.00901 * 110.99752 * 271.79164 * 25 24 23 39 39 H 1.08997 * 113.75513 * 220.99048 * 26 25 24 40 40 H 1.09005 * 113.75456 * 89.62712 * 26 25 24 41 41 H 1.08004 * 126.29739 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.3773 2.1111 -1.3941 5 1 1.4997 2.6179 0.8090 6 1 3.5907 1.4105 0.5851 7 6 2.0081 -1.2131 -0.0005 8 1 1.5043 -2.1277 0.2752 9 6 3.3694 -1.2401 -0.3606 10 6 3.8773 -0.3175 -1.2881 11 6 5.2396 -0.3868 -1.6052 12 6 5.8257 0.5068 -2.5217 13 6 7.1540 0.4037 -2.8014 14 6 7.9496 -0.5669 -2.2003 15 6 7.4393 -1.4592 -1.3058 16 6 6.0758 -1.4083 -0.9726 17 7 5.5486 -2.2710 -0.0976 18 6 4.2732 -2.2364 0.2257 19 6 3.7434 -3.2145 1.1996 20 6 2.7349 -2.9788 2.1585 21 7 2.5434 -4.0844 2.8254 22 7 3.4162 -5.0636 2.3379 23 6 3.5178 -6.4410 2.8267 24 6 4.7512 -7.1962 2.2992 25 7 3.8450 -8.3526 2.1237 26 6 2.6787 -7.4481 2.0197 27 6 4.1468 -4.5250 1.3443 28 1 -0.4850 0.8401 0.0004 29 1 3.2380 0.4264 -1.7402 30 1 5.2262 1.2675 -2.9995 31 1 7.6004 1.0911 -3.5047 32 1 8.9993 -0.6145 -2.4496 33 1 8.0805 -2.2022 -0.8551 34 1 2.2109 -2.0469 2.3118 35 1 3.3808 -6.5203 3.9051 36 1 5.1422 -6.7986 1.3627 37 1 5.5242 -7.3541 3.0513 38 1 3.7989 -8.9069 2.9656 39 1 1.7958 -7.8075 2.5484 40 1 2.4636 -7.1243 1.0013 41 1 4.9085 -5.0270 0.7662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241598408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:46 Heat of formation + Delta-G solvation = 144.170116 kcal Electronic energy + Delta-G solvation = -25732.227159 eV Core-core repulsion = 22192.590311 eV Total energy + Delta-G solvation = -3539.636848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.32812 -40.73459 -40.07004 -37.65435 -35.87827 -33.91017 -33.24833 -32.03736 -31.38289 -29.73392 -27.39451 -27.23447 -27.12984 -24.82623 -23.53947 -22.78100 -22.31900 -21.75114 -20.58807 -19.84467 -18.76556 -17.90341 -17.72722 -17.63437 -16.83552 -16.29507 -16.06463 -15.62130 -15.24173 -15.10096 -14.83890 -14.69151 -14.47424 -14.36545 -14.09584 -13.87792 -13.73696 -13.60848 -13.40139 -12.96426 -12.93595 -12.76950 -12.41864 -12.22814 -12.15940 -12.03442 -11.79593 -11.55642 -11.42448 -10.79978 -10.36921 -10.11449 -9.93036 -9.68091 -9.09573 -9.01787 -8.64374 -6.48075 -0.25794 0.19813 0.90548 1.20759 1.30676 1.37170 1.47931 1.53600 1.76018 2.07509 2.31420 2.73468 2.86284 3.11604 3.54318 3.61613 3.68186 3.85146 3.92720 3.95701 4.15194 4.22179 4.28382 4.45887 4.48815 4.50226 4.56025 4.60749 4.63203 4.71326 4.74287 4.87652 4.91637 4.95784 5.03623 5.28358 5.31479 5.46010 5.54348 5.67212 5.75769 5.83115 5.90058 6.08182 6.16598 6.23839 6.25031 6.55025 6.64685 6.74839 7.37774 8.01449 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011217 B = 0.004807 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.595531 B = 5823.005524 C = 7965.146612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.061 3.939 3 Si 0.955 3.045 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.425 4.425 8 H 0.084 0.916 9 C 0.041 3.959 10 C -0.274 4.274 11 C -0.053 4.053 12 C -0.162 4.162 13 C -0.098 4.098 14 C -0.158 4.158 15 C -0.074 4.074 16 C 0.009 3.991 17 N -0.471 5.471 18 C 0.179 3.821 19 C -0.195 4.195 20 C 0.081 3.919 21 N -0.327 5.327 22 N -0.357 5.357 23 C 0.084 3.916 24 C 0.023 3.977 25 N -0.649 5.649 26 C 0.015 3.985 27 C 0.093 3.907 28 H 0.300 0.700 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.135 0.865 34 H 0.179 0.821 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.358 0.642 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.179 -8.305 2.939 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.159 4.159 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.453 4.453 8 H 0.102 0.898 9 C 0.035 3.965 10 C -0.299 4.299 11 C -0.055 4.055 12 C -0.181 4.181 13 C -0.116 4.116 14 C -0.178 4.178 15 C -0.092 4.092 16 C -0.111 4.111 17 N -0.178 5.178 18 C 0.020 3.980 19 C -0.208 4.208 20 C -0.106 4.106 21 N -0.148 5.148 22 N -0.138 5.138 23 C -0.019 4.019 24 C -0.108 4.108 25 N -0.278 5.278 26 C -0.115 4.115 27 C -0.057 4.057 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.153 0.847 34 H 0.196 0.804 35 H 0.153 0.847 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.174 0.826 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 9.025 -9.852 3.475 13.806 hybrid contribution -0.841 2.409 -0.149 2.556 sum 8.184 -7.444 3.326 11.552 Atomic orbital electron populations 1.69652 1.08786 1.32033 1.33384 1.26678 0.95182 1.03467 0.90546 0.85586 0.79381 0.77565 0.79523 1.18655 1.19885 1.18913 1.19435 0.92578 0.95921 1.37362 0.89841 1.19459 0.93650 0.92252 0.91117 1.21144 0.94977 1.07414 1.06359 1.19821 0.93689 0.95561 0.96452 1.21094 0.96662 1.00016 1.00289 1.21002 0.92928 0.98399 0.99244 1.20844 1.01079 0.96740 0.99149 1.20815 0.91718 0.99252 0.97433 1.19881 0.95246 0.96017 0.99945 1.67542 1.12772 1.23808 1.13712 1.20542 0.87939 0.94988 0.94487 1.18764 1.04773 0.93981 1.03260 1.24081 0.96032 0.97166 0.93275 1.77038 1.15753 0.97799 1.24194 1.48689 1.28037 1.10500 1.26553 1.25542 0.99787 0.74715 1.01830 1.24230 0.94967 0.88758 1.02806 1.65094 1.04077 1.15503 1.43144 1.24150 0.95777 0.90781 1.00837 1.22910 0.97086 0.93176 0.92494 0.88899 0.87379 0.86065 0.83479 0.83139 0.84716 0.80380 0.84745 0.87961 0.86733 0.82553 0.88185 0.89653 0.78745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.15 13.93 21.85 0.30 -40.85 16 2 C 0.06 3.03 5.42 85.29 0.46 3.50 16 3 Si 0.95 41.88 24.53 68.60 1.68 43.56 16 4 H -0.26 -11.04 6.72 99.48 0.67 -10.37 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.26 -12.48 6.84 99.48 0.68 -11.80 16 7 C -0.42 -22.01 7.46 23.35 0.17 -21.84 16 8 H 0.08 4.58 6.53 -2.91 -0.02 4.56 16 9 C 0.04 2.06 5.24 -19.91 -0.10 1.96 16 10 C -0.27 -13.51 7.00 23.22 0.16 -13.34 16 11 C -0.05 -2.42 5.87 -20.10 -0.12 -2.54 16 12 C -0.16 -6.12 9.80 22.40 0.22 -5.90 16 13 C -0.10 -2.99 9.91 22.00 0.22 -2.77 16 14 C -0.16 -4.69 9.90 22.03 0.22 -4.47 16 15 C -0.07 -2.61 9.98 22.35 0.22 -2.39 16 16 C 0.01 0.39 6.74 41.52 0.28 0.67 16 17 N -0.47 -21.51 10.16 -169.21 -1.72 -23.23 16 18 C 0.18 8.51 6.86 43.94 0.30 8.81 16 19 C -0.20 -8.28 5.59 -20.11 -0.11 -8.39 16 20 C 0.08 3.42 9.95 85.60 0.85 4.27 16 21 N -0.33 -12.47 12.51 -56.33 -0.70 -13.18 16 22 N -0.36 -11.05 3.79 -329.23 -1.25 -12.30 16 23 C 0.08 1.71 5.20 46.56 0.24 1.96 16 24 C 0.02 0.36 8.25 86.41 0.71 1.07 16 25 N -0.65 -10.05 8.55 -524.61 -4.49 -14.54 16 26 C 0.02 0.29 8.70 86.41 0.75 1.04 16 27 C 0.09 3.17 10.63 84.19 0.90 4.06 16 28 H 0.30 13.61 8.30 -92.70 -0.77 12.84 16 29 H 0.11 5.26 4.85 -2.91 -0.01 5.25 16 30 H 0.12 4.21 8.06 -2.91 -0.02 4.18 16 31 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 32 H 0.15 3.21 8.06 -2.92 -0.02 3.18 16 33 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 34 H 0.18 7.89 6.89 -2.91 -0.02 7.87 16 35 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.10 1.82 6.28 -2.39 -0.01 1.81 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.36 3.60 8.89 -89.69 -0.80 2.80 16 39 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.20 5.61 6.65 -2.91 -0.02 5.59 16 Total: -1.00 -64.28 339.84 -0.56 -64.84 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.23 Total: 29.99 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 5.38 Total: -34.31 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -7.85 Total: -104.09 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.68 Total: 43.56 kcal Total: -64.28 -0.56 -64.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241598408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.010 kcal (2) G-P(sol) polarization free energy of solvation -64.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds