Wall clock time and date at job start Tue Mar 31 2020 12:36:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 N 1.46503 * 109.47117 * 2 1
4 4 C 1.34776 * 120.00200 * 179.97438 * 3 2 1
5 5 O 1.21576 * 119.99799 * 0.02562 * 4 3 2
6 6 C 1.47724 * 120.00429 * 179.97438 * 4 3 2
7 7 C 1.39754 * 120.00812 * 180.02562 * 6 4 3
8 8 C 1.37599 * 119.99795 * 179.97438 * 7 6 4
9 9 C 1.39724 * 120.00269 * 359.97438 * 8 7 6
10 10 C 1.47933 * 119.99782 * 180.02562 * 9 8 7
11 11 C 1.40021 * 119.49901 * 359.97438 * 10 9 8
12 12 C 1.36006 * 121.18154 * 179.75421 * 11 10 9
13 13 C 1.41046 * 120.11271 * 0.52732 * 12 11 10
14 14 C 1.40435 * 120.48497 * 179.75964 * 13 12 11
15 15 H 1.08002 * 120.00206 * 154.42575 * 14 13 12
16 16 C 1.40363 * 119.99791 * 334.42791 * 14 13 12
17 17 N 1.30591 * 120.00547 * 334.69182 * 16 14 13
18 18 Si 1.86804 * 119.99906 * 154.69364 * 16 14 13
19 19 H 1.48497 * 109.47116 * 179.97438 * 18 16 14
20 20 H 1.48498 * 109.46974 * 299.99914 * 18 16 14
21 21 H 1.48498 * 109.47267 * 59.99901 * 18 16 14
22 22 C 1.46652 * 119.03006 * 359.48336 * 13 12 11
23 23 C 1.43192 * 120.56119 * 180.22666 * 22 13 12
24 24 N 9.72929 * 114.72989 * 179.97438 * 4 1 2
25 25 C 1.39061 * 118.87264 * 0.25606 * 22 13 12
26 26 C 1.39727 * 120.00900 * 0.27375 * 9 8 7
27 27 C 1.37605 * 120.00279 * 359.45113 * 26 9 8
28 28 H 1.09011 * 109.47480 * 299.99807 * 1 2 3
29 29 H 1.08997 * 109.47325 * 60.00074 * 1 2 3
30 30 H 1.09003 * 109.47120 * 180.02562 * 1 2 3
31 31 H 1.08996 * 109.47504 * 240.00221 * 2 1 3
32 32 H 1.09006 * 109.47247 * 119.99689 * 2 1 3
33 33 H 0.97001 * 120.00174 * 0.02562 * 3 2 1
34 34 H 1.07997 * 119.99948 * 359.96120 * 7 6 4
35 35 H 1.08004 * 119.99609 * 180.02562 * 8 7 6
36 36 H 1.07995 * 119.40417 * 0.02562 * 11 10 9
37 37 H 1.08007 * 119.94049 * 180.28807 * 12 11 10
38 38 H 0.97009 * 119.99434 * 354.20411 * 17 16 14
39 39 H 1.07998 * 120.10033 * 180.02562 * 25 22 13
40 40 H 1.07995 * 119.99886 * 179.70496 * 26 9 8
41 41 H 1.07991 * 120.00529 * 180.27411 * 27 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 3.3433 1.6276 0.0005
5 8 4.1333 0.7035 0.0005
6 6 3.8358 3.0203 -0.0001
7 6 5.2098 3.2758 -0.0001
8 6 5.6682 4.5732 -0.0011
9 6 4.7602 5.6351 -0.0027
10 6 5.2532 7.0298 -0.0045
11 6 6.6320 7.2737 -0.0039
12 6 7.1228 8.5421 -0.0104
13 6 6.2402 9.6424 -0.0067
14 6 6.7385 10.9554 -0.0083
15 1 6.1397 11.7597 -0.4095
16 6 8.0147 11.2223 0.5115
17 7 8.5329 10.4290 1.4101
18 14 8.9720 12.7125 -0.0821
19 1 10.2810 12.7704 0.6166
20 1 9.1960 12.6058 -1.5462
21 1 8.1996 13.9463 0.2118
22 6 4.7947 9.3952 -0.0073
23 6 3.8692 10.4878 -0.0085
24 7 3.1349 11.3546 -0.0003
25 6 4.3381 8.0817 -0.0061
26 6 3.3864 5.3799 0.0025
27 6 2.9276 4.0826 -0.0022
28 1 -0.3634 0.5138 0.8901
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8901
33 1 1.3879 2.1185 0.0004
34 1 5.9116 2.4550 0.0010
35 1 6.7301 4.7706 -0.0015
36 1 7.3180 6.4396 -0.0026
37 1 8.1901 8.7072 -0.0146
38 1 8.0044 9.7045 1.7801
39 1 3.2777 7.8768 -0.0069
40 1 2.6847 6.2008 0.0061
41 1 1.8658 3.8853 -0.0026
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001241617094.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:36:21
Heat of formation + Delta-G solvation = 12.388148 kcal
Electronic energy + Delta-G solvation = -24239.745601 eV
Core-core repulsion = 20662.101507 eV
Total energy + Delta-G solvation = -3577.644094 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.127 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.07832 -38.79306 -37.54337 -35.42851 -35.38354 -34.68185 -32.06236 -31.15116
-30.63442 -29.89220 -28.83137 -26.00091 -23.90265 -23.33061 -22.60078 -21.67663
-20.93873 -20.16725 -18.70222 -17.92216 -17.32300 -16.24283 -15.66085 -15.52028
-15.06298 -14.90911 -14.59921 -14.31552 -14.06813 -13.82320 -13.50649 -13.46647
-13.10114 -12.91038 -12.69766 -12.56433 -12.46440 -12.21468 -12.09736 -11.92828
-11.77705 -11.66370 -11.51580 -11.13434 -11.03271 -10.81988 -10.67185 -10.06823
-10.02275 -9.87724 -9.60345 -9.25627 -8.94557 -8.79140 -8.18616 -7.85777
-7.51272 -5.01717 0.90478 1.65967 1.95557 2.33943 2.87989 2.91269
3.10406 3.10587 3.18494 3.61166 3.67061 3.82903 4.17712 4.30721
4.62279 4.79150 4.86144 4.94228 5.02027 5.06475 5.10291 5.15843
5.42813 5.50244 5.52235 5.60960 5.65753 5.69902 5.74587 5.84867
6.15768 6.23481 6.29130 6.40394 6.44663 6.51679 6.59367 6.73889
6.81606 7.05566 7.10625 7.22522 7.29901 7.41980 7.42820 7.55235
7.67009 8.06418 8.17708 8.21042 8.57223 9.38673
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.024699 B = 0.002421 C = 0.002225
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1133.395117 B =11564.168193 C =12581.232566
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.115 3.885
3 N -0.734 5.734
4 C 0.564 3.436
5 O -0.549 6.549
6 C -0.187 4.187
7 C -0.043 4.043
8 C -0.156 4.156
9 C 0.056 3.944
10 C -0.227 4.227
11 C -0.033 4.033
12 C -0.217 4.217
13 C 0.126 3.874
14 C -0.449 4.449
15 H 0.090 0.910
16 C 0.033 3.967
17 N -0.745 5.745
18 Si 1.067 2.933
19 H -0.266 1.266
20 H -0.266 1.266
21 H -0.269 1.269
22 C -0.187 4.187
23 C 0.296 3.704
24 N -0.499 5.499
25 C 0.017 3.983
26 C -0.159 4.159
27 C -0.071 4.071
28 H 0.062 0.938
29 H 0.062 0.938
30 H 0.073 0.927
31 H 0.066 0.934
32 H 0.066 0.934
33 H 0.399 0.601
34 H 0.128 0.872
35 H 0.128 0.872
36 H 0.103 0.897
37 H 0.116 0.884
38 H 0.309 0.691
39 H 0.107 0.893
40 H 0.125 0.875
41 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.613 -12.252 -1.638 14.019
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.009 4.009
3 N -0.388 5.388
4 C 0.354 3.646
5 O -0.428 6.428
6 C -0.190 4.190
7 C -0.062 4.062
8 C -0.174 4.174
9 C 0.055 3.945
10 C -0.228 4.228
11 C -0.051 4.051
12 C -0.236 4.236
13 C 0.120 3.880
14 C -0.474 4.474
15 H 0.108 0.892
16 C -0.195 4.195
17 N -0.365 5.365
18 Si 0.888 3.112
19 H -0.190 1.190
20 H -0.191 1.191
21 H -0.194 1.194
22 C -0.193 4.193
23 C -0.014 4.014
24 N -0.178 5.178
25 C -0.004 4.004
26 C -0.177 4.177
27 C -0.089 4.089
28 H 0.081 0.919
29 H 0.081 0.919
30 H 0.092 0.908
31 H 0.084 0.916
32 H 0.084 0.916
33 H 0.235 0.765
34 H 0.146 0.854
35 H 0.146 0.854
36 H 0.121 0.879
37 H 0.134 0.866
38 H 0.124 0.876
39 H 0.125 0.875
40 H 0.143 0.857
41 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -5.730 -10.862 -1.414 12.362
hybrid contribution -1.602 -0.859 -0.107 1.821
sum -7.332 -11.722 -1.520 13.909
Atomic orbital electron populations
1.22012 0.94529 1.03169 1.02596 1.21265 0.94097 0.83168 1.02341
1.45976 1.07287 1.08761 1.76732 1.18405 0.81812 0.89110 0.75257
1.90736 1.55435 1.46124 1.50467 1.19596 0.94644 0.91662 1.13113
1.21048 0.94006 0.96856 0.94270 1.21169 0.99951 0.91485 1.04822
1.19112 0.92390 0.92928 0.90058 1.17731 0.92960 0.89836 1.22288
1.20499 0.93728 0.96270 0.94651 1.20790 0.98914 0.91781 1.12080
1.18531 0.88847 0.93170 0.87412 1.21050 1.01650 0.95010 1.29684
0.89225 1.27512 0.95557 1.03156 0.93244 1.70396 1.40206 1.11592
1.14300 0.83581 0.76624 0.73277 0.77748 1.19045 1.19133 1.19412
1.16678 0.89858 0.87450 1.25265 1.25695 0.91844 0.92473 0.91410
1.81055 1.11638 1.10435 1.14676 1.20707 0.97454 0.90594 0.91651
1.21096 0.95319 0.96150 1.05096 1.21011 0.98085 0.92458 0.97383
0.91936 0.91933 0.90825 0.91583 0.91583 0.76509 0.85447 0.85425
0.87872 0.86603 0.87611 0.87537 0.85706 0.86664
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.92 10.03 37.15 0.37 -0.54 16
2 C 0.11 1.00 6.39 -4.04 -0.03 0.97 16
3 N -0.73 -7.55 5.51 -61.29 -0.34 -7.89 16
4 C 0.56 7.96 7.77 -12.39 -0.10 7.87 16
5 O -0.55 -9.51 16.33 5.30 0.09 -9.43 16
6 C -0.19 -2.64 5.88 -104.89 -0.62 -3.26 16
7 C -0.04 -0.64 9.58 -39.25 -0.38 -1.01 16
8 C -0.16 -2.37 9.40 -39.26 -0.37 -2.74 16
9 C 0.06 0.90 5.88 -104.82 -0.62 0.28 16
10 C -0.23 -4.13 5.88 -104.82 -0.62 -4.75 16
11 C -0.03 -0.61 9.30 -39.71 -0.37 -0.97 16
12 C -0.22 -4.47 7.88 -39.32 -0.31 -4.78 16
13 C 0.13 2.80 5.46 -104.61 -0.57 2.23 16
14 C -0.45 -10.13 8.49 -37.96 -0.32 -10.45 16
15 H 0.09 2.06 7.44 -52.49 -0.39 1.67 16
16 C 0.03 0.71 4.95 -17.28 -0.09 0.62 16
17 N -0.75 -16.43 12.31 55.57 0.68 -15.75 16
18 Si 1.07 18.27 30.01 -169.99 -5.10 13.17 16
19 H -0.27 -4.52 7.11 56.52 0.40 -4.11 16
20 H -0.27 -4.40 7.11 56.52 0.40 -3.99 16
21 H -0.27 -4.52 7.11 56.52 0.40 -4.11 16
22 C -0.19 -3.97 5.93 -104.27 -0.62 -4.59 16
23 C 0.30 6.51 14.30 -22.47 -0.32 6.19 16
24 N -0.50 -11.38 18.54 41.84 0.78 -10.60 16
25 C 0.02 0.32 9.12 -38.84 -0.35 -0.04 16
26 C -0.16 -2.27 9.40 -39.26 -0.37 -2.63 16
27 C -0.07 -0.89 9.52 -39.24 -0.37 -1.26 16
28 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16
29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.40 3.14 6.49 -40.82 -0.26 2.88 16
34 H 0.13 1.83 7.64 -52.49 -0.40 1.42 16
35 H 0.13 1.79 6.11 -52.48 -0.32 1.47 16
36 H 0.10 1.68 6.07 -52.49 -0.32 1.36 16
37 H 0.12 2.42 6.50 -52.48 -0.34 2.08 16
38 H 0.31 6.91 6.68 -40.82 -0.27 6.64 16
39 H 0.11 1.75 6.12 -52.49 -0.32 1.43 16
40 H 0.13 1.63 6.13 -52.49 -0.32 1.31 16
41 H 0.12 1.05 6.38 -52.49 -0.34 0.72 16
LS Contribution 355.43 15.07 5.36 5.36
Total: -1.00 -26.40 355.43 -8.77 -35.17
By element:
Atomic # 1 Polarization: 13.03 SS G_CDS: -4.20 Total: 8.84 kcal
Atomic # 6 Polarization: -12.83 SS G_CDS: -6.04 Total: -18.87 kcal
Atomic # 7 Polarization: -35.36 SS G_CDS: 1.12 Total: -34.23 kcal
Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.43 kcal
Atomic # 14 Polarization: 18.27 SS G_CDS: -5.10 Total: 13.17 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -26.40 -8.77 -35.17 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241617094.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.558 kcal
(2) G-P(sol) polarization free energy of solvation -26.399 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.159 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.170 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.388 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds