Wall clock time and date at job start Tue Mar 31 2020 12:36:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 N 1.46503 * 109.47117 * 2 1
4 4 C 1.34776 * 120.00200 * 179.97438 * 3 2 1
5 5 O 1.21576 * 119.99799 * 0.02562 * 4 3 2
6 6 C 1.47724 * 120.00429 * 179.97438 * 4 3 2
7 7 C 1.39754 * 120.00812 * 180.02562 * 6 4 3
8 8 C 1.37599 * 119.99795 * 179.97438 * 7 6 4
9 9 C 1.39724 * 120.00269 * 359.97438 * 8 7 6
10 10 C 1.47933 * 119.99782 * 180.02562 * 9 8 7
11 11 C 1.40021 * 119.49901 * 359.97438 * 10 9 8
12 12 C 1.36006 * 121.18154 * 179.75421 * 11 10 9
13 13 C 1.41046 * 120.11271 * 0.52732 * 12 11 10
14 14 C 1.40435 * 120.48497 * 179.75964 * 13 12 11
15 15 H 1.08002 * 120.00206 * 154.42575 * 14 13 12
16 16 C 1.40363 * 119.99791 * 334.42791 * 14 13 12
17 17 N 1.30591 * 120.00547 * 334.69182 * 16 14 13
18 18 Si 1.86804 * 119.99906 * 154.69364 * 16 14 13
19 19 H 1.48497 * 109.47116 * 179.97438 * 18 16 14
20 20 H 1.48498 * 109.46974 * 299.99914 * 18 16 14
21 21 H 1.48498 * 109.47267 * 59.99901 * 18 16 14
22 22 C 1.46652 * 119.03006 * 359.48336 * 13 12 11
23 23 C 1.43192 * 120.56119 * 180.22666 * 22 13 12
24 24 N 9.72929 * 114.72989 * 179.97438 * 4 1 2
25 25 C 1.39061 * 118.87264 * 0.25606 * 22 13 12
26 26 C 1.39727 * 120.00900 * 0.27375 * 9 8 7
27 27 C 1.37605 * 120.00279 * 359.45113 * 26 9 8
28 28 H 1.09011 * 109.47480 * 299.99807 * 1 2 3
29 29 H 1.08997 * 109.47325 * 60.00074 * 1 2 3
30 30 H 1.09003 * 109.47120 * 180.02562 * 1 2 3
31 31 H 1.08996 * 109.47504 * 240.00221 * 2 1 3
32 32 H 1.09006 * 109.47247 * 119.99689 * 2 1 3
33 33 H 0.97001 * 120.00174 * 0.02562 * 3 2 1
34 34 H 1.07997 * 119.99948 * 359.96120 * 7 6 4
35 35 H 1.08004 * 119.99609 * 180.02562 * 8 7 6
36 36 H 1.07995 * 119.40417 * 0.02562 * 11 10 9
37 37 H 1.08007 * 119.94049 * 180.28807 * 12 11 10
38 38 H 0.97009 * 119.99434 * 354.20411 * 17 16 14
39 39 H 1.07998 * 120.10033 * 180.02562 * 25 22 13
40 40 H 1.07995 * 119.99886 * 179.70496 * 26 9 8
41 41 H 1.07991 * 120.00529 * 180.27411 * 27 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 3.3433 1.6276 0.0005
5 8 4.1333 0.7035 0.0005
6 6 3.8358 3.0203 -0.0001
7 6 5.2098 3.2758 -0.0001
8 6 5.6682 4.5732 -0.0011
9 6 4.7602 5.6351 -0.0027
10 6 5.2532 7.0298 -0.0045
11 6 6.6320 7.2737 -0.0039
12 6 7.1228 8.5421 -0.0104
13 6 6.2402 9.6424 -0.0067
14 6 6.7385 10.9554 -0.0083
15 1 6.1397 11.7597 -0.4095
16 6 8.0147 11.2223 0.5115
17 7 8.5329 10.4290 1.4101
18 14 8.9720 12.7125 -0.0821
19 1 10.2810 12.7704 0.6166
20 1 9.1960 12.6058 -1.5462
21 1 8.1996 13.9463 0.2118
22 6 4.7947 9.3952 -0.0073
23 6 3.8692 10.4878 -0.0085
24 7 3.1349 11.3546 -0.0003
25 6 4.3381 8.0817 -0.0061
26 6 3.3864 5.3799 0.0025
27 6 2.9276 4.0826 -0.0022
28 1 -0.3634 0.5138 0.8901
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8901
33 1 1.3879 2.1185 0.0004
34 1 5.9116 2.4550 0.0010
35 1 6.7301 4.7706 -0.0015
36 1 7.3180 6.4396 -0.0026
37 1 8.1901 8.7072 -0.0146
38 1 8.0044 9.7045 1.7801
39 1 3.2777 7.8768 -0.0069
40 1 2.6847 6.2008 0.0061
41 1 1.8658 3.8853 -0.0026
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001241617094.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:36:19
Heat of formation + Delta-G solvation = 0.530499 kcal
Electronic energy + Delta-G solvation = -24240.259787 eV
Core-core repulsion = 20662.101507 eV
Total energy + Delta-G solvation = -3578.158280 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.127 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.20254 -40.15446 -38.89597 -37.10705 -36.34626 -36.19614 -33.33518 -32.40528
-31.81035 -31.13794 -30.13276 -27.44784 -25.01136 -24.73725 -23.54139 -23.04026
-22.19267 -21.36998 -20.27290 -19.06095 -18.73186 -17.28863 -16.91537 -16.51634
-16.50495 -16.28199 -15.80311 -15.57518 -15.13622 -14.95370 -14.83621 -14.78688
-14.62752 -14.27443 -14.06602 -13.76924 -13.72889 -13.50767 -13.29661 -13.16434
-12.97277 -12.69625 -12.60264 -12.39198 -12.35900 -12.15042 -11.99964 -11.59389
-11.43467 -11.12758 -11.02329 -10.42865 -10.10714 -9.91268 -9.77070 -9.45663
-8.97517 -6.66545 -0.32265 0.33290 0.52892 0.89215 1.49296 1.56025
1.78249 1.91206 1.93898 2.20668 2.20964 2.31446 2.56210 3.02696
3.43361 3.52010 3.74932 3.85665 4.02226 4.08571 4.17522 4.19452
4.23178 4.34997 4.51785 4.52929 4.53315 4.85063 4.88335 4.93335
4.95316 5.06350 5.07488 5.22457 5.26612 5.30509 5.37110 5.44219
5.47402 5.49251 5.61677 5.68400 5.87709 6.00850 6.05011 6.10918
6.44561 6.52617 6.57542 6.85633 7.19750 7.74612
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.024699 B = 0.002421 C = 0.002225
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1133.395117 B =11564.168193 C =12581.232566
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.110 3.890
3 N -0.717 5.717
4 C 0.560 3.440
5 O -0.587 6.587
6 C -0.183 4.183
7 C -0.056 4.056
8 C -0.153 4.153
9 C 0.030 3.970
10 C -0.211 4.211
11 C -0.031 4.031
12 C -0.229 4.229
13 C 0.113 3.887
14 C -0.490 4.490
15 H 0.074 0.926
16 C 0.010 3.990
17 N -0.766 5.766
18 Si 1.109 2.891
19 H -0.262 1.262
20 H -0.257 1.257
21 H -0.265 1.265
22 C -0.207 4.207
23 C 0.302 3.698
24 N -0.521 5.521
25 C 0.016 3.984
26 C -0.154 4.154
27 C -0.060 4.060
28 H 0.070 0.930
29 H 0.070 0.930
30 H 0.086 0.914
31 H 0.058 0.942
32 H 0.058 0.942
33 H 0.414 0.586
34 H 0.127 0.873
35 H 0.135 0.865
36 H 0.127 0.873
37 H 0.108 0.892
38 H 0.298 0.702
39 H 0.134 0.866
40 H 0.142 0.858
41 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.627 -14.279 -1.974 16.799
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.014 4.014
3 N -0.370 5.370
4 C 0.349 3.651
5 O -0.469 6.469
6 C -0.186 4.186
7 C -0.075 4.075
8 C -0.171 4.171
9 C 0.029 3.971
10 C -0.212 4.212
11 C -0.050 4.050
12 C -0.248 4.248
13 C 0.107 3.893
14 C -0.515 4.515
15 H 0.092 0.908
16 C -0.213 4.213
17 N -0.386 5.386
18 Si 0.925 3.075
19 H -0.186 1.186
20 H -0.181 1.181
21 H -0.190 1.190
22 C -0.213 4.213
23 C -0.007 4.007
24 N -0.201 5.201
25 C -0.005 4.005
26 C -0.171 4.171
27 C -0.079 4.079
28 H 0.089 0.911
29 H 0.089 0.911
30 H 0.105 0.895
31 H 0.076 0.924
32 H 0.076 0.924
33 H 0.252 0.748
34 H 0.145 0.855
35 H 0.153 0.847
36 H 0.145 0.855
37 H 0.126 0.874
38 H 0.111 0.889
39 H 0.151 0.849
40 H 0.159 0.841
41 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -7.802 -12.899 -1.751 15.177
hybrid contribution -1.185 -0.670 -0.016 1.361
sum -8.987 -13.569 -1.767 16.371
Atomic orbital electron populations
1.21971 0.91675 1.04362 1.03383 1.21426 0.96358 0.81968 1.01599
1.45924 1.06212 1.10165 1.74657 1.18480 0.82812 0.88606 0.75199
1.90725 1.56693 1.47046 1.52466 1.19838 0.94742 0.92378 1.11623
1.21147 0.94767 0.96713 0.94895 1.21260 1.00368 0.91425 1.04001
1.19110 0.93701 0.91733 0.92516 1.18010 0.92650 0.91044 1.19528
1.20800 0.94701 0.96203 0.93248 1.20762 0.98442 0.92332 1.13221
1.18801 0.89652 0.93616 0.87238 1.21034 1.02864 0.94977 1.32656
0.90832 1.28545 0.95857 1.04537 0.92371 1.70482 1.40189 1.12391
1.15531 0.83073 0.75681 0.70821 0.77880 1.18592 1.18080 1.18989
1.16872 0.89444 0.88310 1.26696 1.25889 0.91555 0.92369 0.90872
1.81032 1.12487 1.10756 1.15781 1.20955 0.99010 0.89542 0.90988
1.21347 0.94659 0.97457 1.03686 1.21345 0.99938 0.91084 0.95488
0.91118 0.91087 0.89524 0.92375 0.92409 0.74817 0.85471 0.84734
0.85511 0.87433 0.88852 0.84884 0.84084 0.82567
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.17 10.03 71.98 0.72 -0.45 16
2 C 0.11 1.62 6.39 86.38 0.55 2.18 16
3 N -0.72 -12.38 5.51 -466.09 -2.57 -14.94 16
4 C 0.56 14.42 7.77 86.75 0.67 15.09 16
5 O -0.59 -19.66 16.33 -3.96 -0.06 -19.72 16
6 C -0.18 -4.62 5.88 -20.03 -0.12 -4.74 16
7 C -0.06 -1.56 9.58 22.49 0.22 -1.34 16
8 C -0.15 -4.31 9.40 22.48 0.21 -4.10 16
9 C 0.03 0.89 5.88 -19.99 -0.12 0.77 16
10 C -0.21 -7.34 5.88 -19.99 -0.12 -7.45 16
11 C -0.03 -1.12 9.30 22.18 0.21 -0.92 16
12 C -0.23 -9.62 7.88 22.44 0.18 -9.45 16
13 C 0.11 5.15 5.46 -19.86 -0.11 5.04 16
14 C -0.49 -23.14 8.49 23.32 0.20 -22.94 16
15 H 0.07 3.59 7.44 -2.91 -0.02 3.57 16
16 C 0.01 0.44 4.95 85.39 0.42 0.86 16
17 N -0.77 -35.05 12.31 21.90 0.27 -34.78 16
18 Si 1.11 37.70 30.01 68.60 2.06 39.76 16
19 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16
20 H -0.26 -8.21 7.11 99.48 0.71 -7.51 16
21 H -0.27 -8.73 7.11 99.48 0.71 -8.03 16
22 C -0.21 -8.88 5.93 -19.64 -0.12 -9.00 16
23 C 0.30 13.49 14.30 88.33 1.26 14.75 16
24 N -0.52 -24.01 18.54 19.00 0.35 -23.66 16
25 C 0.02 0.56 9.12 22.75 0.21 0.77 16
26 C -0.15 -3.79 9.40 22.48 0.21 -3.58 16
27 C -0.06 -1.25 9.52 22.49 0.21 -1.04 16
28 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16
29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16
30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16
31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
32 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16
33 H 0.41 4.62 6.49 -92.71 -0.60 4.02 16
34 H 0.13 3.51 7.64 -2.91 -0.02 3.48 16
35 H 0.13 3.52 6.11 -2.91 -0.02 3.50 16
36 H 0.13 3.95 6.07 -2.91 -0.02 3.93 16
37 H 0.11 4.66 6.50 -2.91 -0.02 4.64 16
38 H 0.30 13.96 6.68 -92.70 -0.62 13.34 16
39 H 0.13 4.01 6.12 -2.91 -0.02 4.00 16
40 H 0.14 3.04 6.13 -2.91 -0.02 3.02 16
41 H 0.16 1.93 6.38 -2.92 -0.02 1.91 16
Total: -1.00 -59.09 355.43 5.40 -53.69
By element:
Atomic # 1 Polarization: 24.53 SS G_CDS: 0.65 Total: 25.18 kcal
Atomic # 6 Polarization: -30.23 SS G_CDS: 4.70 Total: -25.53 kcal
Atomic # 7 Polarization: -71.44 SS G_CDS: -1.94 Total: -73.38 kcal
Atomic # 8 Polarization: -19.66 SS G_CDS: -0.06 Total: -19.72 kcal
Atomic # 14 Polarization: 37.70 SS G_CDS: 2.06 Total: 39.76 kcal
Total: -59.09 5.40 -53.69 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241617094.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.225 kcal
(2) G-P(sol) polarization free energy of solvation -59.090 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.865 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.694 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.530 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds