Wall clock time and date at job start Tue Mar 31 2020 13:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35683 * 116.99845 * 2 1 4 4 C 1.37938 * 120.19473 * 0.23688 * 3 2 1 5 5 C 1.39636 * 119.93276 * 180.31327 * 4 3 2 6 6 C 1.48026 * 119.83656 * 179.70536 * 5 4 3 7 7 C 1.41130 * 126.35556 * 359.69843 * 6 5 4 8 8 N 1.30584 * 108.16113 * 180.02562 * 7 6 5 9 9 N 1.39965 * 108.85513 * 0.02562 * 8 7 6 10 10 C 1.40124 * 125.83470 * 180.02562 * 9 8 7 11 11 C 1.38860 * 120.06814 * 179.74696 * 10 9 8 12 12 C 1.38118 * 119.93215 * 180.27266 * 11 10 9 13 13 C 1.38280 * 120.06724 * 359.97438 * 12 11 10 14 14 C 1.38290 * 120.14029 * 0.02562 * 13 12 11 15 15 C 1.38113 * 120.06543 * 0.02562 * 14 13 12 16 16 C 1.34978 * 108.32844 * 0.26203 * 9 8 7 17 17 C 1.40089 * 120.32439 * 359.42520 * 5 4 3 18 18 C 1.36106 * 120.39108 * 0.29983 * 17 5 4 19 19 C 1.40923 * 120.05178 * 359.97438 * 18 17 5 20 20 C 1.40844 * 120.15382 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99507 * 204.93848 * 20 19 18 22 22 C 1.39924 * 120.00608 * 24.93577 * 20 19 18 23 23 N 1.30893 * 119.99498 * 17.83597 * 22 20 19 24 24 Si 1.86796 * 120.00274 * 197.83357 * 22 20 19 25 25 H 1.48497 * 109.47308 * 90.00345 * 24 22 20 26 26 H 1.48502 * 109.47218 * 210.00094 * 24 22 20 27 27 H 1.48500 * 109.47211 * 329.99901 * 24 22 20 28 28 H 1.08995 * 109.47073 * 299.99619 * 1 2 3 29 29 H 1.08998 * 109.47504 * 59.99351 * 1 2 3 30 30 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.02848 * 0.02562 * 4 3 2 32 32 H 1.08000 * 125.92185 * 359.97438 * 7 6 5 33 33 H 1.07993 * 120.03358 * 0.24557 * 11 10 9 34 34 H 1.07994 * 119.96747 * 180.02562 * 12 11 10 35 35 H 1.08000 * 119.93115 * 180.02562 * 13 12 11 36 36 H 1.07991 * 119.96890 * 180.02562 * 14 13 12 37 37 H 1.08002 * 120.03473 * 180.02562 * 15 14 13 38 38 H 1.07999 * 126.31809 * 179.72215 * 16 9 8 39 39 H 1.08002 * 119.81116 * 180.27296 * 17 5 4 40 40 H 1.07998 * 119.97951 * 179.97438 * 18 17 5 41 41 H 0.97001 * 119.99406 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.2976 2.3683 0.0049 5 6 1.9371 3.6096 -0.0017 6 6 1.1330 4.8524 -0.0030 7 6 -0.2757 4.9374 -0.0041 8 7 -0.6073 6.2004 -0.0056 9 7 0.5589 6.9742 -0.0062 10 6 0.6144 8.3744 -0.0073 11 6 1.8428 9.0220 -0.0024 12 6 1.8942 10.4022 0.0022 13 6 0.7241 11.1391 0.0015 14 6 -0.5008 10.4971 -0.0033 15 6 -0.5588 9.1172 -0.0069 16 6 1.6210 6.1413 -0.0108 17 6 3.3360 3.6845 -0.0012 18 6 4.0864 2.5490 -0.0005 19 6 3.4578 1.2877 0.0004 20 6 4.2322 0.1113 0.0018 21 1 3.8207 -0.8064 -0.3919 22 6 5.5345 0.1314 0.5131 23 7 5.9160 1.1104 1.2937 24 14 6.7285 -1.2389 0.0819 25 1 7.4730 -0.8770 -1.1509 26 1 7.6865 -1.4309 1.2003 27 1 5.9753 -2.4982 -0.1463 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2189 2.3160 0.0092 32 1 -0.9609 4.1025 -0.0045 33 1 2.7569 8.4470 -0.0019 34 1 2.8492 10.9064 0.0055 35 1 0.7668 12.2182 0.0047 36 1 -1.4129 11.0753 -0.0043 37 1 -1.5156 8.6164 -0.0110 38 1 2.6613 6.4312 -0.0166 39 1 3.8221 4.6490 -0.0019 40 1 5.1644 2.6145 -0.0005 41 1 6.8189 1.1245 1.6479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241751976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:29 Heat of formation + Delta-G solvation = 88.433934 kcal Electronic energy + Delta-G solvation = -24825.624407 eV Core-core repulsion = 21251.277906 eV Total energy + Delta-G solvation = -3574.346501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.16684 -39.02611 -38.55923 -36.14963 -34.09585 -33.22113 -31.36193 -30.75686 -29.53296 -28.80923 -28.24103 -26.54728 -25.01866 -23.30654 -22.98329 -21.39120 -21.11815 -19.87915 -19.46790 -18.00704 -17.49141 -16.43151 -16.02394 -15.34214 -15.28466 -15.01990 -14.74174 -14.64780 -14.52466 -14.14290 -13.72749 -13.65372 -13.15529 -12.82519 -12.78597 -12.72070 -12.28708 -11.81902 -11.77472 -11.44614 -11.33205 -11.26539 -11.11061 -10.82967 -10.62145 -10.42834 -10.36856 -9.96428 -9.77054 -9.56642 -9.30238 -9.18777 -8.75064 -8.12448 -7.24472 -6.96708 -6.73538 -4.25001 0.82050 1.16798 2.16142 2.49895 2.58580 2.97451 3.02110 3.06060 3.09721 3.60270 3.71024 3.89500 4.47239 4.52887 4.63385 4.71297 4.90215 4.94230 5.12958 5.20257 5.37150 5.50028 5.57664 5.75171 5.75472 5.83013 5.85671 5.94417 5.96517 6.09829 6.14914 6.20869 6.27698 6.31628 6.37177 6.62501 6.76120 6.99715 7.03536 7.23188 7.29890 7.38268 7.67373 7.69261 7.90049 8.04023 8.12920 8.36162 8.61950 8.75084 9.01404 10.08959 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.002825 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.863875 B = 9908.825017 C =11313.571568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.010 3.990 4 C -0.155 4.155 5 C -0.128 4.128 6 C -0.114 4.114 7 C 0.059 3.941 8 N -0.301 5.301 9 N -0.328 5.328 10 C 0.179 3.821 11 C -0.149 4.149 12 C -0.091 4.091 13 C -0.143 4.143 14 C -0.096 4.096 15 C -0.130 4.130 16 C 0.011 3.989 17 C -0.102 4.102 18 C -0.151 4.151 19 C 0.104 3.896 20 C -0.433 4.433 21 H 0.085 0.915 22 C 0.071 3.929 23 N -0.786 5.786 24 Si 0.911 3.089 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.261 1.261 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.184 0.816 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.174 0.826 39 H 0.088 0.912 40 H 0.125 0.875 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 12.543 -1.815 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.227 6.227 3 C -0.034 4.034 4 C -0.175 4.175 5 C -0.131 4.131 6 C -0.124 4.124 7 C -0.128 4.128 8 N -0.119 5.119 9 N -0.104 5.104 10 C 0.085 3.915 11 C -0.170 4.170 12 C -0.109 4.109 13 C -0.162 4.162 14 C -0.114 4.114 15 C -0.151 4.151 16 C -0.129 4.129 17 C -0.121 4.121 18 C -0.170 4.170 19 C 0.100 3.900 20 C -0.462 4.462 21 H 0.103 0.897 22 C -0.147 4.147 23 N -0.411 5.411 24 Si 0.736 3.264 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.184 1.184 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.201 0.799 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.191 0.809 39 H 0.106 0.894 40 H 0.142 0.858 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.228 13.273 -1.657 15.204 hybrid contribution 0.997 -1.010 -0.023 1.419 sum -6.230 12.263 -1.680 13.857 Atomic orbital electron populations 1.22737 0.81726 1.01779 0.99957 1.85973 1.18225 1.28106 1.90388 1.19033 0.92268 0.82624 1.09466 1.20501 0.97178 0.91850 1.07932 1.17088 0.91653 0.88601 1.15777 1.19436 0.92082 0.92594 1.08270 1.24084 0.95668 0.93962 0.99115 1.77034 1.06249 1.03453 1.25193 1.45386 1.04791 1.03330 1.56869 1.17606 0.94949 0.79055 0.99871 1.20883 0.96001 0.95214 1.04874 1.20949 0.98785 0.92690 0.98519 1.21151 0.92435 1.00057 1.02579 1.21027 0.98172 0.93507 0.98712 1.20894 0.97532 0.93834 1.02799 1.22678 0.93353 0.89610 1.07248 1.20322 0.92246 0.97159 1.02361 1.20733 0.99632 0.90490 1.06194 1.17123 0.87396 0.94070 0.91374 1.19514 0.96540 0.96869 1.33233 0.89661 1.25975 0.98958 0.97052 0.92722 1.69855 1.19274 1.30536 1.21435 0.86246 0.79683 0.81487 0.79017 1.19190 1.20278 1.18434 0.94104 0.94186 0.90045 0.88400 0.79884 0.85147 0.85235 0.85771 0.85432 0.84673 0.80900 0.89361 0.85759 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.04 9.77 -18.75 -0.18 -7.23 16 3 C 0.01 0.25 6.71 -38.45 -0.26 -0.01 16 4 C -0.16 -3.37 8.55 -39.17 -0.34 -3.71 16 5 C -0.13 -2.77 5.89 -104.67 -0.62 -3.39 16 6 C -0.11 -2.17 6.08 -104.94 -0.64 -2.81 16 7 C 0.06 1.02 11.41 -16.99 -0.19 0.83 16 8 N -0.30 -5.25 11.79 30.85 0.36 -4.89 16 9 N -0.33 -5.47 3.78 -10.17 -0.04 -5.50 16 10 C 0.18 2.55 6.68 -83.61 -0.56 1.99 16 11 C -0.15 -1.78 9.45 -39.40 -0.37 -2.15 16 12 C -0.09 -0.87 10.04 -39.61 -0.40 -1.27 16 13 C -0.14 -1.29 10.04 -39.55 -0.40 -1.69 16 14 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 15 C -0.13 -1.65 9.66 -39.40 -0.38 -2.03 16 16 C 0.01 0.18 10.23 -16.32 -0.17 0.02 16 17 C -0.10 -2.28 9.49 -39.65 -0.38 -2.66 16 18 C -0.15 -3.75 8.61 -39.33 -0.34 -4.09 16 19 C 0.10 2.70 5.58 -106.65 -0.60 2.10 16 20 C -0.43 -11.30 8.70 -37.97 -0.33 -11.63 16 21 H 0.09 2.22 7.64 -52.48 -0.40 1.81 16 22 C 0.07 1.74 5.13 -17.32 -0.09 1.65 16 23 N -0.79 -19.58 10.97 55.55 0.61 -18.97 16 24 Si 0.91 18.26 29.60 -169.99 -5.03 13.23 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 26 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 27 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 28 H 0.04 0.63 7.65 -51.93 -0.40 0.24 16 29 H 0.04 0.61 7.67 -51.93 -0.40 0.21 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.84 5.26 -52.49 -0.28 1.56 16 32 H 0.18 2.67 7.33 -52.49 -0.38 2.28 16 33 H 0.13 1.42 6.72 -52.49 -0.35 1.07 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.14 1.74 7.69 -52.49 -0.40 1.33 16 38 H 0.17 2.56 6.26 -52.49 -0.33 2.23 16 39 H 0.09 1.74 7.00 -52.49 -0.37 1.37 16 40 H 0.12 3.15 6.17 -52.49 -0.32 2.83 16 41 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -29.47 349.35 -8.92 -38.40 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.46 Total: 8.31 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -5.45 Total: -28.62 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 0.93 Total: -29.36 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.18 Total: -7.23 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.47 -8.92 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241751976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.832 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds