Wall clock time and date at job start Tue Mar 31 2020 13:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35683 * 116.99845 * 2 1 4 4 C 1.37938 * 120.19473 * 0.23688 * 3 2 1 5 5 C 1.39636 * 119.93276 * 180.31327 * 4 3 2 6 6 C 1.48026 * 119.83656 * 179.70536 * 5 4 3 7 7 C 1.41130 * 126.35556 * 359.69843 * 6 5 4 8 8 N 1.30584 * 108.16113 * 180.02562 * 7 6 5 9 9 N 1.39965 * 108.85513 * 0.02562 * 8 7 6 10 10 C 1.40124 * 125.83470 * 180.02562 * 9 8 7 11 11 C 1.38860 * 120.06814 * 179.74696 * 10 9 8 12 12 C 1.38118 * 119.93215 * 180.27266 * 11 10 9 13 13 C 1.38280 * 120.06724 * 359.97438 * 12 11 10 14 14 C 1.38290 * 120.14029 * 0.02562 * 13 12 11 15 15 C 1.38113 * 120.06543 * 0.02562 * 14 13 12 16 16 C 1.34978 * 108.32844 * 0.26203 * 9 8 7 17 17 C 1.40089 * 120.32439 * 359.42520 * 5 4 3 18 18 C 1.36106 * 120.39108 * 0.29983 * 17 5 4 19 19 C 1.40923 * 120.05178 * 359.97438 * 18 17 5 20 20 C 1.40844 * 120.15382 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99507 * 204.93848 * 20 19 18 22 22 C 1.39924 * 120.00608 * 24.93577 * 20 19 18 23 23 N 1.30893 * 119.99498 * 17.83597 * 22 20 19 24 24 Si 1.86796 * 120.00274 * 197.83357 * 22 20 19 25 25 H 1.48497 * 109.47308 * 90.00345 * 24 22 20 26 26 H 1.48502 * 109.47218 * 210.00094 * 24 22 20 27 27 H 1.48500 * 109.47211 * 329.99901 * 24 22 20 28 28 H 1.08995 * 109.47073 * 299.99619 * 1 2 3 29 29 H 1.08998 * 109.47504 * 59.99351 * 1 2 3 30 30 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.02848 * 0.02562 * 4 3 2 32 32 H 1.08000 * 125.92185 * 359.97438 * 7 6 5 33 33 H 1.07993 * 120.03358 * 0.24557 * 11 10 9 34 34 H 1.07994 * 119.96747 * 180.02562 * 12 11 10 35 35 H 1.08000 * 119.93115 * 180.02562 * 13 12 11 36 36 H 1.07991 * 119.96890 * 180.02562 * 14 13 12 37 37 H 1.08002 * 120.03473 * 180.02562 * 15 14 13 38 38 H 1.07999 * 126.31809 * 179.72215 * 16 9 8 39 39 H 1.08002 * 119.81116 * 180.27296 * 17 5 4 40 40 H 1.07998 * 119.97951 * 179.97438 * 18 17 5 41 41 H 0.97001 * 119.99406 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.2976 2.3683 0.0049 5 6 1.9371 3.6096 -0.0017 6 6 1.1330 4.8524 -0.0030 7 6 -0.2757 4.9374 -0.0041 8 7 -0.6073 6.2004 -0.0056 9 7 0.5589 6.9742 -0.0062 10 6 0.6144 8.3744 -0.0073 11 6 1.8428 9.0220 -0.0024 12 6 1.8942 10.4022 0.0022 13 6 0.7241 11.1391 0.0015 14 6 -0.5008 10.4971 -0.0033 15 6 -0.5588 9.1172 -0.0069 16 6 1.6210 6.1413 -0.0108 17 6 3.3360 3.6845 -0.0012 18 6 4.0864 2.5490 -0.0005 19 6 3.4578 1.2877 0.0004 20 6 4.2322 0.1113 0.0018 21 1 3.8207 -0.8064 -0.3919 22 6 5.5345 0.1314 0.5131 23 7 5.9160 1.1104 1.2937 24 14 6.7285 -1.2389 0.0819 25 1 7.4730 -0.8770 -1.1509 26 1 7.6865 -1.4309 1.2003 27 1 5.9753 -2.4982 -0.1463 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2189 2.3160 0.0092 32 1 -0.9609 4.1025 -0.0045 33 1 2.7569 8.4470 -0.0019 34 1 2.8492 10.9064 0.0055 35 1 0.7668 12.2182 0.0047 36 1 -1.4129 11.0753 -0.0043 37 1 -1.5156 8.6164 -0.0110 38 1 2.6613 6.4312 -0.0166 39 1 3.8221 4.6490 -0.0019 40 1 5.1644 2.6145 -0.0005 41 1 6.8189 1.1245 1.6479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241751976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:28 Heat of formation + Delta-G solvation = 74.219070 kcal Electronic energy + Delta-G solvation = -24826.240810 eV Core-core repulsion = 21251.277906 eV Total energy + Delta-G solvation = -3574.962904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.44937 -40.38434 -39.81681 -37.83884 -35.75651 -34.44607 -32.61192 -31.98459 -30.86882 -30.44654 -29.59842 -28.01980 -26.62970 -24.47109 -24.04848 -22.93546 -22.53004 -21.17474 -20.92470 -19.36259 -19.14524 -17.85922 -17.14603 -16.96674 -16.47011 -16.30519 -16.16386 -16.08078 -15.84333 -15.52082 -14.91053 -14.66379 -14.52372 -14.37561 -14.20149 -13.82980 -13.81161 -13.47556 -13.04028 -12.83825 -12.71604 -12.59386 -12.53444 -12.20854 -12.09314 -11.81200 -11.76817 -11.52983 -11.28128 -11.23727 -11.03573 -10.21540 -10.01429 -9.42258 -8.93869 -8.67096 -8.43495 -6.11899 -0.21025 0.34247 0.66465 1.18219 1.22767 1.39866 1.40301 1.44602 1.53206 2.04152 2.24363 2.80414 2.86184 2.95302 3.44315 3.76666 3.77203 3.94138 3.97689 4.23443 4.30636 4.36425 4.41010 4.44245 4.50478 4.53506 4.58942 4.64542 4.71903 4.76746 4.78918 5.02998 5.11217 5.19271 5.30026 5.39131 5.46817 5.47858 5.51764 5.60554 5.79257 5.88581 5.95489 6.20442 6.23079 6.31663 6.53922 6.62850 6.81455 6.92425 7.26843 8.35287 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.002825 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.863875 B = 9908.825017 C =11313.571568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.339 6.339 3 C -0.001 4.001 4 C -0.162 4.162 5 C -0.108 4.108 6 C -0.155 4.155 7 C 0.058 3.942 8 N -0.315 5.315 9 N -0.324 5.324 10 C 0.133 3.867 11 C -0.155 4.155 12 C -0.090 4.090 13 C -0.129 4.129 14 C -0.095 4.095 15 C -0.142 4.142 16 C 0.031 3.969 17 C -0.116 4.116 18 C -0.164 4.164 19 C 0.062 3.938 20 C -0.476 4.476 21 H 0.070 0.930 22 C 0.034 3.966 23 N -0.821 5.821 24 Si 0.980 3.020 25 H -0.260 1.260 26 H -0.267 1.267 27 H -0.263 1.263 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.206 0.794 33 H 0.136 0.864 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.125 0.875 38 H 0.194 0.806 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.466 15.613 -2.005 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.255 6.255 3 C -0.045 4.045 4 C -0.181 4.181 5 C -0.110 4.110 6 C -0.165 4.165 7 C -0.128 4.128 8 N -0.134 5.134 9 N -0.099 5.099 10 C 0.041 3.959 11 C -0.175 4.175 12 C -0.109 4.109 13 C -0.147 4.147 14 C -0.114 4.114 15 C -0.162 4.162 16 C -0.111 4.111 17 C -0.135 4.135 18 C -0.184 4.184 19 C 0.059 3.941 20 C -0.505 4.505 21 H 0.088 0.912 22 C -0.181 4.181 23 N -0.447 5.447 24 Si 0.801 3.199 25 H -0.185 1.185 26 H -0.191 1.191 27 H -0.187 1.187 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.128 0.872 31 H 0.145 0.855 32 H 0.222 0.778 33 H 0.154 0.846 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.143 0.857 38 H 0.211 0.789 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.156 16.392 -1.848 18.403 hybrid contribution 1.008 -1.503 0.026 1.810 sum -7.148 14.890 -1.823 16.617 Atomic orbital electron populations 1.23086 0.78716 1.04166 1.01011 1.85921 1.21425 1.27775 1.90351 1.19229 0.92187 0.83930 1.09160 1.20796 0.98652 0.91156 1.07541 1.17395 0.91620 0.89811 1.12203 1.19333 0.92863 0.92187 1.12113 1.24383 0.95291 0.94595 0.98570 1.77014 1.06957 1.03522 1.25876 1.45630 1.04254 1.04439 1.55626 1.18048 0.96597 0.77939 1.03310 1.21139 0.95350 0.96501 1.04551 1.21375 1.00615 0.91733 0.97155 1.21645 0.91617 1.01901 0.99577 1.21393 1.00022 0.92405 0.97531 1.21016 0.96682 0.95181 1.03325 1.23042 0.94493 0.89352 1.04169 1.20561 0.92875 0.97432 1.02589 1.20702 0.99231 0.91215 1.07215 1.17489 0.88872 0.94615 0.93110 1.19549 0.98291 0.96620 1.36023 0.91184 1.26703 0.99888 0.99451 0.92027 1.69891 1.19969 1.32376 1.22511 0.85230 0.77373 0.78216 0.79068 1.18488 1.19103 1.18715 0.93127 0.92799 0.87176 0.85476 0.77779 0.84613 0.82230 0.82221 0.82652 0.85721 0.78877 0.87019 0.87213 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.81 113.37 1.11 1.92 16 2 O -0.34 -15.72 9.77 -90.01 -0.88 -16.60 16 3 C 0.00 -0.03 6.71 23.00 0.15 0.12 16 4 C -0.16 -7.08 8.55 22.54 0.19 -6.88 16 5 C -0.11 -4.64 5.89 -19.89 -0.12 -4.76 16 6 C -0.15 -5.75 6.08 -20.07 -0.12 -5.87 16 7 C 0.06 1.94 11.41 85.59 0.98 2.92 16 8 N -0.31 -10.68 11.79 -56.31 -0.66 -11.34 16 9 N -0.32 -10.43 3.78 -186.09 -0.70 -11.13 16 10 C 0.13 3.57 6.68 38.11 0.25 3.83 16 11 C -0.15 -3.31 9.45 22.39 0.21 -3.10 16 12 C -0.09 -1.38 10.04 22.25 0.22 -1.15 16 13 C -0.13 -1.72 10.04 22.29 0.22 -1.49 16 14 C -0.10 -1.54 10.04 22.25 0.22 -1.32 16 15 C -0.14 -3.33 9.66 22.39 0.22 -3.12 16 16 C 0.03 1.04 10.23 84.11 0.86 1.90 16 17 C -0.12 -5.28 9.49 22.22 0.21 -5.07 16 18 C -0.16 -8.54 8.61 22.43 0.19 -8.35 16 19 C 0.06 3.40 5.58 -21.18 -0.12 3.28 16 20 C -0.48 -26.42 8.70 23.32 0.20 -26.21 16 21 H 0.07 3.91 7.64 -2.91 -0.02 3.89 16 22 C 0.03 1.74 5.13 85.24 0.44 2.17 16 23 N -0.82 -42.87 10.97 21.83 0.24 -42.63 16 24 Si 0.98 38.94 29.60 68.60 2.03 40.97 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 26 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 27 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 28 H 0.05 1.52 7.65 -2.39 -0.02 1.50 16 29 H 0.05 1.57 7.67 -2.39 -0.02 1.55 16 30 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 31 H 0.13 4.63 5.26 -2.91 -0.02 4.62 16 32 H 0.21 5.61 7.33 -2.91 -0.02 5.59 16 33 H 0.14 2.65 6.72 -2.91 -0.02 2.63 16 34 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.16 1.60 8.06 -2.92 -0.02 1.57 16 37 H 0.12 3.11 7.69 -2.91 -0.02 3.08 16 38 H 0.19 5.38 6.26 -2.91 -0.02 5.36 16 39 H 0.11 4.39 7.00 -2.91 -0.02 4.37 16 40 H 0.11 5.92 6.17 -2.91 -0.02 5.90 16 41 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 Total: -1.00 -68.39 349.35 6.43 -61.96 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 1.07 Total: 29.96 kcal Atomic # 6 Polarization: -56.51 SS G_CDS: 5.34 Total: -51.18 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: -1.13 Total: -65.11 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.88 Total: -16.60 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -68.39 6.43 -61.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241751976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.178 kcal (2) G-P(sol) polarization free energy of solvation -68.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds