Wall clock time and date at job start Tue Mar 31 2020 13:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35646 * 116.99762 * 2 1 4 4 C 1.39121 * 119.87888 * 359.97438 * 3 2 1 5 5 C 1.36438 * 120.43116 * 180.02562 * 4 3 2 6 6 C 1.40905 * 120.17184 * 359.97438 * 5 4 3 7 7 C 1.41239 * 120.12129 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99537 * 24.50104 * 7 6 5 9 9 C 1.39854 * 119.99816 * 204.50225 * 7 6 5 10 10 N 1.30895 * 120.00212 * 17.82165 * 9 7 6 11 11 Si 1.86806 * 119.99696 * 197.82491 * 9 7 6 12 12 H 1.48492 * 109.47190 * 90.00035 * 11 9 7 13 13 H 1.48503 * 109.46757 * 210.00015 * 11 9 7 14 14 H 1.48499 * 109.46872 * 329.99853 * 11 9 7 15 15 C 1.40642 * 119.75949 * 359.76992 * 6 5 4 16 16 C 1.38518 * 119.57244 * 0.49896 * 15 6 5 17 17 C 1.48439 * 120.08799 * 179.75211 * 16 15 6 18 18 C 1.40908 * 126.21958 * 129.75501 * 17 16 15 19 19 N 1.30704 * 108.14741 * 179.73578 * 18 17 16 20 20 N 1.40014 * 108.54535 * 0.25600 * 19 18 17 21 21 C 1.40150 * 125.91235 * 179.97438 * 20 19 18 22 22 C 1.38850 * 120.06549 * 179.75387 * 21 20 19 23 23 C 1.38117 * 119.92905 * 179.69659 * 22 21 20 24 24 C 1.38283 * 120.06414 * 0.58016 * 23 22 21 25 25 C 1.38281 * 120.14060 * 359.71463 * 24 23 22 26 26 C 1.38119 * 120.06402 * 359.97438 * 25 24 23 27 27 C 1.35136 * 108.17514 * 0.02562 * 20 19 18 28 28 H 1.09003 * 109.47235 * 60.00432 * 1 2 3 29 29 H 1.09006 * 109.46756 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47401 * 299.99954 * 1 2 3 31 31 H 1.07993 * 119.78166 * 0.04523 * 4 3 2 32 32 H 1.07996 * 119.91225 * 180.02562 * 5 4 3 33 33 H 0.97001 * 119.99813 * 180.02562 * 10 9 7 34 34 H 1.07996 * 120.21759 * 180.25505 * 15 6 5 35 35 H 1.08005 * 125.92235 * 359.97438 * 18 17 16 36 36 H 1.08000 * 120.03439 * 359.97438 * 22 21 20 37 37 H 1.07990 * 119.96715 * 180.29609 * 23 22 21 38 38 H 1.08005 * 119.92770 * 179.74582 * 24 23 22 39 39 H 1.07994 * 119.96652 * 180.02562 * 25 24 23 40 40 H 1.08002 * 120.03161 * 180.02562 * 26 25 24 41 41 H 1.08000 * 126.21852 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2845 2.3738 -0.0005 5 6 1.8921 3.5954 -0.0011 6 6 3.2982 3.6870 -0.0005 7 6 3.9261 4.9521 -0.0005 8 1 3.4036 5.8142 0.3870 9 6 5.2244 5.0884 -0.5024 10 7 5.7276 4.1606 -1.2765 11 14 6.2403 6.5946 -0.0677 12 1 7.0139 6.3290 1.1717 13 1 7.1763 6.8980 -1.1800 14 1 5.3384 7.7539 0.1505 15 6 4.0742 2.5140 0.0055 16 6 3.4466 1.2791 0.0003 17 6 4.2545 0.0338 0.0010 18 6 4.0941 -1.0622 0.8719 19 7 4.9855 -1.9652 0.5583 20 7 5.7487 -1.4845 -0.5126 21 6 6.8060 -2.1600 -1.1371 22 6 7.4797 -1.5686 -2.1974 23 6 8.5253 -2.2342 -2.8067 24 6 8.8937 -3.4933 -2.3695 25 6 8.2207 -4.0875 -1.3177 26 6 7.1784 -3.4242 -0.7002 27 6 5.2900 -0.2560 -0.8391 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2064 2.3108 -0.0002 32 1 1.2938 4.4945 -0.0011 33 1 6.6282 4.2550 -1.6243 34 1 5.1524 2.5756 0.0101 35 1 3.3594 -1.1436 1.6593 36 1 7.1892 -0.5872 -2.5424 37 1 9.0528 -1.7727 -3.6283 38 1 9.7090 -4.0135 -2.8502 39 1 8.5110 -5.0707 -0.9782 40 1 6.6534 -3.8886 0.1215 41 1 5.6707 0.3791 -1.6254 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241752916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:12 Heat of formation + Delta-G solvation = 90.077387 kcal Electronic energy + Delta-G solvation = -25372.538069 eV Core-core repulsion = 21798.262834 eV Total energy + Delta-G solvation = -3574.275236 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10375 -39.00281 -38.53464 -36.33073 -33.62006 -33.16588 -31.46203 -30.92856 -29.31422 -29.06709 -27.67887 -26.76626 -24.66191 -23.34766 -22.98891 -21.31390 -20.85343 -20.15020 -19.34554 -18.08736 -16.99653 -16.78933 -16.01417 -15.35184 -15.12098 -14.93702 -14.78040 -14.74077 -14.52848 -13.83283 -13.67995 -13.54103 -13.11960 -12.77745 -12.63018 -12.46868 -12.26272 -11.98474 -11.67829 -11.54784 -11.31652 -11.18032 -11.09246 -10.80211 -10.67394 -10.45130 -10.16234 -9.92804 -9.81240 -9.46445 -9.08219 -9.06775 -8.69078 -8.00493 -7.28354 -6.95830 -6.70031 -4.28197 0.95671 1.27339 2.39878 2.64718 2.70340 2.81860 3.07779 3.10685 3.15950 3.49227 3.79840 3.93846 4.33589 4.56202 4.65578 4.82125 5.00882 5.09441 5.27153 5.33189 5.52970 5.56106 5.62245 5.65101 5.71830 5.86541 5.89748 5.96952 6.01987 6.10725 6.27434 6.36484 6.39063 6.41784 6.58279 6.73372 6.94672 7.03078 7.08512 7.16571 7.39805 7.45862 7.51312 7.75233 7.94830 8.05334 8.16269 8.43395 8.61241 8.87308 8.93767 10.19502 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009856 B = 0.004349 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.269076 B = 6436.875130 C = 8864.134915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.324 6.324 3 C 0.011 3.989 4 C -0.169 4.169 5 C -0.190 4.190 6 C 0.087 3.913 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.077 3.923 10 N -0.801 5.801 11 Si 0.905 3.095 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.263 1.263 15 C -0.117 4.117 16 C -0.028 4.028 17 C -0.137 4.137 18 C 0.086 3.914 19 N -0.308 5.308 20 N -0.334 5.334 21 C 0.180 3.820 22 C -0.147 4.147 23 C -0.091 4.091 24 C -0.143 4.143 25 C -0.097 4.097 26 C -0.130 4.130 27 C 0.052 3.948 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.279 0.721 34 H 0.128 0.872 35 H 0.186 0.814 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.135 0.865 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.992 -10.791 -1.531 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.240 6.240 3 C -0.032 4.032 4 C -0.188 4.188 5 C -0.210 4.210 6 C 0.085 3.915 7 C -0.493 4.493 8 H 0.095 0.905 9 C -0.139 4.139 10 N -0.427 5.427 11 Si 0.730 3.270 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.187 1.187 15 C -0.137 4.137 16 C -0.030 4.030 17 C -0.147 4.147 18 C -0.102 4.102 19 N -0.126 5.126 20 N -0.110 5.110 21 C 0.087 3.913 22 C -0.168 4.168 23 C -0.110 4.110 24 C -0.162 4.162 25 C -0.116 4.116 26 C -0.150 4.150 27 C -0.088 4.088 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.203 0.797 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.153 0.847 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.785 -12.181 -1.430 12.835 hybrid contribution -0.214 1.819 -0.133 1.836 sum 3.570 -10.362 -1.563 11.071 Atomic orbital electron populations 1.22712 0.81221 1.01674 1.00263 1.85877 1.18808 1.28347 1.90927 1.18527 0.90746 0.82983 1.10985 1.20344 0.97410 0.92836 1.08165 1.20623 0.94845 0.95121 1.10366 1.17489 0.90543 0.93288 0.90185 1.19440 0.98420 0.94998 1.36454 0.90515 1.25817 0.97931 0.97634 0.92561 1.69819 1.16142 1.33739 1.23027 0.86358 0.79745 0.81887 0.79009 1.19356 1.20418 1.18708 1.21299 0.99871 0.89192 1.03333 1.17165 0.88117 0.90730 1.07023 1.18989 0.99392 0.97052 0.99263 1.24111 0.96246 0.90902 0.98896 1.77167 1.08483 1.23357 1.03551 1.45560 1.25742 1.13162 1.26497 1.17599 0.87735 0.92587 0.93398 1.20941 0.97837 1.01504 0.96531 1.20950 0.95934 0.94752 0.99320 1.21143 1.00978 0.95912 0.98195 1.21011 0.95058 0.99728 0.95770 1.20888 0.98831 0.93470 1.01816 1.22656 0.97303 0.87215 1.01603 0.94028 0.90123 0.93938 0.88470 0.88665 0.91040 0.85441 0.79714 0.84929 0.85242 0.85830 0.85491 0.84666 0.80394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.55 16 2 O -0.32 -6.42 9.37 -18.64 -0.17 -6.59 16 3 C 0.01 0.25 6.70 -38.45 -0.26 -0.01 16 4 C -0.17 -3.66 8.95 -39.90 -0.36 -4.02 16 5 C -0.19 -4.48 9.72 -39.22 -0.38 -4.86 16 6 C 0.09 2.23 5.57 -106.84 -0.60 1.64 16 7 C -0.46 -11.88 9.03 -37.84 -0.34 -12.22 16 8 H 0.08 1.90 7.91 -52.49 -0.41 1.49 16 9 C 0.08 1.87 5.13 -17.35 -0.09 1.79 16 10 N -0.80 -19.82 10.96 55.54 0.61 -19.21 16 11 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 16 12 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 13 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 14 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 15 C -0.12 -2.92 8.33 -38.57 -0.32 -3.24 16 16 C -0.03 -0.65 5.76 -104.79 -0.60 -1.26 16 17 C -0.14 -2.85 5.31 -105.33 -0.56 -3.41 16 18 C 0.09 1.64 11.29 -17.02 -0.19 1.45 16 19 N -0.31 -5.80 11.82 30.82 0.36 -5.43 16 20 N -0.33 -6.08 3.79 -10.46 -0.04 -6.12 16 21 C 0.18 2.82 6.69 -83.60 -0.56 2.26 16 22 C -0.15 -1.99 9.45 -39.40 -0.37 -2.37 16 23 C -0.09 -1.00 10.04 -39.61 -0.40 -1.39 16 24 C -0.14 -1.45 10.04 -39.55 -0.40 -1.84 16 25 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 26 C -0.13 -1.78 9.66 -39.40 -0.38 -2.17 16 27 C 0.05 1.01 10.66 -16.74 -0.18 0.83 16 28 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 31 H 0.10 1.83 6.25 -52.49 -0.33 1.50 16 32 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 34 H 0.13 3.29 6.17 -52.49 -0.32 2.96 16 35 H 0.19 3.13 8.06 -52.48 -0.42 2.70 16 36 H 0.13 1.73 6.73 -52.49 -0.35 1.38 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.14 1.88 7.69 -52.49 -0.40 1.47 16 41 H 0.18 3.21 7.03 -52.49 -0.37 2.84 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -28.75 352.84 -9.00 -37.75 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -4.66 Total: 9.69 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -5.39 Total: -28.73 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.93 Total: -30.75 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.17 Total: -6.59 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.75 -9.00 -37.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241752916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.830 kcal (2) G-P(sol) polarization free energy of solvation -28.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds