Wall clock time and date at job start Tue Mar 31 2020 13:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35646 * 116.99762 * 2 1 4 4 C 1.39121 * 119.87888 * 359.97438 * 3 2 1 5 5 C 1.36438 * 120.43116 * 180.02562 * 4 3 2 6 6 C 1.40905 * 120.17184 * 359.97438 * 5 4 3 7 7 C 1.41239 * 120.12129 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99537 * 24.50104 * 7 6 5 9 9 C 1.39854 * 119.99816 * 204.50225 * 7 6 5 10 10 N 1.30895 * 120.00212 * 17.82165 * 9 7 6 11 11 Si 1.86806 * 119.99696 * 197.82491 * 9 7 6 12 12 H 1.48492 * 109.47190 * 90.00035 * 11 9 7 13 13 H 1.48503 * 109.46757 * 210.00015 * 11 9 7 14 14 H 1.48499 * 109.46872 * 329.99853 * 11 9 7 15 15 C 1.40642 * 119.75949 * 359.76992 * 6 5 4 16 16 C 1.38518 * 119.57244 * 0.49896 * 15 6 5 17 17 C 1.48439 * 120.08799 * 179.75211 * 16 15 6 18 18 C 1.40908 * 126.21958 * 129.75501 * 17 16 15 19 19 N 1.30704 * 108.14741 * 179.73578 * 18 17 16 20 20 N 1.40014 * 108.54535 * 0.25600 * 19 18 17 21 21 C 1.40150 * 125.91235 * 179.97438 * 20 19 18 22 22 C 1.38850 * 120.06549 * 179.75387 * 21 20 19 23 23 C 1.38117 * 119.92905 * 179.69659 * 22 21 20 24 24 C 1.38283 * 120.06414 * 0.58016 * 23 22 21 25 25 C 1.38281 * 120.14060 * 359.71463 * 24 23 22 26 26 C 1.38119 * 120.06402 * 359.97438 * 25 24 23 27 27 C 1.35136 * 108.17514 * 0.02562 * 20 19 18 28 28 H 1.09003 * 109.47235 * 60.00432 * 1 2 3 29 29 H 1.09006 * 109.46756 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47401 * 299.99954 * 1 2 3 31 31 H 1.07993 * 119.78166 * 0.04523 * 4 3 2 32 32 H 1.07996 * 119.91225 * 180.02562 * 5 4 3 33 33 H 0.97001 * 119.99813 * 180.02562 * 10 9 7 34 34 H 1.07996 * 120.21759 * 180.25505 * 15 6 5 35 35 H 1.08005 * 125.92235 * 359.97438 * 18 17 16 36 36 H 1.08000 * 120.03439 * 359.97438 * 22 21 20 37 37 H 1.07990 * 119.96715 * 180.29609 * 23 22 21 38 38 H 1.08005 * 119.92770 * 179.74582 * 24 23 22 39 39 H 1.07994 * 119.96652 * 180.02562 * 25 24 23 40 40 H 1.08002 * 120.03161 * 180.02562 * 26 25 24 41 41 H 1.08000 * 126.21852 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2845 2.3738 -0.0005 5 6 1.8921 3.5954 -0.0011 6 6 3.2982 3.6870 -0.0005 7 6 3.9261 4.9521 -0.0005 8 1 3.4036 5.8142 0.3870 9 6 5.2244 5.0884 -0.5024 10 7 5.7276 4.1606 -1.2765 11 14 6.2403 6.5946 -0.0677 12 1 7.0139 6.3290 1.1717 13 1 7.1763 6.8980 -1.1800 14 1 5.3384 7.7539 0.1505 15 6 4.0742 2.5140 0.0055 16 6 3.4466 1.2791 0.0003 17 6 4.2545 0.0338 0.0010 18 6 4.0941 -1.0622 0.8719 19 7 4.9855 -1.9652 0.5583 20 7 5.7487 -1.4845 -0.5126 21 6 6.8060 -2.1600 -1.1371 22 6 7.4797 -1.5686 -2.1974 23 6 8.5253 -2.2342 -2.8067 24 6 8.8937 -3.4933 -2.3695 25 6 8.2207 -4.0875 -1.3177 26 6 7.1784 -3.4242 -0.7002 27 6 5.2900 -0.2560 -0.8391 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2064 2.3108 -0.0002 32 1 1.2938 4.4945 -0.0011 33 1 6.6282 4.2550 -1.6243 34 1 5.1524 2.5756 0.0101 35 1 3.3594 -1.1436 1.6593 36 1 7.1892 -0.5872 -2.5424 37 1 9.0528 -1.7727 -3.6283 38 1 9.7090 -4.0135 -2.8502 39 1 8.5110 -5.0707 -0.9782 40 1 6.6534 -3.8886 0.1215 41 1 5.6707 0.3791 -1.6254 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241752916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:11 Heat of formation + Delta-G solvation = 77.072256 kcal Electronic energy + Delta-G solvation = -25373.102014 eV Core-core repulsion = 21798.262834 eV Total energy + Delta-G solvation = -3574.839181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.50822 -40.41156 -39.78745 -38.02089 -35.26076 -34.57621 -32.95095 -32.01343 -30.93796 -30.50816 -29.08922 -28.22199 -26.39638 -24.64347 -24.09284 -22.77944 -22.50196 -21.48378 -20.88340 -19.51913 -18.65354 -18.32336 -17.09664 -17.02114 -16.45234 -16.34925 -16.13818 -16.07197 -15.89011 -15.29436 -14.86850 -14.80646 -14.51912 -14.29708 -14.04578 -13.88809 -13.74118 -13.60423 -13.16112 -12.86604 -12.74208 -12.58181 -12.43260 -12.29735 -12.23470 -11.84591 -11.70961 -11.52394 -11.27453 -11.17860 -10.84536 -10.20214 -10.02392 -9.42306 -8.97849 -8.69474 -8.43595 -6.17758 -0.18133 0.33223 0.80098 1.05611 1.21564 1.39036 1.40896 1.51654 1.52359 1.89628 2.24662 2.75848 2.80823 2.89086 3.44435 3.70706 3.80908 3.95222 3.99978 4.23429 4.27265 4.33407 4.37156 4.43397 4.51688 4.54206 4.63424 4.71561 4.75395 4.80358 4.95298 5.02253 5.13402 5.27407 5.29002 5.33511 5.38562 5.49229 5.55579 5.64679 5.70069 5.80484 5.94544 6.11336 6.20060 6.32191 6.59636 6.62857 6.86522 7.00338 7.14875 8.40842 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009856 B = 0.004349 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.269076 B = 6436.875130 C = 8864.134915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.335 6.335 3 C 0.017 3.983 4 C -0.168 4.168 5 C -0.203 4.203 6 C 0.057 3.943 7 C -0.500 4.500 8 H 0.073 0.927 9 C 0.039 3.961 10 N -0.828 5.828 11 Si 0.974 3.026 12 H -0.267 1.267 13 H -0.269 1.269 14 H -0.259 1.259 15 C -0.136 4.136 16 C -0.034 4.034 17 C -0.167 4.167 18 C 0.082 3.918 19 N -0.313 5.313 20 N -0.328 5.328 21 C 0.135 3.865 22 C -0.158 4.158 23 C -0.090 4.090 24 C -0.127 4.127 25 C -0.093 4.093 26 C -0.141 4.141 27 C 0.053 3.947 28 H 0.047 0.953 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.285 0.715 34 H 0.109 0.891 35 H 0.201 0.799 36 H 0.127 0.873 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.127 0.873 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 -12.505 -2.261 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.250 6.250 3 C -0.027 4.027 4 C -0.186 4.186 5 C -0.223 4.223 6 C 0.055 3.945 7 C -0.530 4.530 8 H 0.092 0.908 9 C -0.175 4.175 10 N -0.455 5.455 11 Si 0.796 3.204 12 H -0.192 1.192 13 H -0.194 1.194 14 H -0.183 1.183 15 C -0.155 4.155 16 C -0.036 4.036 17 C -0.177 4.177 18 C -0.105 4.105 19 N -0.132 5.132 20 N -0.103 5.103 21 C 0.043 3.957 22 C -0.179 4.179 23 C -0.108 4.108 24 C -0.146 4.146 25 C -0.111 4.111 26 C -0.161 4.161 27 C -0.089 4.089 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.218 0.782 36 H 0.145 0.855 37 H 0.176 0.824 38 H 0.181 0.819 39 H 0.177 0.823 40 H 0.145 0.855 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.795 -13.934 -2.167 14.895 hybrid contribution -0.508 2.098 -0.003 2.159 sum 4.286 -11.836 -2.171 12.774 Atomic orbital electron populations 1.23071 0.78516 1.04160 1.01072 1.85872 1.21551 1.26997 1.90577 1.18649 0.90711 0.84048 1.09319 1.20634 0.99077 0.91947 1.06969 1.20823 0.94354 0.96400 1.10711 1.17816 0.91752 0.93694 0.91252 1.19658 0.99912 0.95134 1.38272 0.90834 1.26573 0.98443 1.00556 0.91949 1.69876 1.16693 1.35378 1.23548 0.85322 0.78076 0.78271 0.78773 1.19201 1.19384 1.18320 1.21154 0.99044 0.90086 1.05257 1.17355 0.89208 0.90947 1.06074 1.18985 1.00520 0.97153 1.01034 1.24261 0.96775 0.90299 0.99155 1.77099 1.08597 1.23488 1.04010 1.45745 1.25908 1.12715 1.25972 1.18055 0.88520 0.93934 0.95210 1.21118 0.98701 1.01681 0.96408 1.21354 0.94828 0.95139 0.99524 1.21647 1.00790 0.95194 0.96938 1.21413 0.93602 1.00760 0.95329 1.21025 0.99924 0.93013 1.02105 1.22694 0.96907 0.87834 1.01433 0.93463 0.86978 0.92707 0.85265 0.87808 0.90421 0.87319 0.78209 0.85502 0.82394 0.81935 0.82270 0.85496 0.80169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.80 113.37 1.11 1.86 16 2 O -0.33 -12.93 9.37 -89.60 -0.84 -13.77 16 3 C 0.02 0.76 6.70 23.00 0.15 0.91 16 4 C -0.17 -7.24 8.95 22.06 0.20 -7.04 16 5 C -0.20 -9.81 9.72 22.50 0.22 -9.59 16 6 C 0.06 3.05 5.57 -21.30 -0.12 2.93 16 7 C -0.50 -26.78 9.03 23.40 0.21 -26.57 16 8 H 0.07 3.82 7.91 -2.91 -0.02 3.79 16 9 C 0.04 1.94 5.13 85.22 0.44 2.38 16 10 N -0.83 -42.62 10.96 21.81 0.24 -42.38 16 11 Si 0.97 38.42 29.60 68.60 2.03 40.45 16 12 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 13 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 14 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 15 C -0.14 -7.12 8.33 22.92 0.19 -6.93 16 16 C -0.03 -1.62 5.76 -19.97 -0.12 -1.73 16 17 C -0.17 -7.21 5.31 -20.32 -0.11 -7.31 16 18 C 0.08 3.19 11.29 85.51 0.97 4.15 16 19 N -0.31 -12.04 11.82 -56.40 -0.67 -12.70 16 20 N -0.33 -12.27 3.79 -187.00 -0.71 -12.98 16 21 C 0.13 4.23 6.69 38.10 0.25 4.48 16 22 C -0.16 -4.22 9.45 22.39 0.21 -4.01 16 23 C -0.09 -1.73 10.04 22.25 0.22 -1.51 16 24 C -0.13 -2.05 10.04 22.29 0.22 -1.83 16 25 C -0.09 -1.73 10.04 22.25 0.22 -1.50 16 26 C -0.14 -3.74 9.66 22.39 0.22 -3.53 16 27 C 0.05 2.15 10.66 83.77 0.89 3.05 16 28 H 0.05 1.27 7.65 -2.39 -0.02 1.25 16 29 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.05 1.40 7.65 -2.39 -0.02 1.38 16 31 H 0.13 4.62 6.25 -2.91 -0.02 4.61 16 32 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 33 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 34 H 0.11 6.01 6.17 -2.91 -0.02 5.99 16 35 H 0.20 6.84 8.06 -2.91 -0.02 6.82 16 36 H 0.13 3.42 6.73 -2.91 -0.02 3.40 16 37 H 0.16 2.10 8.06 -2.92 -0.02 2.08 16 38 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.13 3.51 7.69 -2.91 -0.02 3.48 16 41 H 0.18 6.97 7.03 -2.91 -0.02 6.95 16 Total: -1.00 -65.37 352.84 6.50 -58.86 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: 1.06 Total: 34.32 kcal Atomic # 6 Polarization: -57.18 SS G_CDS: 5.39 Total: -51.79 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -1.14 Total: -68.07 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.84 Total: -13.77 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -65.37 6.50 -58.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241752916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.937 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds