Wall clock time and date at job start Tue Mar 31 2020 12:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42896 * 109.47341 * 2 1 4 4 C 1.35738 * 117.00373 * 179.97438 * 3 2 1 5 5 C 1.39606 * 119.73463 * 359.97438 * 4 3 2 6 6 C 1.36032 * 121.09255 * 180.02562 * 5 4 3 7 7 C 1.40687 * 120.19074 * 0.02562 * 6 5 4 8 8 C 1.40533 * 121.09156 * 179.97438 * 7 6 5 9 9 C 1.36164 * 119.67881 * 179.97438 * 8 7 6 10 10 C 1.39276 * 120.95497 * 0.02562 * 9 8 7 11 11 C 1.36254 * 120.91594 * 0.02562 * 10 9 8 12 12 C 1.40204 * 119.68969 * 0.25702 * 11 10 9 13 13 C 1.39039 * 119.73767 * 179.97438 * 4 3 2 14 14 C 1.47833 * 120.38437 * 0.02562 * 13 4 3 15 15 C 1.40272 * 120.00784 * 310.67903 * 14 13 4 16 16 N 1.32114 * 120.27671 * 180.02562 * 15 14 13 17 17 C 1.31930 * 120.31108 * 0.02562 * 16 15 14 18 18 C 1.40837 * 120.00870 * 0.02562 * 17 16 15 19 19 C 1.41280 * 120.13937 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99865 * 6.30934 * 19 18 17 21 21 C 1.40011 * 120.00083 * 186.30903 * 19 18 17 22 22 N 1.30748 * 120.00505 * 6.59617 * 21 19 18 23 23 Si 1.86808 * 119.99649 * 186.59999 * 21 19 18 24 24 H 1.48493 * 109.47332 * 59.99823 * 23 21 19 25 25 H 1.48505 * 109.46824 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46719 * 299.99615 * 23 21 19 27 27 N 1.32693 * 120.00679 * 130.40768 * 14 13 4 28 28 H 1.09001 * 109.47734 * 300.00420 * 1 2 3 29 29 H 1.09002 * 109.46994 * 60.00757 * 1 2 3 30 30 H 1.09001 * 109.47374 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47734 * 239.99580 * 2 1 3 32 32 H 1.09007 * 109.47236 * 119.99629 * 2 1 3 33 33 H 1.07998 * 119.45785 * 359.97438 * 5 4 3 34 34 H 1.07995 * 119.90646 * 179.97438 * 6 5 4 35 35 H 1.07994 * 120.15800 * 359.97438 * 8 7 6 36 36 H 1.08004 * 119.52442 * 180.02562 * 9 8 7 37 37 H 1.07994 * 119.54366 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.15650 * 179.97438 * 11 10 9 39 39 H 1.08003 * 119.86655 * 0.02562 * 15 14 13 40 40 H 1.07992 * 119.99893 * 179.97438 * 17 16 15 41 41 H 0.96993 * 120.00444 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3520 1.5251 0.0005 5 6 4.1973 0.4141 0.0016 6 6 5.5497 0.5603 0.0027 7 6 6.1224 1.8454 0.0033 8 6 7.5170 2.0184 0.0050 9 6 8.0404 3.2755 0.0050 10 6 7.2131 4.3959 0.0039 11 6 5.8569 4.2648 0.0033 12 6 5.2829 2.9856 0.0093 13 6 3.8775 2.8124 0.0000 14 6 2.9794 3.9866 -0.0005 15 6 1.9244 4.0625 -0.9218 16 7 1.1189 5.1097 -0.9274 17 6 1.2998 6.0934 -0.0671 18 6 2.3558 6.0307 0.8627 19 6 2.5524 7.0829 1.7849 20 1 1.8347 7.8876 1.8471 21 6 3.6775 7.0824 2.6182 22 7 4.6107 6.1810 2.4562 23 14 3.8454 8.3696 3.9615 24 1 2.7021 8.2552 4.9023 25 1 5.1167 8.1535 4.6980 26 1 3.8511 9.7235 3.3517 27 7 3.1679 4.9666 0.8740 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.7705 -0.5780 0.0024 34 1 6.1857 -0.3125 0.0039 35 1 8.1704 1.1586 0.0062 36 1 9.1126 3.4056 0.0058 37 1 7.6527 5.3823 0.0044 38 1 5.2270 5.1421 0.0029 39 1 1.7698 3.2615 -1.6297 40 1 0.6386 6.9472 -0.0763 41 1 5.3903 6.1809 3.0332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241923288.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:54 Heat of formation + Delta-G solvation = 28.783035 kcal Electronic energy + Delta-G solvation = -26441.453627 eV Core-core repulsion = 22864.520468 eV Total energy + Delta-G solvation = -3576.933158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.71336 -40.47019 -39.80620 -36.49997 -35.90314 -34.84046 -33.29535 -32.43133 -31.68065 -30.62673 -29.49662 -27.78314 -25.30837 -24.68392 -24.01960 -23.70053 -22.90768 -21.69853 -19.44590 -19.30116 -18.24326 -17.62428 -17.43315 -17.11053 -16.95777 -16.63643 -16.36471 -15.72186 -15.15508 -15.03540 -14.75324 -14.47995 -14.44984 -14.11149 -13.78971 -13.67836 -13.42205 -13.35111 -13.27881 -13.09985 -12.95837 -12.58687 -12.22198 -12.12474 -12.07051 -11.96335 -11.72071 -11.55014 -11.40641 -11.35740 -11.03856 -10.51668 -9.69756 -9.34143 -9.25007 -8.46651 -8.25492 -6.61945 -0.41795 0.18847 0.59052 1.04847 1.33772 1.39405 1.51577 1.54042 2.12606 2.18577 2.33173 2.78692 3.26253 3.54070 3.73878 3.87330 4.02475 4.07816 4.08144 4.10536 4.21880 4.26671 4.34650 4.38307 4.48483 4.54169 4.56652 4.59716 4.75274 4.85113 4.93203 5.01378 5.09212 5.13081 5.17028 5.21624 5.27350 5.35869 5.38147 5.39786 5.67650 5.76266 5.81637 5.98672 6.11607 6.20839 6.49902 6.57423 6.73439 7.30509 7.89446 8.31854 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.005967 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.907222 B = 4691.009719 C = 6635.207319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.331 6.331 4 C 0.135 3.865 5 C -0.192 4.192 6 C -0.053 4.053 7 C -0.101 4.101 8 C -0.098 4.098 9 C -0.128 4.128 10 C -0.125 4.125 11 C -0.102 4.102 12 C -0.015 4.015 13 C -0.097 4.097 14 C 0.150 3.850 15 C -0.098 4.098 16 N -0.440 5.440 17 C -0.092 4.092 18 C 0.177 3.823 19 C -0.440 4.440 20 H 0.100 0.900 21 C 0.026 3.974 22 N -0.733 5.733 23 Si 0.990 3.010 24 H -0.262 1.262 25 H -0.268 1.268 26 H -0.254 1.254 27 N -0.462 5.462 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.167 0.833 34 H 0.177 0.823 35 H 0.167 0.833 36 H 0.152 0.848 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.356 -13.475 -1.355 14.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.088 3.912 5 C -0.210 4.210 6 C -0.070 4.070 7 C -0.102 4.102 8 C -0.116 4.116 9 C -0.146 4.146 10 C -0.143 4.143 11 C -0.121 4.121 12 C -0.016 4.016 13 C -0.100 4.100 14 C 0.003 3.997 15 C -0.257 4.257 16 N -0.152 5.152 17 C -0.260 4.260 18 C 0.051 3.949 19 C -0.471 4.471 20 H 0.118 0.882 21 C -0.198 4.198 22 N -0.353 5.353 23 Si 0.809 3.191 24 H -0.186 1.186 25 H -0.193 1.193 26 H -0.178 1.178 27 N -0.181 5.181 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.184 0.816 34 H 0.195 0.805 35 H 0.184 0.816 36 H 0.170 0.830 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.374 -13.405 -1.285 14.899 hybrid contribution -0.509 1.024 0.498 1.248 sum 5.864 -12.381 -0.787 13.722 Atomic orbital electron populations 1.21793 0.92352 1.04102 1.02336 1.23134 0.96498 0.80807 1.02747 1.86203 1.18812 1.31457 1.88064 1.19100 0.83191 0.92833 0.96072 1.21189 0.94400 0.97875 1.07575 1.21335 0.94565 0.96459 0.94685 1.18361 0.94593 0.92677 1.04521 1.21310 0.92587 0.98675 0.99021 1.21091 1.00794 0.91969 1.00723 1.21019 0.92953 0.99963 1.00352 1.21150 0.96119 0.96614 0.98186 1.17940 0.90965 0.94409 0.98244 1.18051 0.92049 0.89814 1.10051 1.20836 0.92929 0.93439 0.92536 1.22667 0.98508 0.99232 1.05339 1.67624 1.25516 1.00908 1.21113 1.23393 1.03532 0.99986 0.99087 1.19848 0.89685 0.92527 0.92876 1.19930 1.06963 1.05361 1.14849 0.88215 1.27003 0.94252 0.98497 1.00092 1.70137 1.05253 1.28168 1.31746 0.85145 0.78665 0.78168 0.77096 1.18609 1.19263 1.17837 1.69756 1.26574 1.00462 1.21274 0.93425 0.92587 0.87110 0.89822 0.90742 0.81559 0.80523 0.81552 0.82993 0.86198 0.87850 0.84697 0.83591 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 10.28 71.98 0.74 -2.50 16 2 C 0.04 1.01 5.45 71.98 0.39 1.41 16 3 O -0.33 -12.29 8.35 -90.62 -0.76 -13.05 16 4 C 0.14 5.11 6.59 22.79 0.15 5.26 16 5 C -0.19 -5.23 8.93 22.09 0.20 -5.03 16 6 C -0.05 -1.31 9.74 22.36 0.22 -1.10 16 7 C -0.10 -3.27 5.74 -21.29 -0.12 -3.39 16 8 C -0.10 -2.53 9.76 22.35 0.22 -2.31 16 9 C -0.13 -3.53 9.95 22.04 0.22 -3.31 16 10 C -0.12 -4.50 9.95 22.06 0.22 -4.28 16 11 C -0.10 -4.61 9.14 22.29 0.20 -4.40 16 12 C -0.01 -0.64 5.76 -21.14 -0.12 -0.76 16 13 C -0.10 -4.49 5.65 -19.71 -0.11 -4.60 16 14 C 0.15 8.07 5.50 42.05 0.23 8.30 16 15 C -0.10 -5.21 9.95 85.15 0.85 -4.36 16 16 N -0.44 -24.00 10.47 -191.86 -2.01 -26.01 16 17 C -0.09 -5.03 10.97 85.31 0.94 -4.10 16 18 C 0.18 10.21 6.52 40.22 0.26 10.47 16 19 C -0.44 -23.68 9.15 23.45 0.21 -23.47 16 20 H 0.10 4.92 7.86 -2.91 -0.02 4.90 16 21 C 0.03 1.29 5.48 85.28 0.47 1.76 16 22 N -0.73 -38.52 11.50 21.83 0.25 -38.26 16 23 Si 0.99 37.39 29.57 68.60 2.03 39.42 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 26 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 27 N -0.46 -26.77 6.22 -177.80 -1.11 -27.88 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.56 7.64 -2.39 -0.02 1.55 16 32 H 0.07 1.51 7.64 -2.38 -0.02 1.49 16 33 H 0.17 3.06 6.22 -2.91 -0.02 3.04 16 34 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 35 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.12 4.00 8.06 -2.91 -0.02 3.97 16 38 H 0.10 5.58 6.01 -2.91 -0.02 5.56 16 39 H 0.14 6.64 7.61 -2.91 -0.02 6.62 16 40 H 0.15 7.22 8.06 -2.91 -0.02 7.20 16 41 H 0.28 13.59 8.29 -92.71 -0.77 12.82 16 Total: -1.00 -73.97 347.91 4.63 -69.34 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 1.06 Total: 32.86 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 5.16 Total: -36.41 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -2.86 Total: -92.15 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.76 Total: -13.05 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -73.97 4.63 -69.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241923288.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.119 kcal (2) G-P(sol) polarization free energy of solvation -73.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds