Wall clock time and date at job start Tue Mar 31 2020 13:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36887 * 126.50118 * 2 1 4 4 C 1.34885 * 107.03564 * 179.97438 * 3 2 1 5 5 N 1.33772 * 108.39483 * 359.76442 * 4 3 2 6 6 C 1.31498 * 109.25569 * 0.39408 * 5 4 3 7 7 C 1.47784 * 125.84464 * 179.87419 * 6 5 4 8 8 C 1.39677 * 120.01322 * 341.06295 * 7 6 5 9 9 C 1.37657 * 119.99004 * 179.97438 * 8 7 6 10 10 C 1.39559 * 120.00910 * 359.97438 * 9 8 7 11 11 C 1.48164 * 119.98331 * 180.02562 * 10 9 8 12 12 C 1.39362 * 120.16755 * 309.72911 * 11 10 9 13 13 C 1.37980 * 119.93821 * 180.24894 * 12 11 10 14 14 C 1.38472 * 120.27964 * 0.02983 * 13 12 11 15 15 C 1.38101 * 120.33752 * 359.97438 * 14 13 12 16 16 C 1.38754 * 120.05695 * 359.97438 * 15 14 13 17 17 O 1.35647 * 120.13993 * 179.97438 * 16 15 14 18 18 C 1.34810 * 117.00336 * 354.40672 * 17 16 15 19 19 H 1.08008 * 119.99701 * 5.04316 * 18 17 16 20 20 C 1.38643 * 120.00513 * 185.04352 * 18 17 16 21 21 N 1.31554 * 120.00153 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99794 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47403 * 89.99937 * 22 20 18 24 24 H 1.48503 * 109.47136 * 210.00232 * 22 20 18 25 25 H 1.48499 * 109.47317 * 329.99827 * 22 20 18 26 26 C 1.39554 * 120.02888 * 0.28664 * 10 9 8 27 27 C 1.37658 * 120.01632 * 359.43549 * 26 10 9 28 28 H 1.09000 * 109.47482 * 264.16788 * 1 2 3 29 29 H 1.09002 * 109.47147 * 24.17060 * 1 2 3 30 30 H 1.08998 * 109.47016 * 144.16116 * 1 2 3 31 31 H 1.08003 * 126.48682 * 359.97438 * 3 2 1 32 32 H 1.08004 * 125.80277 * 179.97438 * 4 3 2 33 33 H 1.08010 * 120.00753 * 359.96056 * 8 7 6 34 34 H 1.08001 * 119.99655 * 180.02562 * 9 8 7 35 35 H 1.08004 * 120.03145 * 0.26015 * 12 11 10 36 36 H 1.08001 * 119.85948 * 180.02562 * 13 12 11 37 37 H 1.08005 * 119.82693 * 180.02562 * 14 13 12 38 38 H 1.08003 * 119.97093 * 180.02562 * 15 14 13 39 39 H 0.97008 * 120.00031 * 180.02562 * 21 20 18 40 40 H 1.08001 * 119.98939 * 179.72706 * 26 10 9 41 41 H 1.07993 * 120.00598 * 180.25558 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2793 1.1004 0.0000 4 6 3.5510 0.6509 0.0006 5 7 3.5260 -0.6866 0.0061 6 6 2.2767 -1.0970 0.0006 7 6 1.8284 -2.5052 0.0013 8 6 2.7086 -3.5188 -0.3844 9 6 2.2907 -4.8304 -0.3830 10 6 0.9879 -5.1475 0.0042 11 6 0.5389 -6.5594 0.0060 12 6 0.7393 -7.3595 -1.1173 13 6 0.3147 -8.6724 -1.1123 14 6 -0.3112 -9.1995 0.0048 15 6 -0.5158 -8.4169 1.1241 16 6 -0.0934 -7.0953 1.1347 17 8 -0.2939 -6.3249 2.2331 18 6 -1.0116 -6.8663 3.2377 19 1 -1.3282 -7.8973 3.1805 20 6 -1.3434 -6.0997 4.3442 21 7 -2.0442 -6.6279 5.3242 22 14 -0.7952 -4.3167 4.4434 23 1 -1.8340 -3.4449 3.8381 24 1 -0.5983 -3.9377 5.8657 25 1 0.4825 -4.1498 3.7053 26 6 0.1064 -4.1347 0.3845 27 6 0.5248 -2.8233 0.3890 28 1 -0.3634 -0.1044 1.0223 29 1 -0.3633 0.9376 -0.4208 30 1 -0.3633 -0.8331 -0.6017 31 1 1.9633 2.1331 -0.0004 32 1 4.4386 1.2662 0.0003 33 1 3.7170 -3.2736 -0.6840 34 1 2.9713 -5.6143 -0.6809 35 1 1.2268 -6.9524 -1.9908 36 1 0.4710 -9.2914 -1.9834 37 1 -0.6403 -10.2282 0.0009 38 1 -1.0042 -8.8342 1.9923 39 1 -2.2766 -6.0913 6.0983 40 1 -0.9030 -4.3804 0.6799 41 1 -0.1563 -2.0401 0.6873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242495695.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:26 Heat of formation + Delta-G solvation = 92.815422 kcal Electronic energy + Delta-G solvation = -25630.731409 eV Core-core repulsion = 22056.574903 eV Total energy + Delta-G solvation = -3574.156506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.01471 -39.63698 -38.29148 -36.56357 -34.24579 -32.82560 -32.40539 -30.70779 -30.01728 -29.23282 -27.70830 -27.12897 -25.35151 -23.42441 -22.71812 -21.41542 -20.95395 -20.77663 -19.97638 -17.94451 -17.51852 -17.37950 -16.02308 -15.80915 -15.29550 -15.08542 -14.73623 -14.55346 -13.94461 -13.90242 -13.83638 -13.77270 -13.56575 -13.23902 -13.15122 -12.89088 -12.60461 -12.49844 -12.28813 -12.27064 -11.59793 -11.49090 -10.92495 -10.89965 -10.74055 -10.67605 -10.22593 -10.01242 -9.74532 -9.48098 -9.32261 -8.95515 -8.68078 -8.35206 -7.76562 -7.27972 -6.50459 -4.16326 0.97722 1.71238 1.91796 2.19375 2.33192 2.64060 3.14151 3.18535 3.20227 3.38057 4.07194 4.16688 4.36309 4.43505 4.50593 4.71108 4.73157 4.90886 5.00021 5.05562 5.14941 5.20666 5.22653 5.34841 5.49655 5.54201 5.67312 5.68122 5.83697 5.89160 6.07718 6.12543 6.19573 6.36220 6.39421 6.50987 6.59333 6.71896 6.78456 6.82172 7.01911 7.06939 7.10552 7.21326 7.26659 7.51512 7.70635 7.94222 8.04012 8.84702 9.46105 10.56737 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.004581 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.776265 B = 6110.952089 C = 7966.886689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.458 5.458 3 C -0.060 4.060 4 C -0.027 4.027 5 N -0.482 5.482 6 C 0.257 3.743 7 C -0.036 4.036 8 C -0.077 4.077 9 C -0.116 4.116 10 C 0.006 3.994 11 C -0.140 4.140 12 C -0.059 4.059 13 C -0.207 4.207 14 C -0.069 4.069 15 C -0.221 4.221 16 C 0.174 3.826 17 O -0.204 6.204 18 C -0.391 4.391 19 H 0.108 0.892 20 C 0.069 3.931 21 N -0.875 5.875 22 Si 0.892 3.108 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.252 1.252 26 C -0.093 4.093 27 C -0.119 4.119 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.280 0.720 40 H 0.130 0.870 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 10.312 -12.365 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.140 5.140 3 C -0.193 4.193 4 C -0.176 4.176 5 N -0.199 5.199 6 C -0.002 4.002 7 C -0.038 4.038 8 C -0.097 4.097 9 C -0.134 4.134 10 C 0.005 3.995 11 C -0.141 4.141 12 C -0.078 4.078 13 C -0.226 4.226 14 C -0.087 4.087 15 C -0.240 4.240 16 C 0.121 3.879 17 O -0.108 6.108 18 C -0.466 4.466 19 H 0.125 0.875 20 C -0.135 4.135 21 N -0.512 5.512 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.176 1.176 26 C -0.111 4.111 27 C -0.139 4.139 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.192 0.808 32 H 0.187 0.813 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.148 0.852 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.615 10.133 -12.049 16.406 hybrid contribution -0.728 1.279 0.473 1.545 sum 3.887 11.411 -11.576 16.713 Atomic orbital electron populations 1.22344 0.76675 1.04911 1.04018 1.45515 1.07513 1.06509 1.54439 1.22730 0.91398 0.92358 1.12860 1.22278 0.96314 0.91234 1.07809 1.70436 1.18001 1.11660 1.19846 1.21492 0.85168 0.88212 1.05281 1.17497 0.94421 0.87185 1.04664 1.20962 0.99072 0.91438 0.98194 1.21163 0.95247 0.95900 1.01067 1.18799 0.92923 0.92156 0.95581 1.17869 1.09416 0.92911 0.93931 1.20733 0.97813 0.93281 0.95924 1.20601 1.07042 0.95828 0.99115 1.20898 0.96445 0.98592 0.92811 1.21245 1.08010 0.94265 1.00502 1.19052 0.92639 0.89967 0.86279 1.83582 1.64035 1.40623 1.22550 1.20788 1.30914 0.99231 0.95669 0.87493 1.24410 0.95275 0.99687 0.94143 1.69637 1.35945 1.37696 1.07950 0.86357 0.80857 0.83257 0.77782 1.19786 1.20773 1.17558 1.21153 1.00365 0.91331 0.98267 1.21271 0.94833 0.97158 1.00611 0.90041 0.89416 0.88636 0.80843 0.81263 0.85126 0.85480 0.86587 0.87189 0.87090 0.84713 0.90952 0.85217 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 9.33 59.85 0.56 1.12 16 2 N -0.46 -5.75 3.19 -121.68 -0.39 -6.14 16 3 C -0.06 -0.67 11.58 -16.48 -0.19 -0.86 16 4 C -0.03 -0.34 11.84 -17.90 -0.21 -0.55 16 5 N -0.48 -7.78 11.01 -11.22 -0.12 -7.91 16 6 C 0.26 4.02 7.58 -154.64 -1.17 2.85 16 7 C -0.04 -0.58 5.86 -104.92 -0.62 -1.20 16 8 C -0.08 -1.22 9.67 -39.26 -0.38 -1.60 16 9 C -0.12 -1.86 9.49 -39.30 -0.37 -2.24 16 10 C 0.01 0.11 5.28 -104.84 -0.55 -0.44 16 11 C -0.14 -2.68 5.48 -104.73 -0.57 -3.25 16 12 C -0.06 -0.97 9.51 -39.26 -0.37 -1.34 16 13 C -0.21 -3.28 10.03 -39.59 -0.40 -3.67 16 14 C -0.07 -1.19 10.03 -39.55 -0.40 -1.59 16 15 C -0.22 -4.56 9.16 -39.44 -0.36 -4.92 16 16 C 0.17 3.84 6.56 -38.72 -0.25 3.58 16 17 O -0.20 -5.10 6.96 0.42 0.00 -5.10 16 18 C -0.39 -10.57 9.94 30.88 0.31 -10.26 16 19 H 0.11 2.96 5.44 -52.48 -0.29 2.67 16 20 C 0.07 1.88 5.49 -17.52 -0.10 1.78 16 21 N -0.88 -24.68 13.96 55.48 0.77 -23.90 16 22 Si 0.89 21.22 28.62 -169.99 -4.86 16.36 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.25 -6.16 7.11 56.52 0.40 -5.76 16 26 C -0.09 -1.68 8.77 -39.30 -0.34 -2.03 16 27 C -0.12 -1.92 8.60 -39.26 -0.34 -2.26 16 28 H 0.08 0.70 7.67 -51.93 -0.40 0.30 16 29 H 0.09 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.10 0.85 6.40 -51.93 -0.33 0.51 16 31 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.13 1.92 7.94 -52.48 -0.42 1.50 16 34 H 0.13 1.78 8.04 -52.49 -0.42 1.36 16 35 H 0.12 1.59 8.04 -52.48 -0.42 1.16 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.14 2.91 5.64 -52.48 -0.30 2.61 16 39 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.13 2.44 7.70 -52.49 -0.40 2.03 16 41 H 0.12 1.66 4.77 -52.49 -0.25 1.41 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -31.56 349.59 -9.57 -41.13 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -4.48 Total: 7.16 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -5.77 Total: -26.87 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.26 Total: -37.95 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.86 Total: 16.36 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.56 -9.57 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242495695.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.944 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds