Wall clock time and date at job start Tue Mar 31 2020 13:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36887 * 126.50118 * 2 1 4 4 C 1.34885 * 107.03564 * 179.97438 * 3 2 1 5 5 N 1.33772 * 108.39483 * 359.76442 * 4 3 2 6 6 C 1.31498 * 109.25569 * 0.39408 * 5 4 3 7 7 C 1.47784 * 125.84464 * 179.87419 * 6 5 4 8 8 C 1.39677 * 120.01322 * 341.06295 * 7 6 5 9 9 C 1.37657 * 119.99004 * 179.97438 * 8 7 6 10 10 C 1.39559 * 120.00910 * 359.97438 * 9 8 7 11 11 C 1.48164 * 119.98331 * 180.02562 * 10 9 8 12 12 C 1.39362 * 120.16755 * 309.72911 * 11 10 9 13 13 C 1.37980 * 119.93821 * 180.24894 * 12 11 10 14 14 C 1.38472 * 120.27964 * 0.02983 * 13 12 11 15 15 C 1.38101 * 120.33752 * 359.97438 * 14 13 12 16 16 C 1.38754 * 120.05695 * 359.97438 * 15 14 13 17 17 O 1.35647 * 120.13993 * 179.97438 * 16 15 14 18 18 C 1.34810 * 117.00336 * 354.40672 * 17 16 15 19 19 H 1.08008 * 119.99701 * 5.04316 * 18 17 16 20 20 C 1.38643 * 120.00513 * 185.04352 * 18 17 16 21 21 N 1.31554 * 120.00153 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99794 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47403 * 89.99937 * 22 20 18 24 24 H 1.48503 * 109.47136 * 210.00232 * 22 20 18 25 25 H 1.48499 * 109.47317 * 329.99827 * 22 20 18 26 26 C 1.39554 * 120.02888 * 0.28664 * 10 9 8 27 27 C 1.37658 * 120.01632 * 359.43549 * 26 10 9 28 28 H 1.09000 * 109.47482 * 264.16788 * 1 2 3 29 29 H 1.09002 * 109.47147 * 24.17060 * 1 2 3 30 30 H 1.08998 * 109.47016 * 144.16116 * 1 2 3 31 31 H 1.08003 * 126.48682 * 359.97438 * 3 2 1 32 32 H 1.08004 * 125.80277 * 179.97438 * 4 3 2 33 33 H 1.08010 * 120.00753 * 359.96056 * 8 7 6 34 34 H 1.08001 * 119.99655 * 180.02562 * 9 8 7 35 35 H 1.08004 * 120.03145 * 0.26015 * 12 11 10 36 36 H 1.08001 * 119.85948 * 180.02562 * 13 12 11 37 37 H 1.08005 * 119.82693 * 180.02562 * 14 13 12 38 38 H 1.08003 * 119.97093 * 180.02562 * 15 14 13 39 39 H 0.97008 * 120.00031 * 180.02562 * 21 20 18 40 40 H 1.08001 * 119.98939 * 179.72706 * 26 10 9 41 41 H 1.07993 * 120.00598 * 180.25558 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2793 1.1004 0.0000 4 6 3.5510 0.6509 0.0006 5 7 3.5260 -0.6866 0.0061 6 6 2.2767 -1.0970 0.0006 7 6 1.8284 -2.5052 0.0013 8 6 2.7086 -3.5188 -0.3844 9 6 2.2907 -4.8304 -0.3830 10 6 0.9879 -5.1475 0.0042 11 6 0.5389 -6.5594 0.0060 12 6 0.7393 -7.3595 -1.1173 13 6 0.3147 -8.6724 -1.1123 14 6 -0.3112 -9.1995 0.0048 15 6 -0.5158 -8.4169 1.1241 16 6 -0.0934 -7.0953 1.1347 17 8 -0.2939 -6.3249 2.2331 18 6 -1.0116 -6.8663 3.2377 19 1 -1.3282 -7.8973 3.1805 20 6 -1.3434 -6.0997 4.3442 21 7 -2.0442 -6.6279 5.3242 22 14 -0.7952 -4.3167 4.4434 23 1 -1.8340 -3.4449 3.8381 24 1 -0.5983 -3.9377 5.8657 25 1 0.4825 -4.1498 3.7053 26 6 0.1064 -4.1347 0.3845 27 6 0.5248 -2.8233 0.3890 28 1 -0.3634 -0.1044 1.0223 29 1 -0.3633 0.9376 -0.4208 30 1 -0.3633 -0.8331 -0.6017 31 1 1.9633 2.1331 -0.0004 32 1 4.4386 1.2662 0.0003 33 1 3.7170 -3.2736 -0.6840 34 1 2.9713 -5.6143 -0.6809 35 1 1.2268 -6.9524 -1.9908 36 1 0.4710 -9.2914 -1.9834 37 1 -0.6403 -10.2282 0.0009 38 1 -1.0042 -8.8342 1.9923 39 1 -2.2766 -6.0913 6.0983 40 1 -0.9030 -4.3804 0.6799 41 1 -0.1563 -2.0401 0.6873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242495695.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:25 Heat of formation + Delta-G solvation = 76.843951 kcal Electronic energy + Delta-G solvation = -25631.423984 eV Core-core repulsion = 22056.574903 eV Total energy + Delta-G solvation = -3574.849081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.98236 -41.15423 -39.67595 -38.13481 -35.16316 -34.51453 -33.99738 -31.97413 -31.27064 -30.71390 -28.84557 -28.01347 -27.23714 -24.70542 -23.99420 -22.84627 -22.30151 -21.84374 -21.11477 -19.78961 -19.11658 -18.38764 -17.42510 -16.77448 -16.61648 -16.35882 -16.20810 -15.94357 -15.55556 -15.44008 -15.25533 -14.94767 -14.54426 -14.42575 -14.31130 -14.10312 -14.08606 -13.99774 -13.61931 -13.45315 -13.11066 -12.86395 -12.59556 -12.43031 -12.29474 -12.00506 -11.90972 -11.27669 -11.03175 -10.93905 -10.73730 -10.50183 -9.95131 -9.65996 -9.14970 -8.66066 -8.52942 -6.22550 -0.27257 0.43090 0.57318 0.70672 1.24112 1.25647 1.28513 1.47283 1.78363 2.13406 2.23053 2.73334 2.84517 3.07455 3.14083 3.29684 3.72581 3.79539 3.89157 3.96242 4.05068 4.19054 4.25806 4.27721 4.39637 4.48637 4.51753 4.55464 4.58103 4.66501 4.72984 4.83520 4.91771 5.06837 5.10370 5.23453 5.37156 5.39246 5.45039 5.55962 5.63356 5.74353 5.80020 5.80970 5.88166 5.96054 6.13508 6.24071 6.82863 7.04843 7.58943 8.58708 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.004581 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.776265 B = 6110.952089 C = 7966.886689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.456 5.456 3 C -0.037 4.037 4 C -0.054 4.054 5 N -0.511 5.511 6 C 0.217 3.783 7 C -0.033 4.033 8 C -0.083 4.083 9 C -0.108 4.108 10 C -0.021 4.021 11 C -0.135 4.135 12 C -0.058 4.058 13 C -0.181 4.181 14 C -0.071 4.071 15 C -0.242 4.242 16 C 0.135 3.865 17 O -0.229 6.229 18 C -0.394 4.394 19 H 0.084 0.916 20 C 0.020 3.980 21 N -0.920 5.920 22 Si 0.950 3.050 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.266 1.266 26 C -0.108 4.108 27 C -0.122 4.122 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.219 0.781 32 H 0.193 0.807 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.110 0.890 39 H 0.284 0.716 40 H 0.112 0.888 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.254 12.255 -15.311 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.138 5.138 3 C -0.171 4.171 4 C -0.203 4.203 5 N -0.230 5.230 6 C -0.041 4.041 7 C -0.035 4.035 8 C -0.103 4.103 9 C -0.126 4.126 10 C -0.022 4.022 11 C -0.137 4.137 12 C -0.075 4.075 13 C -0.199 4.199 14 C -0.089 4.089 15 C -0.261 4.261 16 C 0.085 3.915 17 O -0.136 6.136 18 C -0.470 4.470 19 H 0.101 0.899 20 C -0.179 4.179 21 N -0.561 5.561 22 Si 0.773 3.227 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.191 1.191 26 C -0.127 4.127 27 C -0.141 4.141 28 H 0.104 0.896 29 H 0.142 0.858 30 H 0.111 0.889 31 H 0.235 0.765 32 H 0.210 0.790 33 H 0.158 0.842 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.735 12.048 -15.044 20.109 hybrid contribution -0.952 0.661 1.054 1.567 sum 4.783 12.709 -13.990 19.496 Atomic orbital electron populations 1.22620 0.74721 1.06867 1.04603 1.45770 1.08813 1.06075 1.53096 1.23473 0.90597 0.93671 1.09350 1.22838 0.98311 0.90392 1.08740 1.70338 1.18799 1.13710 1.20182 1.21338 0.85876 0.88567 1.08302 1.17705 0.94266 0.88189 1.03292 1.21139 0.99556 0.91390 0.98195 1.21323 0.94529 0.96628 1.00090 1.18902 0.94061 0.91696 0.97535 1.18222 1.07969 0.93897 0.93570 1.21221 0.97087 0.93341 0.95882 1.21167 1.03465 0.95814 0.99452 1.21259 0.96013 0.99690 0.91929 1.21294 1.08888 0.94556 1.01355 1.19601 0.94409 0.90681 0.86763 1.83548 1.65668 1.41146 1.23245 1.20722 1.31140 0.98479 0.96704 0.89860 1.25070 0.95710 1.03193 0.93946 1.69715 1.38360 1.39137 1.08914 0.85500 0.80010 0.79424 0.77769 1.17997 1.19940 1.19083 1.21135 0.99881 0.92484 0.99153 1.21438 0.95434 0.96850 1.00393 0.89641 0.85791 0.88938 0.76463 0.78978 0.84161 0.83337 0.82933 0.82694 0.84084 0.87179 0.90676 0.87016 0.83993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.79 9.33 127.77 1.19 1.98 16 2 N -0.46 -10.25 3.19 -538.87 -1.72 -11.97 16 3 C -0.04 -0.68 11.58 83.13 0.96 0.28 16 4 C -0.05 -1.25 11.84 83.63 0.99 -0.26 16 5 N -0.51 -15.87 11.01 -189.42 -2.08 -17.95 16 6 C 0.22 6.51 7.58 136.49 1.03 7.54 16 7 C -0.03 -1.04 5.86 -20.06 -0.12 -1.15 16 8 C -0.08 -2.56 9.67 22.48 0.22 -2.34 16 9 C -0.11 -3.34 9.49 22.45 0.21 -3.13 16 10 C -0.02 -0.77 5.28 -20.00 -0.11 -0.87 16 11 C -0.14 -5.13 5.48 -19.94 -0.11 -5.24 16 12 C -0.06 -1.70 9.51 22.48 0.21 -1.49 16 13 C -0.18 -4.99 10.03 22.26 0.22 -4.76 16 14 C -0.07 -2.31 10.03 22.29 0.22 -2.09 16 15 C -0.24 -10.32 9.16 22.36 0.20 -10.11 16 16 C 0.14 6.19 6.56 22.83 0.15 6.34 16 17 O -0.23 -12.13 6.96 -21.40 -0.15 -12.28 16 18 C -0.39 -22.81 9.94 67.92 0.68 -22.13 16 19 H 0.08 5.04 5.44 -2.91 -0.02 5.02 16 20 C 0.02 1.13 5.49 84.83 0.47 1.59 16 21 N -0.92 -54.67 13.96 21.61 0.30 -54.36 16 22 Si 0.95 45.57 28.62 68.60 1.96 47.53 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 26 C -0.11 -3.99 8.77 22.45 0.20 -3.79 16 27 C -0.12 -3.89 8.60 22.48 0.19 -3.70 16 28 H 0.09 1.24 7.67 -2.39 -0.02 1.22 16 29 H 0.12 0.95 8.13 -2.39 -0.02 0.93 16 30 H 0.09 1.45 6.40 -2.39 -0.02 1.44 16 31 H 0.22 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.14 3.98 7.94 -2.91 -0.02 3.96 16 34 H 0.15 3.82 8.04 -2.91 -0.02 3.80 16 35 H 0.15 3.44 8.04 -2.91 -0.02 3.42 16 36 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 38 H 0.11 5.17 5.64 -2.91 -0.02 5.15 16 39 H 0.28 15.54 8.31 -92.70 -0.77 14.77 16 40 H 0.11 4.43 7.70 -2.91 -0.02 4.40 16 41 H 0.14 3.77 4.77 -2.91 -0.01 3.76 16 Total: -1.00 -74.00 349.59 6.20 -67.80 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 1.07 Total: 24.56 kcal Atomic # 6 Polarization: -50.15 SS G_CDS: 6.82 Total: -43.33 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -3.50 Total: -84.28 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.15 Total: -12.28 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.96 Total: 47.53 kcal Total: -74.00 6.20 -67.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242495695.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.639 kcal (2) G-P(sol) polarization free energy of solvation -73.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds