Wall clock time and date at job start Tue Mar 31 2020 12:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46886 * 2 1 4 4 C 1.35911 * 116.99906 * 180.02562 * 3 2 1 5 5 C 1.38877 * 120.40359 * 359.97438 * 4 3 2 6 6 N 1.31876 * 120.99802 * 179.97438 * 5 4 3 7 7 C 1.31687 * 121.93530 * 359.77491 * 6 5 4 8 8 C 1.39560 * 120.68759 * 0.48834 * 7 6 5 9 9 C 1.47966 * 120.52929 * 179.77446 * 8 7 6 10 10 N 1.31555 * 119.44092 * 136.34624 * 9 8 7 11 11 C 1.33652 * 121.74814 * 180.28550 * 10 9 8 12 12 C 1.40476 * 120.98922 * 179.76033 * 11 10 9 13 13 C 1.36252 * 119.70248 * 179.73002 * 12 11 10 14 14 C 1.39155 * 121.75875 * 359.97438 * 13 12 11 15 15 C 1.36133 * 121.46274 * 0.04101 * 14 13 12 16 16 C 1.40776 * 119.47033 * 359.95837 * 15 14 13 17 17 C 1.40018 * 121.40749 * 180.02562 * 16 15 14 18 18 C 1.40385 * 117.96299 * 179.97438 * 17 16 15 19 19 C 1.40854 * 120.41036 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99511 * 151.96185 * 19 18 17 21 21 C 1.40089 * 120.00040 * 331.95588 * 19 18 17 22 22 N 1.30762 * 120.00123 * 346.33804 * 21 19 18 23 23 Si 1.86799 * 119.99780 * 166.33263 * 21 19 18 24 24 H 1.48498 * 109.47317 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47147 * 120.00474 * 23 21 19 26 26 H 1.48500 * 109.47266 * 239.99909 * 23 21 19 27 27 C 1.38831 * 120.40221 * 180.02562 * 4 3 2 28 28 H 1.09006 * 109.47010 * 299.99615 * 1 2 3 29 29 H 1.08994 * 109.47605 * 60.00246 * 1 2 3 30 30 H 1.09007 * 109.47109 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46908 * 240.00394 * 2 1 3 32 32 H 1.08996 * 109.46872 * 119.99686 * 2 1 3 33 33 H 1.07998 * 119.49829 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.65634 * 180.24642 * 7 6 5 35 35 H 1.07996 * 120.15077 * 359.75614 * 12 11 10 36 36 H 1.08003 * 119.12228 * 180.02562 * 13 12 11 37 37 H 1.08000 * 119.26844 * 180.02562 * 14 13 12 38 38 H 1.08008 * 120.26240 * 179.97438 * 15 14 13 39 39 H 1.08005 * 121.01702 * 359.97438 * 17 16 15 40 40 H 0.97003 * 120.00175 * 180.02562 * 22 21 19 41 41 H 1.07994 * 120.87424 * 359.95399 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.2075 0.4301 -0.0005 6 7 5.5166 0.5893 -0.0016 7 6 6.0731 1.7828 -0.0070 8 6 5.2864 2.9355 -0.0018 9 6 5.9155 4.2748 -0.0029 10 7 5.4364 5.2136 -0.7902 11 6 5.9722 6.4372 -0.8324 12 6 5.4508 7.4263 -1.6829 13 6 6.0141 8.6668 -1.7007 14 6 7.1011 8.9893 -0.8941 15 6 7.6537 8.0769 -0.0482 16 6 7.1162 6.7774 0.0159 17 6 7.6522 5.8074 0.8716 18 6 7.0593 4.5349 0.8777 19 6 7.5574 3.5203 1.7182 20 1 6.8986 2.7420 2.0739 21 6 8.9074 3.5207 2.0925 22 7 9.7598 4.2880 1.4644 23 14 9.4896 2.4252 3.4891 24 1 8.3381 1.6600 4.0311 25 1 10.5167 1.4802 2.9818 26 1 10.0771 3.2642 4.5643 27 6 3.8933 2.8046 0.0000 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7930 -0.5672 -0.0005 34 1 7.1495 1.8705 -0.0117 35 1 4.6071 7.2045 -2.3194 36 1 5.6055 9.4202 -2.3579 37 1 7.5158 9.9854 -0.9403 38 1 8.4975 8.3480 0.5690 39 1 8.4960 6.0313 1.5075 40 1 10.6946 4.2880 1.7234 41 1 3.2547 3.6754 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242658474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:34 Heat of formation + Delta-G solvation = 31.877693 kcal Electronic energy + Delta-G solvation = -25459.117175 eV Core-core repulsion = 21882.318211 eV Total energy + Delta-G solvation = -3576.798964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.25038 -39.03603 -37.91045 -36.03828 -34.33012 -32.45583 -31.81298 -31.74176 -29.99124 -29.18318 -28.40128 -25.78888 -24.64082 -22.98757 -22.88094 -21.85594 -21.06425 -20.49433 -18.29774 -17.82008 -16.68586 -16.30136 -16.12717 -16.07342 -15.83004 -15.21523 -14.81870 -13.86624 -13.76989 -13.60413 -13.41317 -13.05982 -12.95501 -12.81054 -12.69087 -12.53930 -12.36893 -12.14705 -11.90553 -11.65523 -11.50641 -11.38064 -11.13113 -10.91989 -10.86179 -10.73799 -10.53912 -10.04027 -9.65547 -9.15194 -9.08501 -9.02729 -8.41905 -8.06312 -7.46177 -7.22097 -7.07526 -4.65849 1.13597 1.75505 1.80151 2.05002 2.84157 2.93024 2.98999 3.22348 3.37268 3.69095 3.77962 4.30526 4.57418 4.76509 4.81350 4.87990 5.02644 5.13793 5.22312 5.37010 5.42433 5.54636 5.58871 5.61269 5.64546 5.65170 5.79599 5.89810 5.99295 6.16685 6.19807 6.32092 6.34797 6.50126 6.73207 6.76622 6.79974 6.94690 7.01070 7.18128 7.29155 7.32362 7.50934 7.59489 7.65920 7.82317 8.17543 8.36234 8.40870 8.44565 9.10525 9.79466 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009245 B = 0.004931 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.074402 B = 5677.268314 C = 8377.307871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.314 6.314 4 C 0.067 3.933 5 C 0.000 4.000 6 N -0.457 5.457 7 C 0.096 3.904 8 C -0.006 4.006 9 C 0.107 3.893 10 N -0.451 5.451 11 C 0.026 3.974 12 C -0.058 4.058 13 C -0.177 4.177 14 C -0.116 4.116 15 C -0.129 4.129 16 C -0.044 4.044 17 C -0.166 4.166 18 C 0.080 3.920 19 C -0.428 4.428 20 H 0.091 0.909 21 C 0.073 3.927 22 N -0.770 5.770 23 Si 0.913 3.087 24 H -0.256 1.256 25 H -0.268 1.268 26 H -0.269 1.269 27 C -0.092 4.092 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.148 0.852 34 H 0.172 0.828 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.289 0.711 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.664 -4.014 -0.420 8.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.228 6.228 4 C 0.021 3.979 5 C -0.157 4.157 6 N -0.165 5.165 7 C -0.064 4.064 8 C -0.009 4.009 9 C -0.048 4.048 10 N -0.157 5.157 11 C -0.097 4.097 12 C -0.077 4.077 13 C -0.198 4.198 14 C -0.134 4.134 15 C -0.148 4.148 16 C -0.046 4.046 17 C -0.191 4.191 18 C 0.075 3.925 19 C -0.456 4.456 20 H 0.109 0.891 21 C -0.148 4.148 22 N -0.392 5.392 23 Si 0.736 3.264 24 H -0.179 1.179 25 H -0.193 1.193 26 H -0.194 1.194 27 C -0.119 4.119 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.166 0.834 34 H 0.189 0.811 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.151 0.849 40 H 0.100 0.900 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.771 -4.626 -1.016 9.101 hybrid contribution 0.647 0.363 1.090 1.319 sum -7.124 -4.264 0.074 8.303 Atomic orbital electron populations 1.21763 0.92924 1.02613 1.03499 1.22748 0.95753 0.82376 1.01392 1.86054 1.18753 1.28809 1.89156 1.19851 0.83060 0.95052 0.99967 1.22756 0.89882 0.97570 1.05519 1.67541 1.11535 1.26621 1.10853 1.23121 1.01359 0.85718 0.96200 1.19307 0.91626 0.93428 0.96562 1.20770 0.97072 0.90681 0.96291 1.67347 1.28433 1.00369 1.19599 1.19268 0.97185 0.91562 1.01721 1.20507 0.98345 0.92067 0.96772 1.20280 0.99630 0.96718 1.03140 1.20497 0.97021 0.98546 0.97361 1.20869 1.00299 0.93241 1.00387 1.19713 0.94626 0.94228 0.96074 1.21515 1.03867 0.91103 1.02643 1.19147 0.89661 0.93188 0.90467 1.19710 0.94295 1.08693 1.22876 0.89115 1.26024 0.96595 0.95799 0.96429 1.69755 1.04720 1.31254 1.33498 0.86142 0.79819 0.80034 0.80418 1.17900 1.19340 1.19356 1.20997 0.94420 0.95053 1.01444 0.91568 0.91563 0.90535 0.92074 0.92052 0.83438 0.81083 0.86856 0.87617 0.87759 0.86986 0.84861 0.90014 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.56 5.47 37.16 0.20 0.76 16 3 O -0.31 -4.71 10.15 -19.46 -0.20 -4.91 16 4 C 0.07 1.15 6.70 -39.13 -0.26 0.89 16 5 C 0.00 0.00 10.21 -17.30 -0.18 -0.18 16 6 N -0.46 -8.66 10.34 -12.78 -0.13 -8.79 16 7 C 0.10 1.95 9.03 -17.12 -0.15 1.79 16 8 C -0.01 -0.13 5.27 -104.79 -0.55 -0.68 16 9 C 0.11 2.51 6.57 -80.59 -0.53 1.98 16 10 N -0.45 -10.69 10.07 -4.83 -0.05 -10.74 16 11 C 0.03 0.61 6.74 -82.94 -0.56 0.05 16 12 C -0.06 -1.17 9.98 -39.45 -0.39 -1.56 16 13 C -0.18 -3.18 9.90 -39.96 -0.40 -3.57 16 14 C -0.12 -2.09 9.91 -40.00 -0.40 -2.48 16 15 C -0.13 -2.61 9.80 -39.38 -0.39 -2.99 16 16 C -0.04 -1.02 5.87 -104.98 -0.62 -1.64 16 17 C -0.17 -4.04 8.52 -38.11 -0.32 -4.37 16 18 C 0.08 1.96 5.67 -104.69 -0.59 1.37 16 19 C -0.43 -9.97 6.79 -37.90 -0.26 -10.22 16 20 H 0.09 2.08 6.50 -52.49 -0.34 1.73 16 21 C 0.07 1.62 5.21 -17.31 -0.09 1.53 16 22 N -0.77 -17.68 10.97 55.56 0.61 -17.07 16 23 Si 0.91 16.97 29.58 -169.99 -5.03 11.94 16 24 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 25 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 26 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 27 C -0.09 -1.77 9.75 -38.73 -0.38 -2.15 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 32 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 33 H 0.15 1.93 6.30 -52.49 -0.33 1.60 16 34 H 0.17 3.59 6.78 -52.49 -0.36 3.23 16 35 H 0.11 2.07 8.06 -52.49 -0.42 1.64 16 36 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.11 2.07 8.06 -52.48 -0.42 1.64 16 39 H 0.13 3.28 6.35 -52.48 -0.33 2.95 16 40 H 0.29 5.99 8.29 -40.82 -0.34 5.66 16 41 H 0.14 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -26.84 348.40 -9.70 -36.54 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -4.67 Total: 10.13 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -5.48 Total: -22.34 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.43 Total: -36.60 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.20 Total: -4.91 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.84 -9.70 -36.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242658474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.422 kcal (2) G-P(sol) polarization free energy of solvation -26.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds