Wall clock time and date at job start Tue Mar 31 2020 13:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35602 * 116.99807 * 2 1 4 4 C 1.38523 * 120.08306 * 0.02562 * 3 2 1 5 5 C 1.38017 * 120.31484 * 180.27170 * 4 3 2 6 6 C 1.39973 * 120.46688 * 359.49187 * 5 4 3 7 7 C 1.48292 * 119.92857 * 180.23210 * 6 5 4 8 8 C 1.39298 * 120.15902 * 124.68865 * 7 6 5 9 9 C 1.38010 * 119.94386 * 179.70456 * 8 7 6 10 10 C 1.38409 * 120.25917 * 0.59900 * 9 8 7 11 11 C 1.38162 * 120.31606 * 359.68049 * 10 9 8 12 12 C 1.38681 * 120.05588 * 0.02562 * 11 10 9 13 13 N 1.40022 * 120.13202 * 179.97438 * 12 11 10 14 14 C 1.35248 * 126.05124 * 313.13919 * 13 12 11 15 15 C 1.35330 * 107.70563 * 179.84103 * 14 13 12 16 16 C 1.39924 * 107.93352 * 0.42331 * 15 14 13 17 17 N 1.30888 * 108.24558 * 359.74030 * 16 15 14 18 18 C 1.38647 * 120.15084 * 0.50956 * 6 5 4 19 19 C 1.40522 * 119.68576 * 359.74410 * 18 6 5 20 20 C 1.41184 * 120.22859 * 180.02562 * 19 18 6 21 21 H 1.07997 * 119.99901 * 151.91527 * 20 19 18 22 22 C 1.39905 * 119.99700 * 331.91553 * 20 19 18 23 23 N 1.30877 * 120.00394 * 348.23087 * 22 20 19 24 24 Si 1.86806 * 119.99745 * 168.23603 * 22 20 19 25 25 H 1.48500 * 109.46873 * 89.99701 * 24 22 20 26 26 H 1.48495 * 109.47043 * 209.99480 * 24 22 20 27 27 H 1.48493 * 109.47022 * 330.00011 * 24 22 20 28 28 H 1.09001 * 109.47102 * 59.99839 * 1 2 3 29 29 H 1.09004 * 109.46823 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47137 * 299.99629 * 1 2 3 31 31 H 1.08003 * 119.84449 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.77066 * 179.74387 * 5 4 3 33 33 H 1.08009 * 120.02557 * 0.02562 * 8 7 6 34 34 H 1.07994 * 119.87352 * 180.30054 * 9 8 7 35 35 H 1.07992 * 119.83827 * 179.70153 * 10 9 8 36 36 H 1.08002 * 119.96991 * 180.02562 * 11 10 9 37 37 H 1.07994 * 126.14703 * 359.97438 * 14 13 12 38 38 H 1.07996 * 126.02826 * 180.19701 * 15 14 13 39 39 H 1.08000 * 125.87656 * 179.71400 * 16 15 14 40 40 H 1.07999 * 120.15830 * 179.73032 * 18 6 5 41 41 H 0.97002 * 120.00150 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2918 2.3711 0.0005 5 6 1.9133 3.6033 -0.0051 6 6 3.3101 3.6937 -0.0007 7 6 3.9655 5.0240 -0.0017 8 6 4.8864 5.3512 0.9909 9 6 5.4982 6.5882 0.9823 10 6 5.1914 7.5112 -0.0024 11 6 4.2753 7.2002 -0.9888 12 6 3.6572 5.9587 -0.9962 13 7 2.7281 5.6420 -1.9947 14 6 1.7095 6.4277 -2.4123 15 6 1.0504 5.7624 -3.3892 16 6 1.6801 4.5259 -3.5689 17 7 2.6854 4.4528 -2.7338 18 6 4.0825 2.5423 -0.0013 19 6 3.4563 1.2843 -0.0009 20 6 4.2317 0.1044 -0.0010 21 1 3.8388 -0.7999 0.4397 22 6 5.5090 0.1068 -0.5718 23 7 5.8966 1.1199 -1.3041 24 14 6.6611 -1.3362 -0.2889 25 1 6.4572 -2.3488 -1.3558 26 1 8.0674 -0.8603 -0.3205 27 1 6.3745 -1.9464 1.0341 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 0.2133 2.3131 0.0014 32 1 1.3178 4.5043 -0.0088 33 1 5.1252 4.6354 1.7637 34 1 6.2156 6.8389 1.7496 35 1 5.6706 8.4790 0.0001 36 1 4.0403 7.9245 -1.7547 37 1 1.4671 7.4103 -2.0354 38 1 0.1881 6.1210 -3.9316 39 1 1.3869 3.7629 -4.2748 40 1 5.1602 2.6119 -0.0024 41 1 6.7821 1.1214 -1.7001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242711360.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:22 Heat of formation + Delta-G solvation = 98.564207 kcal Electronic energy + Delta-G solvation = -26463.571530 eV Core-core repulsion = 22889.664310 eV Total energy + Delta-G solvation = -3573.907220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.02566 -38.94244 -38.33608 -35.99988 -33.68509 -33.02509 -31.44616 -29.79129 -29.66208 -28.85046 -27.59974 -26.40383 -25.07397 -23.08041 -22.61009 -20.99174 -20.56232 -20.26289 -19.65299 -17.80235 -17.24814 -16.49778 -15.80603 -15.38651 -15.03725 -14.73926 -14.62773 -14.40980 -14.10216 -13.77088 -13.46595 -13.20814 -13.05476 -12.72702 -12.65678 -12.40754 -12.08681 -11.94546 -11.64396 -11.34811 -11.14783 -11.09885 -10.84220 -10.73068 -10.42185 -10.18985 -9.90012 -9.86135 -9.50209 -9.40360 -9.13954 -8.69766 -8.55259 -7.88837 -7.39514 -6.78931 -6.54589 -4.18426 1.26838 1.53485 2.45943 2.81418 2.92006 2.96067 3.14401 3.18970 3.23946 3.27605 3.99293 4.04166 4.52691 4.68977 5.00493 5.04465 5.14753 5.25257 5.29593 5.56051 5.61444 5.70714 5.77937 5.81086 5.85455 5.97948 6.02804 6.04060 6.16972 6.22158 6.28765 6.33091 6.51271 6.65181 6.75582 6.89704 6.99222 7.08884 7.17379 7.34644 7.39918 7.63265 7.71190 7.78241 8.01417 8.17976 8.23339 8.43583 8.75591 8.93181 9.11246 10.34726 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.005523 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.593418 B = 5068.353230 C = 6382.029946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.025 3.975 4 C -0.179 4.179 5 C -0.168 4.168 6 C -0.068 4.068 7 C 0.011 3.989 8 C -0.102 4.102 9 C -0.116 4.116 10 C -0.123 4.123 11 C -0.123 4.123 12 C 0.142 3.858 13 N -0.313 5.313 14 C 0.042 3.958 15 C -0.270 4.270 16 C 0.031 3.969 17 N -0.232 5.232 18 C -0.105 4.105 19 C 0.095 3.905 20 C -0.448 4.448 21 H 0.079 0.921 22 C 0.071 3.929 23 N -0.799 5.799 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.262 1.262 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.179 0.821 40 H 0.128 0.872 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 10.501 0.420 11.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.225 6.225 3 C -0.020 4.020 4 C -0.198 4.198 5 C -0.187 4.187 6 C -0.069 4.069 7 C 0.009 3.991 8 C -0.120 4.120 9 C -0.135 4.135 10 C -0.142 4.142 11 C -0.144 4.144 12 C 0.051 3.949 13 N -0.090 5.090 14 C -0.102 4.102 15 C -0.299 4.299 16 C -0.157 4.157 17 N -0.050 5.050 18 C -0.124 4.124 19 C 0.092 3.908 20 C -0.478 4.478 21 H 0.098 0.902 22 C -0.145 4.145 23 N -0.426 5.426 24 Si 0.733 3.267 25 H -0.197 1.197 26 H -0.203 1.203 27 H -0.186 1.186 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.184 0.816 38 H 0.161 0.839 39 H 0.196 0.804 40 H 0.146 0.854 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.961 9.688 0.755 10.159 hybrid contribution -0.596 0.128 -0.482 0.777 sum -3.557 9.816 0.273 10.444 Atomic orbital electron populations 1.22725 0.81828 1.01659 0.99870 1.85962 1.18145 1.28379 1.90061 1.19336 0.92408 0.82455 1.07768 1.20430 0.97149 0.92700 1.09568 1.19879 0.92535 0.94878 1.11448 1.18135 0.92679 0.90076 1.06006 1.19079 0.94830 0.93789 0.91354 1.21278 0.95836 0.96592 0.98301 1.21128 0.99747 0.93768 0.98820 1.20840 0.98447 0.99750 0.95167 1.20854 0.97756 0.95601 1.00181 1.17456 0.93993 0.94758 0.88713 1.45673 1.22048 1.13059 1.28181 1.22489 0.91213 0.98106 0.98365 1.21409 1.06179 0.97099 1.05207 1.23977 0.94869 0.97762 0.99100 1.77996 1.20741 1.00347 1.05879 1.21124 0.99231 0.89264 1.02814 1.16919 0.87170 0.93848 0.92819 1.19337 0.98360 0.97003 1.33088 0.90243 1.25847 0.98392 0.97101 0.93122 1.69833 1.19390 1.29984 1.23387 0.86315 0.79014 0.81509 0.79866 1.19653 1.20326 1.18631 0.94188 0.90064 0.94327 0.88811 0.90208 0.85022 0.85812 0.85750 0.85928 0.81629 0.83894 0.80428 0.85397 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.81 101.05 0.99 1.61 16 2 O -0.31 -7.40 9.80 -18.50 -0.18 -7.58 16 3 C 0.02 0.63 6.72 -38.28 -0.26 0.37 16 4 C -0.18 -4.17 9.01 -39.56 -0.36 -4.53 16 5 C -0.17 -3.86 8.07 -39.01 -0.31 -4.17 16 6 C -0.07 -1.60 4.32 -104.96 -0.45 -2.06 16 7 C 0.01 0.23 5.41 -104.74 -0.57 -0.34 16 8 C -0.10 -1.76 9.60 -39.27 -0.38 -2.13 16 9 C -0.12 -1.61 10.03 -39.60 -0.40 -2.01 16 10 C -0.12 -1.60 10.03 -39.55 -0.40 -2.00 16 11 C -0.12 -1.82 9.62 -39.45 -0.38 -2.20 16 12 C 0.14 2.62 6.20 -83.32 -0.52 2.10 16 13 N -0.31 -5.87 2.75 -10.51 -0.03 -5.89 16 14 C 0.04 0.63 11.11 -17.08 -0.19 0.44 16 15 C -0.27 -3.96 10.81 -39.99 -0.43 -4.40 16 16 C 0.03 0.54 12.03 -17.32 -0.21 0.33 16 17 N -0.23 -4.96 10.54 30.64 0.32 -4.63 16 18 C -0.10 -2.73 8.19 -38.57 -0.32 -3.04 16 19 C 0.10 2.60 5.56 -106.72 -0.59 2.01 16 20 C -0.45 -12.32 8.69 -37.84 -0.33 -12.64 16 21 H 0.08 2.17 7.67 -52.49 -0.40 1.77 16 22 C 0.07 1.85 5.24 -17.33 -0.09 1.76 16 23 N -0.80 -21.38 10.85 55.55 0.60 -20.78 16 24 Si 0.91 19.49 29.58 -169.99 -5.03 14.46 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 27 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 28 H 0.04 0.67 7.66 -51.93 -0.40 0.27 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 31 H 0.09 1.94 6.27 -52.48 -0.33 1.61 16 32 H 0.08 1.76 7.96 -52.48 -0.42 1.35 16 33 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.51 8.02 -52.49 -0.42 1.09 16 37 H 0.17 1.88 8.06 -52.49 -0.42 1.45 16 38 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.18 2.66 8.06 -52.49 -0.42 2.24 16 40 H 0.13 3.47 6.20 -52.49 -0.33 3.15 16 41 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -31.86 351.48 -8.98 -40.84 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -4.78 Total: 9.18 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -5.18 Total: -30.90 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.90 Total: -31.31 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.18 Total: -7.58 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.86 -8.98 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242711360.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.408 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds