Wall clock time and date at job start Tue Mar 31 2020 13:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35602 * 116.99807 * 2 1 4 4 C 1.38523 * 120.08306 * 0.02562 * 3 2 1 5 5 C 1.38017 * 120.31484 * 180.27170 * 4 3 2 6 6 C 1.39973 * 120.46688 * 359.49187 * 5 4 3 7 7 C 1.48292 * 119.92857 * 180.23210 * 6 5 4 8 8 C 1.39298 * 120.15902 * 124.68865 * 7 6 5 9 9 C 1.38010 * 119.94386 * 179.70456 * 8 7 6 10 10 C 1.38409 * 120.25917 * 0.59900 * 9 8 7 11 11 C 1.38162 * 120.31606 * 359.68049 * 10 9 8 12 12 C 1.38681 * 120.05588 * 0.02562 * 11 10 9 13 13 N 1.40022 * 120.13202 * 179.97438 * 12 11 10 14 14 C 1.35248 * 126.05124 * 313.13919 * 13 12 11 15 15 C 1.35330 * 107.70563 * 179.84103 * 14 13 12 16 16 C 1.39924 * 107.93352 * 0.42331 * 15 14 13 17 17 N 1.30888 * 108.24558 * 359.74030 * 16 15 14 18 18 C 1.38647 * 120.15084 * 0.50956 * 6 5 4 19 19 C 1.40522 * 119.68576 * 359.74410 * 18 6 5 20 20 C 1.41184 * 120.22859 * 180.02562 * 19 18 6 21 21 H 1.07997 * 119.99901 * 151.91527 * 20 19 18 22 22 C 1.39905 * 119.99700 * 331.91553 * 20 19 18 23 23 N 1.30877 * 120.00394 * 348.23087 * 22 20 19 24 24 Si 1.86806 * 119.99745 * 168.23603 * 22 20 19 25 25 H 1.48500 * 109.46873 * 89.99701 * 24 22 20 26 26 H 1.48495 * 109.47043 * 209.99480 * 24 22 20 27 27 H 1.48493 * 109.47022 * 330.00011 * 24 22 20 28 28 H 1.09001 * 109.47102 * 59.99839 * 1 2 3 29 29 H 1.09004 * 109.46823 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47137 * 299.99629 * 1 2 3 31 31 H 1.08003 * 119.84449 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.77066 * 179.74387 * 5 4 3 33 33 H 1.08009 * 120.02557 * 0.02562 * 8 7 6 34 34 H 1.07994 * 119.87352 * 180.30054 * 9 8 7 35 35 H 1.07992 * 119.83827 * 179.70153 * 10 9 8 36 36 H 1.08002 * 119.96991 * 180.02562 * 11 10 9 37 37 H 1.07994 * 126.14703 * 359.97438 * 14 13 12 38 38 H 1.07996 * 126.02826 * 180.19701 * 15 14 13 39 39 H 1.08000 * 125.87656 * 179.71400 * 16 15 14 40 40 H 1.07999 * 120.15830 * 179.73032 * 18 6 5 41 41 H 0.97002 * 120.00150 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2918 2.3711 0.0005 5 6 1.9133 3.6033 -0.0051 6 6 3.3101 3.6937 -0.0007 7 6 3.9655 5.0240 -0.0017 8 6 4.8864 5.3512 0.9909 9 6 5.4982 6.5882 0.9823 10 6 5.1914 7.5112 -0.0024 11 6 4.2753 7.2002 -0.9888 12 6 3.6572 5.9587 -0.9962 13 7 2.7281 5.6420 -1.9947 14 6 1.7095 6.4277 -2.4123 15 6 1.0504 5.7624 -3.3892 16 6 1.6801 4.5259 -3.5689 17 7 2.6854 4.4528 -2.7338 18 6 4.0825 2.5423 -0.0013 19 6 3.4563 1.2843 -0.0009 20 6 4.2317 0.1044 -0.0010 21 1 3.8388 -0.7999 0.4397 22 6 5.5090 0.1068 -0.5718 23 7 5.8966 1.1199 -1.3041 24 14 6.6611 -1.3362 -0.2889 25 1 6.4572 -2.3488 -1.3558 26 1 8.0674 -0.8603 -0.3205 27 1 6.3745 -1.9464 1.0341 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 0.2133 2.3131 0.0014 32 1 1.3178 4.5043 -0.0088 33 1 5.1252 4.6354 1.7637 34 1 6.2156 6.8389 1.7496 35 1 5.6706 8.4790 0.0001 36 1 4.0403 7.9245 -1.7547 37 1 1.4671 7.4103 -2.0354 38 1 0.1881 6.1210 -3.9316 39 1 1.3869 3.7629 -4.2748 40 1 5.1602 2.6119 -0.0024 41 1 6.7821 1.1214 -1.7001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242711360.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:22 Heat of formation + Delta-G solvation = 81.798344 kcal Electronic energy + Delta-G solvation = -26464.298552 eV Core-core repulsion = 22889.664310 eV Total energy + Delta-G solvation = -3574.634242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.29792 -40.53697 -39.80710 -37.74838 -35.56263 -34.30036 -32.92511 -31.65218 -30.95015 -30.17447 -29.12209 -28.00012 -26.96632 -24.35052 -23.98835 -22.83292 -22.01238 -21.51475 -21.15179 -19.36618 -18.76951 -18.30636 -17.35136 -16.85272 -16.57051 -16.29765 -16.10865 -15.94601 -15.40221 -15.21452 -14.77037 -14.73790 -14.50147 -14.38111 -14.20765 -13.67618 -13.52949 -13.39098 -13.29439 -12.96219 -12.82534 -12.59047 -12.45518 -12.28471 -12.11255 -11.67637 -11.59654 -11.40797 -11.29936 -11.07127 -10.76409 -9.95284 -9.86895 -9.33888 -9.18037 -8.62545 -8.41589 -6.22460 0.02021 0.27308 0.97785 1.09642 1.27365 1.35929 1.47579 1.51717 1.70777 2.02896 2.23629 2.68952 2.82398 2.89938 3.64502 3.82953 3.87133 4.02550 4.10773 4.16936 4.29819 4.37457 4.43217 4.44061 4.49479 4.51479 4.62501 4.69441 4.84306 4.88540 4.97128 5.05214 5.14053 5.20318 5.31513 5.37202 5.43790 5.51251 5.58354 5.77872 5.81141 5.85124 5.95235 6.12402 6.30444 6.44676 6.50713 6.80783 6.90207 6.95090 7.22063 8.42927 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.005523 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.593418 B = 5068.353230 C = 6382.029946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.339 6.339 3 C 0.010 3.990 4 C -0.181 4.181 5 C -0.161 4.161 6 C -0.058 4.058 7 C -0.037 4.037 8 C -0.117 4.117 9 C -0.108 4.108 10 C -0.102 4.102 11 C -0.119 4.119 12 C 0.122 3.878 13 N -0.324 5.324 14 C 0.045 3.955 15 C -0.264 4.264 16 C 0.020 3.980 17 N -0.307 5.307 18 C -0.124 4.124 19 C 0.058 3.942 20 C -0.485 4.485 21 H 0.067 0.933 22 C 0.031 3.969 23 N -0.833 5.833 24 Si 0.980 3.020 25 H -0.267 1.267 26 H -0.265 1.265 27 H -0.259 1.259 28 H 0.046 0.954 29 H 0.113 0.887 30 H 0.052 0.948 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.160 0.840 35 H 0.173 0.827 36 H 0.153 0.847 37 H 0.207 0.793 38 H 0.179 0.821 39 H 0.189 0.811 40 H 0.106 0.894 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 13.484 0.414 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.254 6.254 3 C -0.035 4.035 4 C -0.200 4.200 5 C -0.181 4.181 6 C -0.058 4.058 7 C -0.039 4.039 8 C -0.136 4.136 9 C -0.126 4.126 10 C -0.121 4.121 11 C -0.139 4.139 12 C 0.031 3.969 13 N -0.101 5.101 14 C -0.098 4.098 15 C -0.293 4.293 16 C -0.167 4.167 17 N -0.125 5.125 18 C -0.144 4.144 19 C 0.056 3.944 20 C -0.515 4.515 21 H 0.085 0.915 22 C -0.181 4.181 23 N -0.460 5.460 24 Si 0.801 3.199 25 H -0.192 1.192 26 H -0.189 1.189 27 H -0.183 1.183 28 H 0.065 0.935 29 H 0.131 0.869 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.109 0.891 33 H 0.138 0.862 34 H 0.178 0.822 35 H 0.190 0.810 36 H 0.170 0.830 37 H 0.224 0.776 38 H 0.196 0.804 39 H 0.206 0.794 40 H 0.124 0.876 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.359 12.681 0.749 13.140 hybrid contribution -0.613 -0.597 -0.491 0.987 sum -3.973 12.084 0.258 12.723 Atomic orbital electron populations 1.23067 0.78715 1.04182 1.00752 1.85901 1.21437 1.27937 1.90113 1.19447 0.92257 0.83721 1.08052 1.20702 0.98404 0.92132 1.08749 1.20068 0.92675 0.95109 1.10233 1.18374 0.92888 0.91263 1.03294 1.19109 0.97446 0.93153 0.94214 1.21350 0.96090 0.98297 0.97842 1.21521 0.99195 0.92104 0.99783 1.21419 0.96546 1.01026 0.93070 1.21249 0.97070 0.94453 1.01152 1.17794 0.94915 0.95755 0.88396 1.45774 1.23121 1.12918 1.28282 1.23240 0.89677 0.99157 0.97694 1.21805 1.06750 0.95614 1.05127 1.24402 0.94417 0.99319 0.98549 1.77923 1.23317 1.02979 1.08323 1.20975 0.98403 0.90192 1.04854 1.17335 0.88691 0.94481 0.93940 1.19450 1.00044 0.96886 1.35132 0.91517 1.26660 0.99337 0.99950 0.92199 1.69932 1.19924 1.31927 1.24267 0.85241 0.77089 0.77850 0.79701 1.19155 1.18903 1.18330 0.93519 0.86872 0.92976 0.86227 0.89135 0.86192 0.82232 0.80996 0.82981 0.77580 0.80367 0.79374 0.87611 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.81 113.37 1.11 2.08 16 2 O -0.34 -16.71 9.80 -89.12 -0.87 -17.58 16 3 C 0.01 0.53 6.72 23.11 0.16 0.68 16 4 C -0.18 -8.62 9.01 22.29 0.20 -8.42 16 5 C -0.16 -7.63 8.07 22.64 0.18 -7.44 16 6 C -0.06 -2.84 4.32 -20.08 -0.09 -2.93 16 7 C -0.04 -1.55 5.41 -19.94 -0.11 -1.66 16 8 C -0.12 -4.09 9.60 22.47 0.22 -3.88 16 9 C -0.11 -2.69 10.03 22.26 0.22 -2.47 16 10 C -0.10 -2.19 10.03 22.29 0.22 -1.97 16 11 C -0.12 -3.11 9.62 22.36 0.22 -2.89 16 12 C 0.12 4.41 6.20 38.35 0.24 4.65 16 13 N -0.32 -11.91 2.75 -187.16 -0.51 -12.42 16 14 C 0.04 1.24 11.11 83.49 0.93 2.17 16 15 C -0.26 -7.18 10.81 22.01 0.24 -6.94 16 16 C 0.02 0.71 12.03 85.24 1.03 1.73 16 17 N -0.31 -13.44 10.54 -56.96 -0.60 -14.04 16 18 C -0.12 -6.97 8.19 22.92 0.19 -6.78 16 19 C 0.06 3.39 5.56 -21.23 -0.12 3.27 16 20 C -0.48 -28.56 8.69 23.40 0.20 -28.35 16 21 H 0.07 3.93 7.67 -2.91 -0.02 3.90 16 22 C 0.03 1.69 5.24 85.24 0.45 2.14 16 23 N -0.83 -47.32 10.85 21.82 0.24 -47.09 16 24 Si 0.98 41.75 29.58 68.60 2.03 43.78 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 27 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 28 H 0.05 1.54 7.66 -2.39 -0.02 1.52 16 29 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 30 H 0.05 1.65 7.65 -2.38 -0.02 1.64 16 31 H 0.12 4.91 6.27 -2.91 -0.02 4.89 16 32 H 0.09 4.01 7.96 -2.91 -0.02 3.99 16 33 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 34 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 35 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.15 3.02 8.02 -2.91 -0.02 3.00 16 37 H 0.21 3.75 8.06 -2.91 -0.02 3.72 16 38 H 0.18 3.41 8.06 -2.91 -0.02 3.38 16 39 H 0.19 5.76 8.06 -2.91 -0.02 5.74 16 40 H 0.11 6.27 6.20 -2.91 -0.02 6.25 16 41 H 0.28 14.67 8.30 -92.71 -0.77 13.91 16 Total: -1.00 -77.26 351.48 6.81 -70.46 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 1.05 Total: 33.91 kcal Atomic # 6 Polarization: -62.50 SS G_CDS: 5.48 Total: -57.01 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -0.88 Total: -73.54 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.87 Total: -17.58 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -77.26 6.81 -70.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242711360.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.255 kcal (2) G-P(sol) polarization free energy of solvation -77.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds