Wall clock time and date at job start Tue Mar 31 2020 13:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39601 * 120.45389 * 130.92627 * 3 2 1 5 5 C 1.37687 * 120.18752 * 179.78763 * 4 3 2 6 6 C 1.39842 * 121.16981 * 0.47431 * 5 4 3 7 7 C 1.48271 * 119.54025 * 179.76453 * 6 5 4 8 8 C 1.39781 * 120.84639 * 179.74716 * 7 6 5 9 9 N 1.32104 * 119.04181 * 179.69433 * 8 7 6 10 10 C 1.32553 * 120.87251 * 0.61160 * 9 8 7 11 11 N 1.38292 * 119.07215 * 179.68381 * 10 9 8 12 12 C 1.48532 * 111.00057 * 242.57824 * 11 10 9 13 13 C 1.54937 * 103.22931 * 159.71758 * 12 11 10 14 14 C 1.54590 * 102.92291 * 322.58832 * 13 12 11 15 15 C 1.47900 * 111.00157 * 359.97228 * 11 10 9 16 16 N 1.32552 * 121.85602 * 359.65449 * 10 9 8 17 17 C 1.32097 * 120.88084 * 0.02698 * 16 10 9 18 18 C 1.38634 * 120.92595 * 359.78440 * 6 5 4 19 19 C 1.40593 * 119.73066 * 359.97438 * 18 6 5 20 20 C 1.40844 * 120.55398 * 179.97438 * 19 18 6 21 21 H 1.08001 * 120.00315 * 155.82422 * 20 19 18 22 22 C 1.40231 * 119.99833 * 335.82976 * 20 19 18 23 23 N 1.30662 * 120.00317 * 341.85272 * 22 20 19 24 24 Si 1.86801 * 119.99892 * 161.85528 * 22 20 19 25 25 H 1.48507 * 109.47253 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47393 * 119.99674 * 24 22 20 27 27 H 1.48503 * 109.47010 * 240.00148 * 24 22 20 28 28 H 1.08006 * 119.90288 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.41829 * 180.23705 * 5 4 3 30 30 H 1.07998 * 120.47726 * 359.96980 * 8 7 6 31 31 H 1.09006 * 110.66835 * 278.15630 * 12 11 10 32 32 H 1.08999 * 110.66749 * 41.28328 * 12 11 10 33 33 H 1.09005 * 110.72576 * 204.22725 * 13 12 11 34 34 H 1.09002 * 110.72266 * 80.94295 * 13 12 11 35 35 H 1.09003 * 110.31003 * 263.04365 * 14 13 12 36 36 H 1.08994 * 110.31242 * 140.86914 * 14 13 12 37 37 H 1.09007 * 109.91640 * 333.51383 * 15 11 10 38 38 H 1.09003 * 109.91689 * 94.80100 * 15 11 10 39 39 H 1.08001 * 120.48920 * 179.97438 * 17 16 10 40 40 H 1.07994 * 120.13893 * 180.02562 * 18 6 5 41 41 H 0.97002 * 120.00301 * 185.03060 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2752 0.7893 -0.9092 5 6 4.6521 0.7891 -0.9015 6 6 5.3707 -0.0007 0.0015 7 6 6.8529 0.0229 -0.0253 8 6 7.5984 -0.7515 0.8683 9 7 8.9174 -0.7080 0.8089 10 6 9.5333 0.0655 -0.0740 11 7 10.9158 0.0874 -0.0992 12 6 11.4326 1.4423 0.2220 13 6 12.8932 1.1698 0.6613 14 6 12.7776 -0.1610 1.4395 15 6 11.4791 -0.8133 0.9299 16 7 8.8614 0.8180 -0.9338 17 6 7.5405 0.8245 -0.9412 18 6 4.7166 -0.8057 0.9213 19 6 3.3112 -0.8311 0.9505 20 6 2.6289 -1.6430 1.8773 21 1 1.6208 -1.3938 2.1742 22 6 3.2585 -2.7750 2.4147 23 7 4.3057 -3.2835 1.8216 24 14 2.5999 -3.5558 3.9787 25 1 1.4149 -2.7953 4.4507 26 1 2.2088 -4.9617 3.7034 27 1 3.6527 -3.5308 5.0257 28 1 2.7407 1.4037 -1.6188 29 1 5.1866 1.4068 -1.6079 30 1 7.1031 -1.3798 1.5937 31 1 11.4092 2.0821 -0.6602 32 1 10.8626 1.8883 1.0370 33 1 13.2556 1.9664 1.3111 34 1 13.5418 1.0537 -0.2070 35 1 12.7092 0.0316 2.5102 36 1 13.6327 -0.8012 1.2232 37 1 10.7723 -0.9255 1.7522 38 1 11.6997 -1.7864 0.4911 39 1 6.9995 1.4404 -1.6443 40 1 5.2842 -1.4102 1.6132 41 1 4.6972 -4.1077 2.1508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243312700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:49 Heat of formation + Delta-G solvation = 107.159997 kcal Electronic energy + Delta-G solvation = -25068.592793 eV Core-core repulsion = 21527.351066 eV Total energy + Delta-G solvation = -3541.241727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06239 -38.78231 -37.69478 -35.28432 -34.38321 -33.54705 -33.11060 -31.11088 -30.11887 -29.08452 -28.02192 -26.11859 -24.27712 -24.12611 -21.93545 -21.33360 -20.96450 -20.64781 -18.12822 -17.68643 -17.33374 -16.95955 -15.97401 -15.72344 -15.24274 -14.88993 -14.61041 -13.98568 -13.88024 -13.40722 -13.35109 -13.12016 -12.98470 -12.77744 -12.62396 -12.53258 -12.33386 -11.86990 -11.68289 -11.58308 -11.42932 -11.39302 -11.33573 -11.21599 -11.03725 -10.77591 -10.67763 -10.54171 -10.03933 -9.96148 -9.91383 -9.61574 -8.93930 -8.52248 -7.90383 -7.35836 -7.16385 -4.84216 0.87589 1.39460 2.21588 2.54050 2.86418 2.92211 2.96844 3.33003 3.60981 3.82624 3.84992 4.21827 4.28561 4.34883 4.42947 4.66674 4.76423 4.93446 5.00992 5.14554 5.23467 5.26729 5.30967 5.33983 5.43183 5.59394 5.60961 5.66663 5.81319 5.87866 5.94292 5.98136 6.11605 6.16736 6.44394 6.51010 6.59509 6.70900 6.84948 6.93283 7.03298 7.29646 7.41825 7.53457 7.59198 7.73092 8.06775 8.30092 8.36132 8.40086 8.74779 9.62950 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.003347 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.541730 B = 8364.832296 C =10024.376868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.299 3.701 3 C -0.184 4.184 4 C -0.023 4.023 5 C -0.240 4.240 6 C -0.010 4.010 7 C -0.142 4.142 8 C 0.173 3.827 9 N -0.547 5.547 10 C 0.457 3.543 11 N -0.447 5.447 12 C 0.054 3.946 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.038 3.962 16 N -0.524 5.524 17 C 0.166 3.834 18 C -0.142 4.142 19 C 0.148 3.852 20 C -0.425 4.425 21 H 0.089 0.911 22 C 0.076 3.924 23 N -0.763 5.763 24 Si 0.915 3.085 25 H -0.255 1.255 26 H -0.268 1.268 27 H -0.265 1.265 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.175 0.825 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.172 0.828 40 H 0.131 0.869 41 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.650 3.938 1.203 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.011 4.011 3 C -0.190 4.190 4 C -0.044 4.044 5 C -0.259 4.259 6 C -0.012 4.012 7 C -0.147 4.147 8 C 0.006 3.994 9 N -0.265 5.265 10 C 0.102 3.898 11 N -0.167 5.167 12 C -0.072 4.072 13 C -0.163 4.163 14 C -0.171 4.171 15 C -0.090 4.090 16 N -0.240 5.240 17 C -0.001 4.001 18 C -0.161 4.161 19 C 0.142 3.858 20 C -0.452 4.452 21 H 0.107 0.893 22 C -0.147 4.147 23 N -0.385 5.385 24 Si 0.738 3.262 25 H -0.178 1.178 26 H -0.193 1.193 27 H -0.190 1.190 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.192 0.808 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.189 0.811 40 H 0.148 0.852 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.332 3.616 0.700 15.768 hybrid contribution -1.051 -0.477 1.151 1.630 sum 14.281 3.139 1.851 14.739 Atomic orbital electron populations 1.81031 1.12747 1.13003 1.11880 1.25785 0.92726 0.91169 0.91426 1.16969 0.83277 1.13079 1.05639 1.20370 0.93491 0.95405 0.95146 1.20051 0.93149 1.07634 1.05078 1.18170 0.88121 0.97670 0.97279 1.20723 0.96215 0.99093 0.98667 1.23378 0.87741 0.93145 0.95124 1.68195 1.11803 1.23910 1.22595 1.21064 0.91175 0.89846 0.87753 1.61295 1.01284 1.08584 1.45586 1.23199 0.94609 0.88529 1.00868 1.22535 0.95909 0.97375 1.00433 1.22453 0.97777 0.96826 0.99998 1.22933 0.95561 0.96152 0.94330 1.67916 1.09331 1.23616 1.23145 1.23285 0.88273 0.93714 0.94830 1.21362 0.93910 1.00458 1.00364 1.18310 0.91067 0.88307 0.88088 1.19851 1.01155 1.06212 1.17984 0.89304 1.26132 0.93517 0.96965 0.98087 1.69674 1.16878 1.16410 1.35567 0.86106 0.80444 0.79331 0.80354 1.17845 1.19307 1.18960 0.87972 0.88128 0.80829 0.88739 0.93130 0.90526 0.90344 0.91151 0.90712 0.89644 0.89939 0.81075 0.85168 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.90 18.54 41.84 0.78 -11.13 16 2 C 0.30 6.76 14.28 -22.47 -0.32 6.44 16 3 C -0.18 -4.00 5.95 -104.11 -0.62 -4.62 16 4 C -0.02 -0.44 9.74 -39.27 -0.38 -0.83 16 5 C -0.24 -4.32 9.39 -39.18 -0.37 -4.68 16 6 C -0.01 -0.19 5.86 -105.03 -0.62 -0.81 16 7 C -0.14 -2.45 5.91 -104.61 -0.62 -3.07 16 8 C 0.17 2.95 10.68 -16.86 -0.18 2.77 16 9 N -0.55 -9.16 8.11 -13.67 -0.11 -9.27 16 10 C 0.46 7.48 6.98 -322.82 -2.25 5.23 16 11 N -0.45 -6.21 5.35 -171.42 -0.92 -7.13 16 12 C 0.05 0.61 6.30 -1.90 -0.01 0.60 16 13 C -0.12 -1.03 7.06 -24.87 -0.18 -1.20 16 14 C -0.13 -1.14 6.93 -25.38 -0.18 -1.31 16 15 C 0.04 0.44 6.33 -2.76 -0.02 0.43 16 16 N -0.52 -8.66 10.19 -13.67 -0.14 -8.80 16 17 C 0.17 2.64 10.68 -16.86 -0.18 2.46 16 18 C -0.14 -2.99 8.09 -38.55 -0.31 -3.31 16 19 C 0.15 3.37 5.74 -104.68 -0.60 2.77 16 20 C -0.42 -9.85 8.58 -37.85 -0.32 -10.18 16 21 H 0.09 2.11 7.37 -52.49 -0.39 1.72 16 22 C 0.08 1.63 5.15 -17.30 -0.09 1.55 16 23 N -0.76 -16.40 10.97 55.56 0.61 -15.79 16 24 Si 0.91 16.43 29.60 -169.99 -5.03 11.40 16 25 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 26 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 27 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 28 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 29 H 0.10 1.52 6.18 -52.49 -0.32 1.20 16 30 H 0.17 2.88 6.28 -52.49 -0.33 2.55 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.60 7.99 -51.93 -0.42 0.18 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.13 6.45 -51.92 -0.34 0.79 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.17 2.29 6.26 -52.49 -0.33 1.96 16 40 H 0.13 2.74 4.33 -52.49 -0.23 2.51 16 41 H 0.29 5.65 8.30 -40.82 -0.34 5.31 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -25.71 347.77 -11.26 -36.97 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.44 Total: 6.28 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -7.24 Total: -7.77 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.22 Total: -52.12 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.03 Total: 11.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -25.71 -11.26 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243312700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.129 kcal (2) G-P(sol) polarization free energy of solvation -25.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds