Wall clock time and date at job start Tue Mar 31 2020 13:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39601 * 120.45389 * 130.92627 * 3 2 1 5 5 C 1.37687 * 120.18752 * 179.78763 * 4 3 2 6 6 C 1.39842 * 121.16981 * 0.47431 * 5 4 3 7 7 C 1.48271 * 119.54025 * 179.76453 * 6 5 4 8 8 C 1.39781 * 120.84639 * 179.74716 * 7 6 5 9 9 N 1.32104 * 119.04181 * 179.69433 * 8 7 6 10 10 C 1.32553 * 120.87251 * 0.61160 * 9 8 7 11 11 N 1.38292 * 119.07215 * 179.68381 * 10 9 8 12 12 C 1.48532 * 111.00057 * 242.57824 * 11 10 9 13 13 C 1.54937 * 103.22931 * 159.71758 * 12 11 10 14 14 C 1.54590 * 102.92291 * 322.58832 * 13 12 11 15 15 C 1.47900 * 111.00157 * 359.97228 * 11 10 9 16 16 N 1.32552 * 121.85602 * 359.65449 * 10 9 8 17 17 C 1.32097 * 120.88084 * 0.02698 * 16 10 9 18 18 C 1.38634 * 120.92595 * 359.78440 * 6 5 4 19 19 C 1.40593 * 119.73066 * 359.97438 * 18 6 5 20 20 C 1.40844 * 120.55398 * 179.97438 * 19 18 6 21 21 H 1.08001 * 120.00315 * 155.82422 * 20 19 18 22 22 C 1.40231 * 119.99833 * 335.82976 * 20 19 18 23 23 N 1.30662 * 120.00317 * 341.85272 * 22 20 19 24 24 Si 1.86801 * 119.99892 * 161.85528 * 22 20 19 25 25 H 1.48507 * 109.47253 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47393 * 119.99674 * 24 22 20 27 27 H 1.48503 * 109.47010 * 240.00148 * 24 22 20 28 28 H 1.08006 * 119.90288 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.41829 * 180.23705 * 5 4 3 30 30 H 1.07998 * 120.47726 * 359.96980 * 8 7 6 31 31 H 1.09006 * 110.66835 * 278.15630 * 12 11 10 32 32 H 1.08999 * 110.66749 * 41.28328 * 12 11 10 33 33 H 1.09005 * 110.72576 * 204.22725 * 13 12 11 34 34 H 1.09002 * 110.72266 * 80.94295 * 13 12 11 35 35 H 1.09003 * 110.31003 * 263.04365 * 14 13 12 36 36 H 1.08994 * 110.31242 * 140.86914 * 14 13 12 37 37 H 1.09007 * 109.91640 * 333.51383 * 15 11 10 38 38 H 1.09003 * 109.91689 * 94.80100 * 15 11 10 39 39 H 1.08001 * 120.48920 * 179.97438 * 17 16 10 40 40 H 1.07994 * 120.13893 * 180.02562 * 18 6 5 41 41 H 0.97002 * 120.00301 * 185.03060 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2752 0.7893 -0.9092 5 6 4.6521 0.7891 -0.9015 6 6 5.3707 -0.0007 0.0015 7 6 6.8529 0.0229 -0.0253 8 6 7.5984 -0.7515 0.8683 9 7 8.9174 -0.7080 0.8089 10 6 9.5333 0.0655 -0.0740 11 7 10.9158 0.0874 -0.0992 12 6 11.4326 1.4423 0.2220 13 6 12.8932 1.1698 0.6613 14 6 12.7776 -0.1610 1.4395 15 6 11.4791 -0.8133 0.9299 16 7 8.8614 0.8180 -0.9338 17 6 7.5405 0.8245 -0.9412 18 6 4.7166 -0.8057 0.9213 19 6 3.3112 -0.8311 0.9505 20 6 2.6289 -1.6430 1.8773 21 1 1.6208 -1.3938 2.1742 22 6 3.2585 -2.7750 2.4147 23 7 4.3057 -3.2835 1.8216 24 14 2.5999 -3.5558 3.9787 25 1 1.4149 -2.7953 4.4507 26 1 2.2088 -4.9617 3.7034 27 1 3.6527 -3.5308 5.0257 28 1 2.7407 1.4037 -1.6188 29 1 5.1866 1.4068 -1.6079 30 1 7.1031 -1.3798 1.5937 31 1 11.4092 2.0821 -0.6602 32 1 10.8626 1.8883 1.0370 33 1 13.2556 1.9664 1.3111 34 1 13.5418 1.0537 -0.2070 35 1 12.7092 0.0316 2.5102 36 1 13.6327 -0.8012 1.2232 37 1 10.7723 -0.9255 1.7522 38 1 11.6997 -1.7864 0.4911 39 1 6.9995 1.4404 -1.6443 40 1 5.2842 -1.4102 1.6132 41 1 4.6972 -4.1077 2.1508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243312700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:48 Heat of formation + Delta-G solvation = 96.871256 kcal Electronic energy + Delta-G solvation = -25069.038947 eV Core-core repulsion = 21527.351066 eV Total energy + Delta-G solvation = -3541.687880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.29339 -39.93500 -39.11912 -37.02795 -35.95030 -34.83691 -34.35935 -32.33824 -31.69692 -29.95475 -29.38429 -27.71291 -25.60369 -25.39600 -23.17132 -22.76711 -22.14797 -21.63093 -19.63045 -19.00850 -18.76918 -18.28046 -17.30455 -16.86921 -16.57508 -16.04330 -15.91753 -15.50655 -14.92134 -14.80064 -14.73991 -14.54856 -14.49031 -14.08269 -14.03004 -13.56000 -13.47486 -13.36222 -13.21620 -13.06135 -12.84799 -12.77622 -12.56174 -12.28285 -12.18018 -12.07339 -11.86766 -11.59566 -11.50276 -11.39071 -11.31414 -11.04929 -10.25842 -9.77682 -9.50575 -8.91513 -8.66701 -6.53641 -0.50160 0.10563 0.67227 1.00924 1.36986 1.48509 1.51015 2.05714 2.12507 2.19663 2.35382 2.65160 2.84649 3.09065 3.55665 3.60612 3.64701 3.68815 3.82744 3.84602 3.94115 4.01981 4.12659 4.30032 4.46689 4.51492 4.65810 4.74712 4.81315 4.89222 4.95648 4.99498 5.01168 5.10812 5.14000 5.20694 5.25888 5.30801 5.44650 5.57744 5.70465 5.76109 5.92754 6.01610 6.11570 6.18716 6.43244 6.65018 6.76309 6.98801 7.08863 8.06297 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.003347 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.541730 B = 8364.832296 C =10024.376868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C 0.304 3.696 3 C -0.207 4.207 4 C -0.021 4.021 5 C -0.228 4.228 6 C 0.000 4.000 7 C -0.161 4.161 8 C 0.171 3.829 9 N -0.557 5.557 10 C 0.456 3.544 11 N -0.456 5.456 12 C 0.051 3.949 13 C -0.114 4.114 14 C -0.125 4.125 15 C 0.033 3.967 16 N -0.534 5.534 17 C 0.180 3.820 18 C -0.163 4.163 19 C 0.129 3.871 20 C -0.462 4.462 21 H 0.070 0.930 22 C 0.049 3.951 23 N -0.783 5.783 24 Si 0.973 3.027 25 H -0.268 1.268 26 H -0.263 1.263 27 H -0.252 1.252 28 H 0.130 0.870 29 H 0.140 0.860 30 H 0.171 0.829 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.201 0.799 40 H 0.124 0.876 41 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.245 4.952 0.612 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C -0.004 4.004 3 C -0.213 4.213 4 C -0.042 4.042 5 C -0.247 4.247 6 C -0.002 4.002 7 C -0.166 4.166 8 C 0.005 3.995 9 N -0.276 5.276 10 C 0.101 3.899 11 N -0.177 5.177 12 C -0.075 4.075 13 C -0.152 4.152 14 C -0.163 4.163 15 C -0.094 4.094 16 N -0.251 5.251 17 C 0.013 3.987 18 C -0.182 4.182 19 C 0.124 3.876 20 C -0.489 4.489 21 H 0.088 0.912 22 C -0.172 4.172 23 N -0.406 5.406 24 Si 0.793 3.207 25 H -0.192 1.192 26 H -0.187 1.187 27 H -0.176 1.176 28 H 0.148 0.852 29 H 0.158 0.842 30 H 0.187 0.813 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.218 0.782 40 H 0.142 0.858 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.960 4.637 0.102 18.549 hybrid contribution -1.659 -0.715 1.219 2.179 sum 16.301 3.922 1.321 16.818 Atomic orbital electron populations 1.81006 1.13327 1.14040 1.12841 1.26047 0.93006 0.90559 0.90798 1.17238 0.82900 1.14355 1.06838 1.20701 0.94073 0.94773 0.94629 1.20493 0.92912 1.06693 1.04600 1.18363 0.89207 0.96418 0.96250 1.20615 0.95211 1.00716 1.00099 1.23404 0.88119 0.92960 0.95051 1.68280 1.11506 1.24626 1.23146 1.21519 0.92325 0.88964 0.87117 1.61377 0.99895 1.10342 1.46117 1.23321 0.96343 0.87068 1.00732 1.22552 0.93833 0.97746 1.01111 1.22454 0.96393 0.97021 1.00482 1.23011 0.96787 0.96232 0.93339 1.68037 1.09535 1.24040 1.23449 1.23707 0.88181 0.92714 0.94148 1.21318 0.93310 1.01926 1.01689 1.18583 0.92029 0.88636 0.88401 1.19875 1.00906 1.07986 1.20133 0.91223 1.26673 0.93728 0.96774 1.00008 1.69674 1.17485 1.16982 1.36468 0.85270 0.79606 0.78352 0.77445 1.19154 1.18721 1.17596 0.85184 0.84244 0.81253 0.88610 0.93931 0.88271 0.89433 0.90204 0.88951 0.91296 0.90227 0.78208 0.85797 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.47 18.54 19.00 0.35 -25.12 16 2 C 0.30 14.07 14.28 88.33 1.26 15.33 16 3 C -0.21 -9.11 5.95 -19.54 -0.12 -9.22 16 4 C -0.02 -0.77 9.74 22.47 0.22 -0.56 16 5 C -0.23 -7.62 9.39 22.53 0.21 -7.41 16 6 C 0.00 0.00 5.86 -20.13 -0.12 -0.11 16 7 C -0.16 -5.38 5.91 -19.86 -0.12 -5.49 16 8 C 0.17 5.83 10.68 85.03 0.91 6.74 16 9 N -0.56 -18.44 8.11 -197.17 -1.60 -20.04 16 10 C 0.46 14.38 6.98 261.49 1.82 16.20 16 11 N -0.46 -12.00 5.35 -696.26 -3.73 -15.72 16 12 C 0.05 1.03 6.30 86.65 0.55 1.58 16 13 C -0.11 -1.52 7.06 31.80 0.22 -1.30 16 14 C -0.13 -1.81 6.93 31.47 0.22 -1.59 16 15 C 0.03 0.74 6.33 86.45 0.55 1.29 16 16 N -0.53 -16.60 10.19 -197.16 -2.01 -18.60 16 17 C 0.18 5.27 10.68 85.03 0.91 6.18 16 18 C -0.16 -7.02 8.09 22.94 0.19 -6.84 16 19 C 0.13 6.05 5.74 -19.90 -0.11 5.94 16 20 C -0.46 -22.41 8.58 23.39 0.20 -22.20 16 21 H 0.07 3.52 7.37 -2.91 -0.02 3.50 16 22 C 0.05 2.18 5.15 85.35 0.44 2.62 16 23 N -0.78 -34.52 10.97 21.87 0.24 -34.28 16 24 Si 0.97 34.44 29.60 68.60 2.03 36.47 16 25 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 26 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 27 H -0.25 -8.32 7.11 99.48 0.71 -7.61 16 28 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 29 H 0.14 3.56 6.18 -2.91 -0.02 3.54 16 30 H 0.17 5.82 6.28 -2.91 -0.02 5.80 16 31 H 0.10 1.90 8.14 -2.38 -0.02 1.89 16 32 H 0.04 0.93 7.99 -2.39 -0.02 0.91 16 33 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.78 6.45 -2.38 -0.02 1.77 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 39 H 0.20 4.51 6.26 -2.91 -0.02 4.49 16 40 H 0.12 5.41 4.33 -2.91 -0.01 5.39 16 41 H 0.30 11.81 8.30 -92.71 -0.77 11.04 16 Total: -1.00 -56.82 347.77 3.60 -53.22 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 1.09 Total: 22.92 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 7.23 Total: 1.15 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -6.74 Total: -113.76 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Total: -56.82 3.60 -53.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243312700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.090 kcal (2) G-P(sol) polarization free energy of solvation -56.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds