Wall clock time and date at job start Tue Mar 31 2020 13:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35081 * 126.45349 * 2 1 4 4 N 1.30599 * 109.00133 * 180.02562 * 3 2 1 5 5 C 1.33768 * 109.55789 * 359.72886 * 4 3 2 6 6 C 1.36151 * 107.88203 * 0.43536 * 5 4 3 7 7 C 1.47782 * 126.76620 * 179.83323 * 6 5 4 8 8 C 1.39680 * 120.01869 * 159.56067 * 7 6 5 9 9 C 1.37659 * 119.98777 * 179.97438 * 8 7 6 10 10 C 1.39550 * 120.01364 * 359.97438 * 9 8 7 11 11 C 1.48202 * 119.97907 * 180.02562 * 10 9 8 12 12 C 1.39506 * 120.06171 * 0.27055 * 11 10 9 13 13 C 1.37808 * 119.94232 * 180.25812 * 12 11 10 14 14 C 1.39022 * 120.05804 * 359.49471 * 13 12 11 15 15 O 1.35687 * 119.94322 * 180.25772 * 14 13 12 16 16 C 1.34808 * 116.99915 * 354.55547 * 15 14 13 17 17 H 1.07996 * 120.00673 * 5.08801 * 16 15 14 18 18 C 1.38642 * 120.00024 * 185.09657 * 16 15 14 19 19 N 1.31570 * 119.99767 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99951 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47602 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47272 * 119.99745 * 20 18 16 23 23 H 1.48508 * 109.47016 * 239.99485 * 20 18 16 24 24 C 1.39022 * 120.11518 * 0.22918 * 14 13 12 25 25 C 1.37812 * 120.05730 * 0.02672 * 24 14 13 26 26 C 1.39531 * 120.03302 * 0.29219 * 10 9 8 27 27 C 1.37662 * 120.01784 * 359.45463 * 26 10 9 28 28 H 1.09001 * 109.46921 * 264.47451 * 1 2 3 29 29 H 1.09002 * 109.47604 * 24.47534 * 1 2 3 30 30 H 1.09000 * 109.47249 * 144.48108 * 1 2 3 31 31 H 1.08007 * 125.49740 * 359.97438 * 3 2 1 32 32 H 1.08001 * 126.05844 * 180.27519 * 5 4 3 33 33 H 1.08001 * 120.00579 * 0.02562 * 8 7 6 34 34 H 1.08000 * 119.99307 * 180.02562 * 9 8 7 35 35 H 1.08001 * 120.02767 * 0.02562 * 12 11 10 36 36 H 1.08000 * 119.97615 * 179.77375 * 13 12 11 37 37 H 0.96996 * 119.99706 * 180.02562 * 19 18 16 38 38 H 1.07996 * 119.97382 * 180.02562 * 24 14 13 39 39 H 1.07997 * 120.02763 * 179.97438 * 25 24 14 40 40 H 1.08004 * 119.99102 * 179.69901 * 26 10 9 41 41 H 1.08005 * 120.01239 * 180.29471 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2676 1.0865 0.0000 4 7 3.5135 0.6948 -0.0006 5 6 3.5626 -0.6419 0.0050 6 6 2.2832 -1.1074 -0.0006 7 6 1.8566 -2.5223 -0.0009 8 6 0.5678 -2.8637 0.4157 9 6 0.1710 -4.1818 0.4147 10 6 1.0558 -5.1769 -0.0030 11 6 0.6275 -6.5957 -0.0043 12 6 -0.6614 -6.9370 0.4062 13 6 -1.0552 -8.2576 0.4090 14 6 -0.1729 -9.2483 -0.0067 15 8 -0.5650 -10.5473 -0.0080 16 6 -1.7789 -10.8207 0.5105 17 1 -2.4250 -10.0152 0.8269 18 6 -2.1982 -12.1361 0.6377 19 7 -1.4113 -13.1175 0.2520 20 14 -3.8800 -12.5149 1.3568 21 1 -4.5645 -11.2455 1.7108 22 1 -4.6915 -13.2529 0.3558 23 1 -3.7209 -13.3477 2.5761 24 6 1.1101 -8.9103 -0.4218 25 6 1.5107 -7.5917 -0.4215 26 6 2.3452 -4.8372 -0.4140 27 6 2.7417 -3.5190 -0.4184 28 1 -0.3633 -0.0990 1.0229 29 1 -0.3634 0.9353 -0.4258 30 1 -0.3634 -0.8364 -0.5970 31 1 1.9330 2.1134 -0.0004 32 1 4.4585 -1.2451 0.0102 33 1 -0.1175 -2.0936 0.7378 34 1 -0.8257 -4.4459 0.7363 35 1 -1.3486 -6.1673 0.7251 36 1 -2.0517 -8.5228 0.7302 37 1 -1.7048 -14.0377 0.3406 38 1 1.7935 -9.6817 -0.7447 39 1 2.5077 -7.3297 -0.7436 40 1 3.0310 -5.6084 -0.7324 41 1 3.7383 -3.2557 -0.7411 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243593477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:12 Heat of formation + Delta-G solvation = 70.388676 kcal Electronic energy + Delta-G solvation = -24276.181135 eV Core-core repulsion = 20701.052132 eV Total energy + Delta-G solvation = -3575.129002 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.98889 -40.98105 -39.92744 -38.01083 -35.11564 -34.43234 -33.52173 -32.41206 -31.48013 -30.64098 -28.40777 -27.87544 -27.25063 -24.61431 -24.28889 -22.91244 -22.20139 -21.65643 -21.06966 -19.85064 -19.04420 -18.35237 -17.46392 -16.69254 -16.66917 -16.43483 -16.22242 -15.62075 -15.56903 -15.34662 -15.02202 -14.89483 -14.58614 -14.37354 -14.30226 -14.06325 -13.91005 -13.78337 -13.55650 -13.48707 -13.03031 -12.94593 -12.59873 -12.51136 -12.12154 -12.06412 -11.78995 -11.15250 -11.06489 -10.93203 -10.68615 -10.33439 -9.90510 -9.85686 -9.24481 -8.50242 -8.32508 -6.16572 -0.33682 0.50480 0.57394 0.73940 1.35306 1.38916 1.49607 1.53607 1.86373 2.15953 2.17789 2.72766 2.99752 3.27651 3.45698 3.55327 3.78005 3.83267 3.90910 3.95130 4.02559 4.13103 4.15639 4.34305 4.37960 4.42895 4.46625 4.52734 4.66357 4.67016 4.78122 4.90467 4.99266 5.06687 5.11879 5.19800 5.26502 5.33643 5.45186 5.58917 5.63259 5.66405 5.72747 5.89863 5.99730 6.00690 6.14823 6.27905 6.94549 7.07759 7.73568 8.72906 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.033647 B = 0.002116 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.973480 B =13229.917257 C =13993.717300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.457 5.457 3 C 0.188 3.812 4 N -0.534 5.534 5 C -0.028 4.028 6 C 0.006 3.994 7 C -0.035 4.035 8 C -0.117 4.117 9 C -0.123 4.123 10 C -0.025 4.025 11 C -0.138 4.138 12 C -0.054 4.054 13 C -0.242 4.242 14 C 0.119 3.881 15 O -0.226 6.226 16 C -0.413 4.413 17 H 0.105 0.895 18 C -0.023 4.023 19 N -0.918 5.918 20 Si 1.020 2.980 21 H -0.250 1.250 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.203 4.203 25 C -0.054 4.054 26 C -0.122 4.122 27 C -0.096 4.096 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.243 0.757 32 H 0.178 0.822 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.124 0.876 37 H 0.273 0.727 38 H 0.118 0.882 39 H 0.153 0.847 40 H 0.140 0.860 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.465 26.995 0.231 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.139 5.139 3 C -0.093 4.093 4 N -0.252 5.252 5 C -0.177 4.177 6 C -0.108 4.108 7 C -0.036 4.036 8 C -0.136 4.136 9 C -0.141 4.141 10 C -0.025 4.025 11 C -0.139 4.139 12 C -0.072 4.072 13 C -0.261 4.261 14 C 0.068 3.932 15 O -0.132 6.132 16 C -0.489 4.489 17 H 0.122 0.878 18 C -0.221 4.221 19 N -0.556 5.556 20 Si 0.839 3.161 21 H -0.173 1.173 22 H -0.194 1.194 23 H -0.194 1.194 24 C -0.222 4.222 25 C -0.071 4.071 26 C -0.140 4.140 27 C -0.115 4.115 28 H 0.112 0.888 29 H 0.138 0.862 30 H 0.107 0.893 31 H 0.259 0.741 32 H 0.195 0.805 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.142 0.858 37 H 0.083 0.917 38 H 0.136 0.864 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.070 27.123 0.136 27.202 hybrid contribution -1.227 -1.435 0.214 1.900 sum 0.843 25.687 0.350 25.704 Atomic orbital electron populations 1.22584 0.74388 1.06652 1.04923 1.45611 1.08932 1.05813 1.53509 1.25718 0.84947 0.94725 1.03929 1.70123 1.21161 1.12588 1.21332 1.22618 0.96232 0.91136 1.07753 1.19738 0.91117 0.87441 1.12536 1.17997 0.94852 0.88847 1.01935 1.21466 0.95503 0.96572 1.00018 1.21286 1.00207 0.92159 1.00445 1.18897 0.94407 0.91226 0.97993 1.18644 0.94809 0.92440 1.07975 1.21168 0.95562 0.94681 0.95798 1.21213 1.01046 0.93542 1.10308 1.20058 0.94247 0.84852 0.94010 1.83926 1.35868 1.21807 1.71633 1.21899 0.91182 0.94137 1.41688 0.87777 1.26626 1.04428 0.93814 0.97231 1.70192 1.38915 1.00228 1.46232 0.84511 0.74427 0.79354 0.77818 1.17271 1.19360 1.19420 1.20412 0.94171 0.97758 1.09902 1.21116 0.99750 0.90184 0.96095 1.21306 0.95540 0.96716 1.00407 1.21168 0.99964 0.91469 0.98859 0.88836 0.86193 0.89272 0.74085 0.80532 0.83699 0.84450 0.83635 0.85800 0.91750 0.86368 0.82996 0.84238 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 9.38 127.77 1.20 1.54 16 2 N -0.46 -6.68 3.18 -539.21 -1.71 -8.39 16 3 C 0.19 2.84 12.54 180.22 2.26 5.10 16 4 N -0.53 -11.91 11.22 -199.36 -2.24 -14.14 16 5 C -0.03 -0.61 11.28 83.91 0.95 0.33 16 6 C 0.01 0.12 6.73 40.26 0.27 0.39 16 7 C -0.03 -0.70 5.86 -20.06 -0.12 -0.82 16 8 C -0.12 -2.17 8.66 22.48 0.19 -1.98 16 9 C -0.12 -2.67 9.41 22.45 0.21 -2.46 16 10 C -0.02 -0.64 5.88 -20.00 -0.12 -0.76 16 11 C -0.14 -4.36 5.88 -20.02 -0.12 -4.47 16 12 C -0.05 -1.82 9.42 22.47 0.21 -1.61 16 13 C -0.24 -10.21 9.15 22.36 0.20 -10.01 16 14 C 0.12 5.82 6.65 22.65 0.15 5.97 16 15 O -0.23 -13.38 9.75 -21.83 -0.21 -13.59 16 16 C -0.41 -23.54 9.48 67.92 0.64 -22.90 16 17 H 0.10 5.41 5.19 -2.91 -0.02 5.39 16 18 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 19 N -0.92 -55.54 13.67 21.61 0.30 -55.24 16 20 Si 1.02 41.88 29.55 68.60 2.03 43.91 16 21 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 22 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 24 C -0.20 -8.46 9.98 22.36 0.22 -8.24 16 25 C -0.05 -1.78 9.42 22.47 0.21 -1.57 16 26 C -0.12 -2.73 9.41 22.45 0.21 -2.52 16 27 C -0.10 -1.93 9.56 22.48 0.21 -1.71 16 28 H 0.09 0.37 7.73 -2.39 -0.02 0.35 16 29 H 0.12 0.05 8.13 -2.39 -0.02 0.03 16 30 H 0.09 0.64 6.57 -2.39 -0.02 0.63 16 31 H 0.24 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.18 3.26 7.69 -2.91 -0.02 3.24 16 33 H 0.15 1.86 5.05 -2.91 -0.01 1.85 16 34 H 0.14 2.58 6.18 -2.91 -0.02 2.56 16 35 H 0.15 3.80 6.18 -2.91 -0.02 3.78 16 36 H 0.12 5.26 5.62 -2.91 -0.02 5.24 16 37 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 39 H 0.15 3.87 6.18 -2.91 -0.02 3.85 16 40 H 0.14 2.72 6.18 -2.91 -0.02 2.70 16 41 H 0.14 2.29 7.41 -2.91 -0.02 2.27 16 Total: -1.00 -76.65 345.41 6.52 -70.13 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 1.09 Total: 23.87 kcal Atomic # 6 Polarization: -53.81 SS G_CDS: 7.27 Total: -46.54 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -3.65 Total: -77.78 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.21 Total: -13.59 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -76.65 6.52 -70.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.524 kcal (2) G-P(sol) polarization free energy of solvation -76.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds