Wall clock time and date at job start Tue Mar 31 2020 13:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47109 * 110.55865 * 2 1 4 4 C 1.53425 * 108.33509 * 175.25322 * 3 2 1 5 5 O 1.43135 * 107.88544 * 296.44508 * 4 3 2 6 6 C 1.36180 * 116.67026 * 45.36789 * 5 4 3 7 7 C 1.38504 * 118.63290 * 165.06064 * 6 5 4 8 8 C 1.39359 * 120.10549 * 179.27698 * 7 6 5 9 9 C 1.48240 * 120.11512 * 180.28020 * 8 7 6 10 10 C 1.39854 * 119.54317 * 359.97438 * 9 8 7 11 11 C 1.37683 * 121.17123 * 179.97438 * 10 9 8 12 12 C 1.39600 * 120.18883 * 359.95988 * 11 10 9 13 13 C 1.43206 * 120.45616 * 180.02562 * 12 11 10 14 14 N 9.85349 * 104.83526 * 256.56792 * 5 1 2 15 15 C 1.46552 * 119.09582 * 0.02562 * 12 11 10 16 16 C 1.40844 * 120.55593 * 180.02562 * 15 12 11 17 17 H 1.08005 * 120.00018 * 24.40620 * 16 15 12 18 18 C 1.40226 * 120.00337 * 204.39829 * 16 15 12 19 19 N 1.30665 * 119.99984 * 17.32075 * 18 16 15 20 20 Si 1.86800 * 120.00266 * 197.31355 * 18 16 15 21 21 H 1.48498 * 109.47106 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47026 * 120.00320 * 20 18 16 23 23 H 1.48496 * 109.47439 * 240.00255 * 20 18 16 24 24 C 1.38661 * 119.53790 * 179.72618 * 9 8 7 25 25 C 1.39437 * 119.76321 * 0.25399 * 8 7 6 26 26 C 1.37746 * 119.98764 * 0.10386 * 25 8 7 27 27 C 1.39141 * 121.36827 * 345.06785 * 6 5 4 28 28 H 1.08996 * 109.47068 * 291.09021 * 1 2 3 29 29 H 1.08991 * 109.47064 * 51.09495 * 1 2 3 30 30 H 1.09004 * 109.46625 * 171.09346 * 1 2 3 31 31 H 1.09008 * 110.02631 * 55.44652 * 3 2 1 32 32 H 1.08999 * 109.63192 * 294.83635 * 3 2 1 33 33 H 1.08999 * 109.78099 * 176.84435 * 4 3 2 34 34 H 1.09000 * 109.77521 * 56.03522 * 4 3 2 35 35 H 1.07996 * 119.94368 * 359.55795 * 7 6 5 36 36 H 1.08005 * 119.41410 * 359.97438 * 10 9 8 37 37 H 1.07997 * 119.91062 * 179.97438 * 11 10 9 38 38 H 0.96999 * 120.00293 * 184.50703 * 19 18 16 39 39 H 1.07997 * 120.13606 * 0.02562 * 24 9 8 40 40 H 1.07999 * 120.00206 * 180.02562 * 25 8 7 41 41 H 1.08007 * 119.79245 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9856 1.3774 0.0000 4 6 3.5140 1.3196 0.1205 5 8 3.8333 0.7326 1.3863 6 6 3.1352 -0.3832 1.7361 7 6 3.6078 -1.1617 2.7796 8 6 2.9095 -2.3018 3.1730 9 6 3.4117 -3.1318 4.2939 10 6 4.5896 -2.7627 4.9515 11 6 5.0859 -3.5087 5.9968 12 6 4.4140 -4.6563 6.4214 13 6 4.9249 -5.4362 7.5085 14 7 5.3307 -6.0555 8.3699 15 6 3.1786 -5.0522 5.7396 16 6 2.4756 -6.2040 6.1430 17 1 2.5834 -6.5772 7.1509 18 6 1.6357 -6.8664 5.2364 19 7 1.7516 -6.6417 3.9544 20 14 0.3510 -8.0700 5.8611 21 1 0.4227 -8.1458 7.3424 22 1 -1.0002 -7.6072 5.4543 23 1 0.6088 -9.4134 5.2833 24 6 2.7044 -4.2605 4.6791 25 6 1.7365 -2.6586 2.5090 26 6 1.2732 -1.8862 1.4668 27 6 1.9698 -0.7472 1.0689 28 1 -0.3633 0.3698 0.9588 29 1 -0.3633 0.6454 -0.7996 30 1 -0.3633 -1.0153 -0.1591 31 1 1.5728 1.9309 0.8435 32 1 1.7104 1.8717 -0.9317 33 1 3.9266 2.3271 0.0666 34 1 3.9245 0.7086 -0.6834 35 1 4.5164 -0.8823 3.2921 36 1 5.1192 -1.8767 4.6337 37 1 5.9975 -3.2051 6.4899 38 1 1.1287 -7.0490 3.3323 39 1 1.7943 -4.5318 4.1648 40 1 1.1920 -3.5411 2.8109 41 1 0.3644 -2.1658 0.9543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243941577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:32 Heat of formation + Delta-G solvation = 43.314122 kcal Electronic energy + Delta-G solvation = -25383.781247 eV Core-core repulsion = 21807.478204 eV Total energy + Delta-G solvation = -3576.303043 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90926 -38.30431 -37.05820 -36.49207 -35.03542 -34.09468 -31.63405 -30.57131 -29.81142 -29.62831 -28.03507 -25.91336 -25.07160 -24.32484 -22.21123 -21.90810 -20.65731 -19.79427 -18.10980 -17.60281 -17.11211 -16.63939 -16.52652 -15.40632 -15.08624 -14.72483 -14.59207 -14.40287 -14.19072 -13.83438 -13.43812 -13.28520 -12.90727 -12.84619 -12.68649 -12.62617 -12.28822 -11.99782 -11.87532 -11.71322 -11.56842 -11.42155 -11.30278 -11.15006 -11.07571 -10.71766 -10.68797 -10.52760 -10.02240 -9.81921 -9.65584 -9.45437 -8.34856 -7.93067 -7.76937 -7.20657 -6.86354 -4.72612 1.22126 1.73619 2.34639 2.64230 2.92487 2.98598 3.04790 3.29726 3.57685 3.69997 3.92013 3.94520 4.41600 4.45322 4.46579 4.69206 4.84956 4.89050 5.16988 5.21576 5.28052 5.35574 5.41945 5.43117 5.48298 5.52728 5.63899 5.69367 5.76504 5.97981 6.07789 6.25456 6.34536 6.49307 6.68602 6.73764 6.77567 6.88321 6.99622 7.00131 7.07844 7.25404 7.47928 7.60807 7.66417 7.77774 7.87642 8.19690 8.42073 8.52766 8.83309 9.74559 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.003625 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.444626 B = 7722.710487 C = 9440.293415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.488 5.488 3 C 0.012 3.988 4 C 0.059 3.941 5 O -0.317 6.317 6 C 0.085 3.915 7 C -0.121 4.121 8 C -0.008 4.008 9 C -0.018 4.018 10 C -0.234 4.234 11 C -0.029 4.029 12 C -0.185 4.185 13 C 0.300 3.700 14 N -0.511 5.511 15 C 0.149 3.851 16 C -0.429 4.429 17 H 0.086 0.914 18 C 0.077 3.923 19 N -0.765 5.765 20 Si 0.911 3.089 21 H -0.256 1.256 22 H -0.266 1.266 23 H -0.269 1.269 24 C -0.141 4.141 25 C -0.113 4.113 26 C -0.122 4.122 27 C 0.022 3.978 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.290 0.710 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 13.297 -11.609 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.204 5.204 3 C -0.115 4.115 4 C -0.016 4.016 5 O -0.231 6.231 6 C 0.039 3.961 7 C -0.140 4.140 8 C -0.009 4.009 9 C -0.019 4.019 10 C -0.254 4.254 11 C -0.049 4.049 12 C -0.191 4.191 13 C -0.009 4.009 14 N -0.190 5.190 15 C 0.144 3.856 16 C -0.456 4.456 17 H 0.104 0.896 18 C -0.145 4.145 19 N -0.387 5.387 20 Si 0.734 3.266 21 H -0.179 1.179 22 H -0.191 1.191 23 H -0.194 1.194 24 C -0.159 4.159 25 C -0.131 4.131 26 C -0.143 4.143 27 C -0.075 4.075 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.153 0.847 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.510 12.141 -10.899 16.928 hybrid contribution -1.106 0.028 0.062 1.109 sum -5.617 12.169 -10.837 17.236 Atomic orbital electron populations 1.22523 0.85154 1.03405 1.01122 1.59176 1.09028 1.12094 1.40132 1.22866 0.96586 0.89133 1.02933 1.23069 0.94011 0.99403 0.85165 1.86234 1.60425 1.39773 1.36697 1.18494 0.92095 0.88593 0.96930 1.20562 1.01397 0.94351 0.97642 1.18807 0.93677 0.93301 0.95135 1.18443 0.95269 0.94457 0.93716 1.20175 1.00031 1.03169 1.01997 1.20375 0.96765 0.92745 0.95065 1.16999 0.99922 1.00554 1.01669 1.25810 0.91408 0.91785 0.91944 1.81014 1.12105 1.11880 1.13992 1.18348 0.87172 0.91018 0.89089 1.19803 1.19913 1.07127 0.98806 0.89596 1.26068 0.97129 0.97159 0.94167 1.69729 1.30786 1.35578 1.02651 0.86169 0.79753 0.79651 0.80991 1.17926 1.19070 1.19442 1.21435 1.00983 0.93547 0.99981 1.21204 0.96416 1.00004 0.95487 1.20768 1.00419 0.94646 0.98427 1.18813 0.96640 0.97961 0.94090 0.94258 0.90931 0.90178 0.92612 0.88631 0.87210 0.90922 0.84702 0.88033 0.88166 0.89858 0.84963 0.84679 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.82 60.06 0.53 0.75 16 2 N -0.49 -5.83 4.92 -178.31 -0.88 -6.70 16 3 C 0.01 0.11 5.68 -3.49 -0.02 0.09 16 4 C 0.06 0.60 7.25 37.38 0.27 0.87 16 5 O -0.32 -4.53 10.40 -20.32 -0.21 -4.74 16 6 C 0.09 1.35 6.47 -39.15 -0.25 1.10 16 7 C -0.12 -2.05 9.30 -39.07 -0.36 -2.42 16 8 C -0.01 -0.15 5.87 -104.92 -0.62 -0.77 16 9 C -0.02 -0.37 5.86 -105.03 -0.62 -0.98 16 10 C -0.23 -4.63 9.37 -39.18 -0.37 -5.00 16 11 C -0.03 -0.59 9.74 -39.28 -0.38 -0.97 16 12 C -0.19 -4.26 5.95 -104.11 -0.62 -4.88 16 13 C 0.30 7.09 14.28 -22.47 -0.32 6.77 16 14 N -0.51 -12.40 18.54 41.84 0.78 -11.63 16 15 C 0.15 3.58 5.73 -104.68 -0.60 2.98 16 16 C -0.43 -10.40 8.58 -37.85 -0.32 -10.72 16 17 H 0.09 2.13 7.37 -52.48 -0.39 1.74 16 18 C 0.08 1.72 5.16 -17.30 -0.09 1.63 16 19 N -0.76 -17.12 10.94 55.56 0.61 -16.52 16 20 Si 0.91 17.01 29.60 -169.99 -5.03 11.98 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 22 H -0.27 -4.76 7.11 56.52 0.40 -4.35 16 23 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 24 C -0.14 -3.15 8.06 -38.54 -0.31 -3.46 16 25 C -0.11 -1.92 9.40 -39.32 -0.37 -2.28 16 26 C -0.12 -1.82 9.05 -39.36 -0.36 -2.17 16 27 C 0.02 0.33 5.81 -83.54 -0.49 -0.16 16 28 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.08 0.71 6.39 -51.93 -0.33 0.38 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.14 2.18 6.12 -52.49 -0.32 1.86 16 36 H 0.10 1.77 6.09 -52.48 -0.32 1.45 16 37 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.29 5.79 8.30 -40.82 -0.34 5.45 16 39 H 0.13 2.94 4.24 -52.49 -0.22 2.72 16 40 H 0.14 2.32 6.15 -52.49 -0.32 2.00 16 41 H 0.13 1.56 6.09 -52.48 -0.32 1.24 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -27.10 343.67 -9.16 -36.26 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.31 Total: 5.79 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -5.29 Total: -19.62 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.51 Total: -34.85 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.21 Total: -4.74 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.10 -9.16 -36.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243941577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.576 kcal (2) G-P(sol) polarization free energy of solvation -27.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds