Wall clock time and date at job start Tue Mar 31 2020 13:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47109 * 110.55865 * 2 1 4 4 C 1.53425 * 108.33509 * 175.25322 * 3 2 1 5 5 O 1.43135 * 107.88544 * 296.44508 * 4 3 2 6 6 C 1.36180 * 116.67026 * 45.36789 * 5 4 3 7 7 C 1.38504 * 118.63290 * 165.06064 * 6 5 4 8 8 C 1.39359 * 120.10549 * 179.27698 * 7 6 5 9 9 C 1.48240 * 120.11512 * 180.28020 * 8 7 6 10 10 C 1.39854 * 119.54317 * 359.97438 * 9 8 7 11 11 C 1.37683 * 121.17123 * 179.97438 * 10 9 8 12 12 C 1.39600 * 120.18883 * 359.95988 * 11 10 9 13 13 C 1.43206 * 120.45616 * 180.02562 * 12 11 10 14 14 N 9.85349 * 104.83526 * 256.56792 * 5 1 2 15 15 C 1.46552 * 119.09582 * 0.02562 * 12 11 10 16 16 C 1.40844 * 120.55593 * 180.02562 * 15 12 11 17 17 H 1.08005 * 120.00018 * 24.40620 * 16 15 12 18 18 C 1.40226 * 120.00337 * 204.39829 * 16 15 12 19 19 N 1.30665 * 119.99984 * 17.32075 * 18 16 15 20 20 Si 1.86800 * 120.00266 * 197.31355 * 18 16 15 21 21 H 1.48498 * 109.47106 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47026 * 120.00320 * 20 18 16 23 23 H 1.48496 * 109.47439 * 240.00255 * 20 18 16 24 24 C 1.38661 * 119.53790 * 179.72618 * 9 8 7 25 25 C 1.39437 * 119.76321 * 0.25399 * 8 7 6 26 26 C 1.37746 * 119.98764 * 0.10386 * 25 8 7 27 27 C 1.39141 * 121.36827 * 345.06785 * 6 5 4 28 28 H 1.08996 * 109.47068 * 291.09021 * 1 2 3 29 29 H 1.08991 * 109.47064 * 51.09495 * 1 2 3 30 30 H 1.09004 * 109.46625 * 171.09346 * 1 2 3 31 31 H 1.09008 * 110.02631 * 55.44652 * 3 2 1 32 32 H 1.08999 * 109.63192 * 294.83635 * 3 2 1 33 33 H 1.08999 * 109.78099 * 176.84435 * 4 3 2 34 34 H 1.09000 * 109.77521 * 56.03522 * 4 3 2 35 35 H 1.07996 * 119.94368 * 359.55795 * 7 6 5 36 36 H 1.08005 * 119.41410 * 359.97438 * 10 9 8 37 37 H 1.07997 * 119.91062 * 179.97438 * 11 10 9 38 38 H 0.96999 * 120.00293 * 184.50703 * 19 18 16 39 39 H 1.07997 * 120.13606 * 0.02562 * 24 9 8 40 40 H 1.07999 * 120.00206 * 180.02562 * 25 8 7 41 41 H 1.08007 * 119.79245 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9856 1.3774 0.0000 4 6 3.5140 1.3196 0.1205 5 8 3.8333 0.7326 1.3863 6 6 3.1352 -0.3832 1.7361 7 6 3.6078 -1.1617 2.7796 8 6 2.9095 -2.3018 3.1730 9 6 3.4117 -3.1318 4.2939 10 6 4.5896 -2.7627 4.9515 11 6 5.0859 -3.5087 5.9968 12 6 4.4140 -4.6563 6.4214 13 6 4.9249 -5.4362 7.5085 14 7 5.3307 -6.0555 8.3699 15 6 3.1786 -5.0522 5.7396 16 6 2.4756 -6.2040 6.1430 17 1 2.5834 -6.5772 7.1509 18 6 1.6357 -6.8664 5.2364 19 7 1.7516 -6.6417 3.9544 20 14 0.3510 -8.0700 5.8611 21 1 0.4227 -8.1458 7.3424 22 1 -1.0002 -7.6072 5.4543 23 1 0.6088 -9.4134 5.2833 24 6 2.7044 -4.2605 4.6791 25 6 1.7365 -2.6586 2.5090 26 6 1.2732 -1.8862 1.4668 27 6 1.9698 -0.7472 1.0689 28 1 -0.3633 0.3698 0.9588 29 1 -0.3633 0.6454 -0.7996 30 1 -0.3633 -1.0153 -0.1591 31 1 1.5728 1.9309 0.8435 32 1 1.7104 1.8717 -0.9317 33 1 3.9266 2.3271 0.0666 34 1 3.9245 0.7086 -0.6834 35 1 4.5164 -0.8823 3.2921 36 1 5.1192 -1.8767 4.6337 37 1 5.9975 -3.2051 6.4899 38 1 1.1287 -7.0490 3.3323 39 1 1.7943 -4.5318 4.1648 40 1 1.1920 -3.5411 2.8109 41 1 0.3644 -2.1658 0.9543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243941577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:31 Heat of formation + Delta-G solvation = 30.133318 kcal Electronic energy + Delta-G solvation = -25384.352810 eV Core-core repulsion = 21807.478204 eV Total energy + Delta-G solvation = -3576.874606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.96240 -39.80680 -38.29910 -37.65179 -36.81737 -35.74979 -32.99731 -31.96345 -31.24562 -30.71540 -29.25039 -27.58394 -26.12444 -25.45041 -23.53433 -23.30653 -22.15667 -20.92493 -19.60310 -19.08398 -18.53390 -17.71494 -17.68478 -16.91794 -16.21407 -16.05548 -15.71939 -15.45906 -15.31226 -15.20502 -14.78940 -14.58163 -14.53395 -14.38222 -14.25433 -13.79999 -13.47869 -13.41533 -13.26162 -13.06869 -12.98448 -12.80077 -12.70411 -12.65940 -12.40109 -12.11064 -11.87078 -11.74752 -11.59258 -11.27900 -11.14203 -10.88230 -9.61428 -9.49684 -9.26340 -8.84217 -8.22334 -6.51285 -0.20459 0.49754 0.82118 1.02366 1.37847 1.49724 1.52773 2.04930 2.15585 2.22636 2.40196 2.66392 2.71504 3.01999 3.60105 3.63228 3.71429 3.73878 3.99051 4.11179 4.15192 4.31383 4.32476 4.44734 4.46954 4.54303 4.55790 4.66487 4.72649 4.78169 4.93285 4.96341 4.99389 5.07563 5.16022 5.23366 5.26726 5.49070 5.59059 5.69261 5.81630 5.92020 5.96139 6.00646 6.14806 6.19848 6.46481 6.50754 6.67437 6.79812 6.98351 8.10857 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.003625 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.444626 B = 7722.710487 C = 9440.293415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.496 5.496 3 C 0.011 3.989 4 C 0.050 3.950 5 O -0.330 6.330 6 C 0.076 3.924 7 C -0.124 4.124 8 C -0.039 4.039 9 C -0.011 4.011 10 C -0.232 4.232 11 C -0.026 4.026 12 C -0.211 4.211 13 C 0.305 3.695 14 N -0.532 5.532 15 C 0.130 3.870 16 C -0.464 4.464 17 H 0.067 0.933 18 C 0.048 3.952 19 N -0.784 5.784 20 Si 0.974 3.026 21 H -0.269 1.269 22 H -0.248 1.248 23 H -0.264 1.264 24 C -0.163 4.163 25 C -0.119 4.119 26 C -0.124 4.124 27 C 0.034 3.966 28 H 0.036 0.964 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.072 0.928 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.301 0.699 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 15.556 -14.101 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.212 5.212 3 C -0.115 4.115 4 C -0.025 4.025 5 O -0.245 6.245 6 C 0.029 3.971 7 C -0.143 4.143 8 C -0.040 4.040 9 C -0.012 4.012 10 C -0.251 4.251 11 C -0.046 4.046 12 C -0.217 4.217 13 C -0.003 4.003 14 N -0.212 5.212 15 C 0.124 3.876 16 C -0.492 4.492 17 H 0.086 0.914 18 C -0.172 4.172 19 N -0.407 5.407 20 Si 0.794 3.206 21 H -0.193 1.193 22 H -0.172 1.172 23 H -0.189 1.189 24 C -0.182 4.182 25 C -0.138 4.138 26 C -0.144 4.144 27 C -0.065 4.065 28 H 0.055 0.945 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.162 0.838 34 H 0.090 0.910 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.113 0.887 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.502 14.434 -13.421 20.463 hybrid contribution -0.778 -0.427 0.596 1.069 sum -6.280 14.007 -12.826 20.003 Atomic orbital electron populations 1.22646 0.83320 1.04357 1.02126 1.59195 1.10611 1.13346 1.38074 1.23038 0.95920 0.87775 1.04773 1.23469 0.94875 1.00846 0.83327 1.86215 1.60522 1.39026 1.38756 1.18550 0.92653 0.89098 0.96828 1.20595 1.01383 0.94093 0.98202 1.18716 0.95142 0.94396 0.95735 1.18748 0.94932 0.93752 0.93771 1.20535 0.99664 1.03646 1.01217 1.20670 0.97270 0.91692 0.94988 1.17232 1.00525 1.01843 1.02133 1.26019 0.90943 0.91494 0.91844 1.80983 1.12987 1.12481 1.14742 1.18642 0.87640 0.91383 0.89889 1.19862 1.22322 1.08388 0.98623 0.91437 1.26682 0.98210 0.98239 0.94111 1.69723 1.31498 1.36222 1.03304 0.85268 0.78139 0.77733 0.79482 1.19268 1.17177 1.18855 1.21405 1.01628 0.94616 1.00540 1.21201 0.96171 1.00124 0.96278 1.20975 1.01203 0.94409 0.97816 1.19050 0.95877 0.97812 0.93724 0.94489 0.88084 0.89971 0.92594 0.85145 0.83754 0.90985 0.84329 0.85308 0.85562 0.88716 0.85378 0.85701 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.82 127.69 1.13 1.44 16 2 N -0.50 -10.17 4.92 -718.06 -3.53 -13.71 16 3 C 0.01 0.17 5.68 86.41 0.49 0.66 16 4 C 0.05 0.82 7.25 72.12 0.52 1.35 16 5 O -0.33 -8.69 10.40 -95.61 -0.99 -9.68 16 6 C 0.08 2.28 6.47 22.55 0.15 2.43 16 7 C -0.12 -4.12 9.30 22.60 0.21 -3.91 16 8 C -0.04 -1.43 5.87 -20.06 -0.12 -1.55 16 9 C -0.01 -0.46 5.86 -20.13 -0.12 -0.58 16 10 C -0.23 -9.07 9.37 22.53 0.21 -8.86 16 11 C -0.03 -1.05 9.74 22.47 0.22 -0.83 16 12 C -0.21 -10.02 5.95 -19.53 -0.12 -10.13 16 13 C 0.31 14.93 14.28 88.33 1.26 16.19 16 14 N -0.53 -26.58 18.54 19.00 0.35 -26.23 16 15 C 0.13 6.51 5.73 -19.90 -0.11 6.39 16 16 C -0.46 -23.66 8.58 23.39 0.20 -23.46 16 17 H 0.07 3.56 7.37 -2.91 -0.02 3.54 16 18 C 0.05 2.22 5.16 85.35 0.44 2.66 16 19 N -0.78 -35.98 10.94 21.87 0.24 -35.74 16 20 Si 0.97 35.47 29.60 68.60 2.03 37.51 16 21 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 22 H -0.25 -8.26 7.11 99.48 0.71 -7.55 16 23 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 24 C -0.16 -7.60 8.06 22.94 0.18 -7.42 16 25 C -0.12 -4.07 9.40 22.44 0.21 -3.86 16 26 C -0.12 -3.51 9.05 22.41 0.20 -3.30 16 27 C 0.03 0.92 5.81 38.36 0.22 1.14 16 28 H 0.04 0.59 8.12 -2.39 -0.02 0.57 16 29 H 0.10 0.96 8.08 -2.39 -0.02 0.94 16 30 H 0.08 1.20 6.39 -2.39 -0.02 1.18 16 31 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.14 4.34 6.12 -2.91 -0.02 4.32 16 36 H 0.13 4.29 6.09 -2.91 -0.02 4.27 16 37 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.30 12.14 8.30 -92.71 -0.77 11.37 16 39 H 0.13 5.97 4.24 -2.91 -0.01 5.96 16 40 H 0.13 4.45 6.15 -2.91 -0.02 4.43 16 41 H 0.15 3.40 6.09 -2.91 -0.02 3.38 16 Total: -1.00 -60.72 343.67 4.37 -56.35 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 1.09 Total: 23.15 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 5.18 Total: -31.65 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -2.94 Total: -75.67 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.99 Total: -9.68 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.51 kcal Total: -60.72 4.37 -56.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243941577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.481 kcal (2) G-P(sol) polarization free energy of solvation -60.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds