Wall clock time and date at job start Tue Mar 31 2020 13:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35866 * 116.99809 * 2 1 4 4 C 1.39537 * 119.76636 * 359.97438 * 3 2 1 5 5 C 1.37841 * 120.63169 * 180.25889 * 4 3 2 6 6 C 1.39322 * 120.15840 * 359.49005 * 5 4 3 7 7 C 1.47605 * 120.23319 * 180.25769 * 6 5 4 8 8 C 1.39889 * 120.01031 * 130.00178 * 7 6 5 9 9 C 1.36566 * 119.99006 * 179.69162 * 8 7 6 10 10 C 1.39815 * 120.00439 * 0.58067 * 9 8 7 11 11 C 1.47671 * 119.98816 * 179.69724 * 10 9 8 12 12 N 1.31564 * 125.84952 * 179.71464 * 11 10 9 13 13 C 1.33678 * 109.25906 * 179.83073 * 12 11 10 14 14 C 1.35007 * 108.39875 * 0.43039 * 13 12 11 15 15 N 1.36522 * 125.84855 * 0.02562 * 11 10 9 16 16 H 0.97002 * 126.49456 * 0.02562 * 15 11 10 17 17 C 1.39811 * 120.02309 * 359.71487 * 10 9 8 18 18 C 1.36563 * 120.01003 * 359.97438 * 17 10 9 19 19 C 1.41983 * 119.53414 * 0.52601 * 6 5 4 20 20 C 1.40819 * 120.31024 * 179.74558 * 19 6 5 21 21 H 1.08001 * 119.99845 * 332.98347 * 20 19 6 22 22 C 1.40024 * 119.99964 * 152.97700 * 20 19 6 23 23 N 1.30791 * 120.00061 * 344.38980 * 22 20 19 24 24 Si 1.86797 * 119.99881 * 164.38228 * 22 20 19 25 25 H 1.48493 * 109.47218 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47293 * 120.00419 * 24 22 20 27 27 H 1.48510 * 109.47161 * 240.00423 * 24 22 20 28 28 C 1.37886 * 119.76873 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47211 * 300.00454 * 1 2 3 30 30 H 1.08998 * 109.46853 * 60.00428 * 1 2 3 31 31 H 1.09002 * 109.46985 * 180.02562 * 1 2 3 32 32 H 1.07995 * 119.68331 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.91873 * 179.74739 * 5 4 3 34 34 H 1.07999 * 120.00359 * 359.97174 * 8 7 6 35 35 H 1.07994 * 119.99685 * 180.27236 * 9 8 7 36 36 H 1.08007 * 125.80289 * 180.17407 * 13 12 11 37 37 H 1.07998 * 126.47520 * 179.78238 * 14 13 12 38 38 H 1.07996 * 119.99558 * 180.02562 * 17 10 9 39 39 H 1.07993 * 120.00375 * 180.02562 * 18 17 10 40 40 H 0.97005 * 120.00334 * 179.97438 * 23 22 20 41 41 H 1.08002 * 120.08747 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2810 2.3777 -0.0005 5 6 1.8882 3.6152 -0.0059 6 6 3.2779 3.7131 -0.0001 7 6 3.9297 5.0374 -0.0001 8 6 4.9334 5.3233 0.9315 9 6 5.5405 6.5465 0.9271 10 6 5.1507 7.5172 -0.0006 11 6 5.8029 8.8421 -0.0007 12 7 5.5318 9.8343 -0.8211 13 6 6.3138 10.8773 -0.5252 14 6 7.1113 10.5323 0.5081 15 7 6.7946 9.2452 0.8465 16 1 7.1983 8.7186 1.5541 17 6 4.1434 7.2341 -0.9279 18 6 3.5401 6.0089 -0.9283 19 6 4.0629 2.5299 -0.0001 20 6 5.4688 2.6098 0.0003 21 1 5.9607 3.4724 -0.4243 22 6 6.2289 1.5709 0.5514 23 7 5.6602 0.6853 1.3278 24 14 8.0550 1.4499 0.1774 25 1 8.4517 2.5652 -0.7192 26 1 8.8263 1.5350 1.4436 27 1 8.3390 0.1535 -0.4890 28 6 3.4231 1.2772 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2032 2.3108 -0.0014 33 1 1.2850 4.5111 -0.0104 34 1 5.2311 4.5751 1.6512 35 1 6.3184 6.7658 1.6434 36 1 6.3114 11.8321 -1.0300 37 1 7.8576 11.1551 0.9789 38 1 3.8430 7.9840 -1.6446 39 1 2.7624 5.7902 -1.6449 40 1 6.1867 -0.0347 1.7093 41 1 4.0090 0.3700 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243976347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:50 Heat of formation + Delta-G solvation = 57.501383 kcal Electronic energy + Delta-G solvation = -25193.082645 eV Core-core repulsion = 21617.394808 eV Total energy + Delta-G solvation = -3575.687837 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79529 -39.07676 -38.32691 -36.28136 -33.71663 -32.52265 -31.96911 -30.58197 -29.74744 -29.32896 -27.64221 -26.14366 -25.31180 -22.99316 -22.31977 -21.38166 -20.70228 -20.36452 -19.67003 -18.33092 -17.79615 -16.21790 -15.87626 -15.26158 -14.97004 -14.90434 -14.89962 -14.80326 -14.45911 -13.63111 -13.56729 -13.48435 -13.19455 -12.93077 -12.89974 -12.53419 -12.02210 -11.84272 -11.76694 -11.44985 -11.29060 -11.15403 -10.85449 -10.53453 -10.48980 -10.12050 -10.01418 -9.95946 -9.86143 -9.63765 -9.28799 -8.97338 -8.45746 -7.65470 -7.57191 -7.00068 -6.66893 -4.52664 1.24407 2.07166 2.34236 2.66863 2.89476 3.00658 3.06306 3.11041 3.11886 3.40275 3.82339 4.24689 4.44809 4.52634 4.55690 5.03157 5.29042 5.33195 5.46988 5.47598 5.61102 5.66530 5.70551 5.77823 5.87155 5.98592 6.04300 6.07232 6.24154 6.27652 6.46970 6.67864 6.72776 6.74216 6.91470 6.93703 7.01392 7.10813 7.30610 7.33891 7.39544 7.53077 7.61136 7.72985 7.88337 7.95302 8.14970 8.26699 8.63522 8.71399 8.79820 10.01636 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.003798 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.796966 B = 7370.774772 C = 9255.218726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.135 3.865 4 C -0.315 4.315 5 C -0.037 4.037 6 C -0.214 4.214 7 C 0.045 3.955 8 C -0.100 4.100 9 C -0.109 4.109 10 C -0.063 4.063 11 C 0.271 3.729 12 N -0.487 5.487 13 C -0.027 4.027 14 C -0.064 4.064 15 N -0.569 5.569 16 H 0.419 0.581 17 C -0.072 4.072 18 C -0.136 4.136 19 C 0.158 3.842 20 C -0.446 4.446 21 H 0.087 0.913 22 C 0.077 3.923 23 N -0.778 5.778 24 Si 0.904 3.096 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.270 1.270 28 C -0.192 4.192 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.284 0.716 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 8.925 0.888 9.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.091 3.909 4 C -0.335 4.335 5 C -0.055 4.055 6 C -0.216 4.216 7 C 0.045 3.955 8 C -0.118 4.118 9 C -0.129 4.129 10 C -0.065 4.065 11 C 0.011 3.989 12 N -0.206 5.206 13 C -0.177 4.177 14 C -0.198 4.198 15 N -0.171 5.171 16 H 0.257 0.743 17 C -0.092 4.092 18 C -0.154 4.154 19 C 0.155 3.845 20 C -0.474 4.474 21 H 0.105 0.895 22 C -0.143 4.143 23 N -0.402 5.402 24 Si 0.728 3.272 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.195 1.195 28 C -0.212 4.212 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.152 0.848 35 H 0.125 0.875 36 H 0.185 0.815 37 H 0.192 0.808 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.095 0.905 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.344 8.596 0.389 8.611 hybrid contribution 1.467 -0.104 0.982 1.769 sum 1.811 8.492 1.371 8.791 Atomic orbital electron populations 1.22771 0.80673 1.01938 1.00572 1.86008 1.19592 1.29066 1.89670 1.19031 0.92473 0.82532 0.96882 1.20375 0.97442 0.92473 1.23211 1.20370 0.93235 0.95372 0.96538 1.18570 0.92132 0.91125 1.19745 1.18983 0.92571 0.92464 0.91517 1.21065 0.96117 0.95478 0.99138 1.20609 1.00116 0.93874 0.98262 1.17480 0.99821 0.88572 1.00615 1.21597 0.91436 0.95468 0.90377 1.70418 1.25810 0.99793 1.24615 1.22321 0.97367 0.99124 0.98888 1.22750 1.06461 0.86915 1.03708 1.43474 1.31063 1.13076 1.29522 0.74266 1.20671 0.94583 0.96738 0.97212 1.21040 1.01503 0.93243 0.99630 1.17211 0.92735 0.88833 0.85685 1.19604 0.90996 1.03872 1.32938 0.89476 1.25970 1.01345 0.94229 0.92790 1.69820 1.38559 1.11192 1.20590 0.86309 0.81813 0.79687 0.79406 1.18130 1.19846 1.19485 1.20531 0.89371 0.99129 1.12202 0.93608 0.93634 0.89871 0.88452 0.88664 0.84783 0.87541 0.81475 0.80822 0.85659 0.86110 0.90540 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.80 101.05 0.99 1.56 16 2 O -0.33 -7.02 10.48 -19.32 -0.20 -7.23 16 3 C 0.13 3.15 6.67 -39.23 -0.26 2.89 16 4 C -0.32 -6.76 9.02 -39.24 -0.35 -7.11 16 5 C -0.04 -0.78 9.47 -39.32 -0.37 -1.16 16 6 C -0.21 -4.85 5.52 -104.24 -0.58 -5.43 16 7 C 0.05 0.92 4.92 -104.84 -0.52 0.41 16 8 C -0.10 -1.91 7.94 -39.57 -0.31 -2.22 16 9 C -0.11 -1.79 9.64 -39.60 -0.38 -2.17 16 10 C -0.06 -1.05 5.88 -104.87 -0.62 -1.67 16 11 C 0.27 4.26 7.77 -154.58 -1.20 3.06 16 12 N -0.49 -7.94 10.86 -11.22 -0.12 -8.06 16 13 C -0.03 -0.35 11.84 -17.90 -0.21 -0.56 16 14 C -0.06 -0.69 12.03 -16.48 -0.20 -0.89 16 15 N -0.57 -6.90 6.07 -10.55 -0.06 -6.97 16 16 H 0.42 3.92 8.07 -40.82 -0.33 3.59 16 17 C -0.07 -1.24 9.63 -39.60 -0.38 -1.62 16 18 C -0.14 -2.47 9.44 -39.57 -0.37 -2.85 16 19 C 0.16 3.93 5.55 -106.57 -0.59 3.34 16 20 C -0.45 -10.84 7.09 -37.94 -0.27 -11.11 16 21 H 0.09 2.09 6.65 -52.49 -0.35 1.74 16 22 C 0.08 1.79 5.16 -17.33 -0.09 1.70 16 23 N -0.78 -18.94 10.99 55.55 0.61 -18.33 16 24 Si 0.90 17.71 29.59 -169.99 -5.03 12.69 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 26 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 27 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 28 C -0.19 -4.88 8.58 -38.80 -0.33 -5.22 16 29 H 0.05 0.68 7.65 -51.93 -0.40 0.28 16 30 H 0.05 0.66 7.64 -51.93 -0.40 0.26 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.83 6.25 -52.49 -0.33 1.50 16 33 H 0.10 1.79 8.03 -52.49 -0.42 1.37 16 34 H 0.13 2.70 7.31 -52.49 -0.38 2.32 16 35 H 0.11 1.41 7.16 -52.49 -0.38 1.04 16 36 H 0.17 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.13 2.03 7.83 -52.49 -0.41 1.62 16 39 H 0.12 2.04 8.03 -52.49 -0.42 1.62 16 40 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 41 H 0.13 3.38 6.26 -52.49 -0.33 3.05 16 LS Contribution 348.71 15.07 5.25 5.25 Total: -1.00 -28.99 348.71 -10.15 -39.14 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -4.54 Total: 12.57 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -6.05 Total: -29.05 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.42 Total: -33.37 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.20 Total: -7.23 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.99 -10.15 -39.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243976347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.638 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds