Wall clock time and date at job start Tue Mar 31 2020 13:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35892 * 117.00084 * 2 1 4 4 C 1.38738 * 119.93526 * 359.97438 * 3 2 1 5 5 C 1.37890 * 120.16284 * 180.02562 * 4 3 2 6 6 C 1.39673 * 120.04072 * 359.96034 * 5 4 3 7 7 C 1.47816 * 120.06273 * 180.02562 * 6 5 4 8 8 N 1.31634 * 119.45127 * 136.24317 * 7 6 5 9 9 C 1.33645 * 121.74085 * 180.02562 * 8 7 6 10 10 C 1.40494 * 120.98545 * 179.97438 * 9 8 7 11 11 C 1.36238 * 119.70080 * 180.02562 * 10 9 8 12 12 C 1.39162 * 121.76208 * 359.97134 * 11 10 9 13 13 C 1.36130 * 121.46700 * 0.02681 * 12 11 10 14 14 C 1.40794 * 119.46613 * 359.75007 * 13 12 11 15 15 C 1.40010 * 121.39187 * 179.70283 * 14 13 12 16 16 C 1.40373 * 117.97090 * 180.27343 * 15 14 13 17 17 C 1.40825 * 120.41043 * 180.27026 * 16 15 14 18 18 H 1.07997 * 119.99616 * 151.83518 * 17 16 15 19 19 C 1.40079 * 120.00054 * 331.83885 * 17 16 15 20 20 N 1.30772 * 120.00077 * 346.46777 * 19 17 16 21 21 Si 1.86800 * 119.99955 * 166.46514 * 19 17 16 22 22 H 1.48503 * 109.47090 * 89.99956 * 21 19 17 23 23 H 1.48496 * 109.47470 * 210.00108 * 21 19 17 24 24 H 1.48500 * 109.47332 * 330.00341 * 21 19 17 25 25 C 1.39655 * 119.87125 * 0.29518 * 6 5 4 26 26 C 1.38351 * 119.83938 * 359.49611 * 25 6 5 27 27 N 1.39961 * 120.02096 * 180.23149 * 26 25 6 28 28 H 1.09008 * 109.46830 * 60.00750 * 1 2 3 29 29 H 1.09000 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47256 * 300.00868 * 1 2 3 31 31 H 1.07997 * 119.91982 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.97787 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.14604 * 0.03629 * 10 9 8 34 34 H 1.08003 * 119.11640 * 179.97438 * 11 10 9 35 35 H 1.07999 * 119.27096 * 180.02562 * 12 11 10 36 36 H 1.07992 * 120.26678 * 180.02562 * 13 12 11 37 37 H 1.08002 * 121.01021 * 0.54557 * 15 14 13 38 38 H 0.97002 * 119.99901 * 179.97438 * 20 19 17 39 39 H 1.08000 * 120.07968 * 179.70221 * 25 6 5 40 40 H 0.97005 * 119.99667 * 180.22995 * 27 26 25 41 41 H 0.96994 * 120.00390 * 0.22954 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2890 2.3735 -0.0005 5 6 1.9102 3.6046 -0.0011 6 6 3.3046 3.6842 -0.0002 7 6 3.9710 5.0036 -0.0002 8 7 5.0013 5.2084 0.7931 9 6 5.6373 6.3832 0.8304 10 6 6.7352 6.5845 1.6837 11 6 7.3640 7.7929 1.7010 12 6 6.9496 8.8460 0.8911 13 6 5.8933 8.7165 0.0422 14 6 5.2050 7.4901 -0.0249 15 6 4.1096 7.3144 -0.8790 16 6 3.4727 6.0635 -0.8841 17 6 2.3695 5.8286 -1.7273 18 1 2.1648 4.8297 -2.0829 19 6 1.5379 6.8907 -2.1049 20 7 1.6156 8.0364 -1.4791 21 14 0.3180 6.6706 -3.5023 22 1 -0.9736 6.1788 -2.9590 23 1 0.1048 7.9730 -4.1832 24 1 0.8528 5.6849 -4.4757 25 6 4.0681 2.5148 -0.0051 26 6 3.4395 1.2823 -0.0002 27 7 4.2010 0.1080 -0.0001 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2107 2.3143 -0.0005 32 1 1.3180 4.5078 -0.0019 33 1 7.0791 5.7848 2.3229 34 1 8.2067 7.9375 2.3609 35 1 7.4777 9.7869 0.9370 36 1 5.5885 9.5464 -0.5780 37 1 3.7678 8.1155 -1.5177 38 1 1.0400 8.7720 -1.7409 39 1 5.1465 2.5725 -0.0093 40 1 3.7599 -0.7560 0.0000 41 1 5.1696 0.1580 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244893081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:36 Heat of formation + Delta-G solvation = 28.316311 kcal Electronic energy + Delta-G solvation = -25709.253837 eV Core-core repulsion = 22132.300440 eV Total energy + Delta-G solvation = -3576.953397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.79703 -38.90622 -37.20071 -35.81435 -34.19904 -33.92924 -31.68837 -30.53569 -29.45162 -28.46231 -28.14515 -26.67402 -25.63407 -23.17859 -22.06778 -21.53591 -20.76925 -20.34151 -18.03015 -17.72982 -16.72961 -16.63096 -16.10579 -15.80144 -15.46553 -15.02479 -14.78920 -14.51660 -13.65296 -13.55539 -13.47554 -13.21331 -13.10825 -12.78292 -12.58503 -12.44760 -12.04985 -11.84898 -11.69871 -11.37899 -11.24003 -11.06033 -10.90870 -10.80438 -10.62418 -10.51186 -10.45231 -10.03356 -9.83469 -9.54180 -8.98838 -8.31592 -8.08016 -7.34230 -7.19135 -7.01531 -6.70576 -4.54215 1.39039 1.93096 2.08723 2.27703 2.86519 2.93873 2.99368 3.45672 3.55019 3.72465 3.86354 4.26846 4.44808 4.66865 5.15683 5.21574 5.28552 5.32408 5.52584 5.57567 5.66187 5.69669 5.74564 5.88674 6.04547 6.14771 6.17864 6.26537 6.30900 6.38751 6.49584 6.71209 6.81130 6.87545 6.98175 7.05686 7.24622 7.26339 7.37203 7.38099 7.44519 7.51908 7.72131 7.77309 7.92373 8.02897 8.15596 8.29393 8.46837 8.54267 9.25078 9.88432 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009898 B = 0.005205 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.268143 B = 5378.508305 C = 7876.840789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.328 6.328 3 C 0.038 3.962 4 C -0.170 4.170 5 C -0.100 4.100 6 C 0.011 3.989 7 C 0.121 3.879 8 N -0.458 5.458 9 C 0.026 3.974 10 C -0.060 4.060 11 C -0.179 4.179 12 C -0.119 4.119 13 C -0.130 4.130 14 C -0.046 4.046 15 C -0.173 4.173 16 C 0.078 3.922 17 C -0.424 4.424 18 H 0.093 0.907 19 C 0.071 3.929 20 N -0.774 5.774 21 Si 0.911 3.089 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.257 1.257 25 C -0.140 4.140 26 C 0.181 3.819 27 N -0.882 5.882 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.287 0.713 39 H 0.125 0.875 40 H 0.397 0.603 41 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.237 -7.983 0.475 8.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.242 6.242 3 C -0.010 4.010 4 C -0.189 4.189 5 C -0.121 4.121 6 C 0.010 3.990 7 C -0.034 4.034 8 N -0.165 5.165 9 C -0.096 4.096 10 C -0.079 4.079 11 C -0.200 4.200 12 C -0.137 4.137 13 C -0.149 4.149 14 C -0.048 4.048 15 C -0.198 4.198 16 C 0.073 3.927 17 C -0.453 4.453 18 H 0.111 0.889 19 C -0.150 4.150 20 N -0.398 5.398 21 Si 0.734 3.266 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.180 1.180 25 C -0.164 4.164 26 C 0.079 3.921 27 N -0.424 5.424 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.140 0.860 32 H 0.155 0.845 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.098 0.902 39 H 0.143 0.857 40 H 0.224 0.776 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.916 -8.448 1.079 8.565 hybrid contribution -0.932 0.707 -1.100 1.606 sum -1.848 -7.740 -0.021 7.958 Atomic orbital electron populations 1.22894 0.79228 1.02854 1.01206 1.85854 1.20617 1.27316 1.90416 1.18443 0.90245 0.84393 1.07890 1.20868 0.99130 0.91768 1.07146 1.21065 0.93787 0.97159 1.00049 1.18122 0.92238 0.90454 0.98232 1.21056 0.94122 0.93364 0.94880 1.67442 1.07093 1.21838 1.20109 1.19308 0.99215 0.89733 1.01368 1.20490 0.93990 0.96518 0.96913 1.20249 1.02394 0.94128 1.03201 1.20465 0.97656 0.97997 0.97576 1.20855 0.97109 0.96550 1.00393 1.19712 0.95629 0.93253 0.96215 1.21478 0.95895 0.99437 1.03005 1.19200 0.92110 0.90891 0.90545 1.19678 1.07058 0.95966 1.22558 0.88940 1.26028 0.98187 0.94345 0.96409 1.69771 1.33064 1.03047 1.33882 0.86236 0.80174 0.79193 0.80993 1.19037 1.19843 1.18049 1.20525 0.99503 0.89267 1.07110 1.16897 0.87180 0.87550 1.00457 1.42158 1.07792 1.05205 1.87231 0.92999 0.89128 0.93062 0.85972 0.84497 0.86990 0.87777 0.87920 0.87156 0.85101 0.90206 0.85691 0.77554 0.77857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.33 -4.70 9.73 -19.40 -0.19 -4.89 16 3 C 0.04 0.63 6.71 -38.91 -0.26 0.37 16 4 C -0.17 -2.87 9.01 -39.52 -0.36 -3.23 16 5 C -0.10 -1.96 7.83 -39.17 -0.31 -2.27 16 6 C 0.01 0.24 5.27 -104.91 -0.55 -0.31 16 7 C 0.12 2.91 6.54 -80.61 -0.53 2.38 16 8 N -0.46 -11.10 10.06 -4.84 -0.05 -11.15 16 9 C 0.03 0.62 6.75 -82.94 -0.56 0.06 16 10 C -0.06 -1.25 9.99 -39.45 -0.39 -1.64 16 11 C -0.18 -3.32 9.90 -39.96 -0.40 -3.72 16 12 C -0.12 -2.21 9.91 -40.00 -0.40 -2.61 16 13 C -0.13 -2.72 9.80 -39.37 -0.39 -3.11 16 14 C -0.05 -1.09 5.87 -104.97 -0.62 -1.71 16 15 C -0.17 -4.35 8.52 -38.11 -0.32 -4.67 16 16 C 0.08 1.94 5.66 -104.69 -0.59 1.35 16 17 C -0.42 -10.07 6.76 -37.91 -0.26 -10.33 16 18 H 0.09 2.13 6.50 -52.49 -0.34 1.79 16 19 C 0.07 1.60 5.21 -17.31 -0.09 1.51 16 20 N -0.77 -18.26 10.97 55.55 0.61 -17.65 16 21 Si 0.91 17.03 29.58 -169.99 -5.03 12.00 16 22 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 23 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 25 C -0.14 -2.67 9.48 -39.01 -0.37 -3.04 16 26 C 0.18 3.07 6.76 -83.62 -0.57 2.50 16 27 N -0.88 -11.72 9.09 32.48 0.30 -11.43 16 28 H 0.05 0.53 7.65 -51.92 -0.40 0.13 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 31 H 0.12 1.74 6.27 -52.49 -0.33 1.41 16 32 H 0.14 2.83 6.75 -52.49 -0.35 2.48 16 33 H 0.11 2.10 8.06 -52.49 -0.42 1.67 16 34 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16 35 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.13 3.33 6.35 -52.49 -0.33 3.00 16 38 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 39 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 40 H 0.40 4.72 8.18 -40.82 -0.33 4.38 16 41 H 0.39 4.49 8.84 -40.82 -0.36 4.13 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -27.78 345.46 -9.63 -37.42 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -4.52 Total: 17.60 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -5.96 Total: -27.11 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.86 Total: -40.23 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.19 Total: -4.89 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.78 -9.63 -37.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244893081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.735 kcal (2) G-P(sol) polarization free energy of solvation -27.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds