Wall clock time and date at job start Tue Mar 31 2020 13:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35892 * 117.00084 * 2 1 4 4 C 1.38738 * 119.93526 * 359.97438 * 3 2 1 5 5 C 1.37890 * 120.16284 * 180.02562 * 4 3 2 6 6 C 1.39673 * 120.04072 * 359.96034 * 5 4 3 7 7 C 1.47816 * 120.06273 * 180.02562 * 6 5 4 8 8 N 1.31634 * 119.45127 * 136.24317 * 7 6 5 9 9 C 1.33645 * 121.74085 * 180.02562 * 8 7 6 10 10 C 1.40494 * 120.98545 * 179.97438 * 9 8 7 11 11 C 1.36238 * 119.70080 * 180.02562 * 10 9 8 12 12 C 1.39162 * 121.76208 * 359.97134 * 11 10 9 13 13 C 1.36130 * 121.46700 * 0.02681 * 12 11 10 14 14 C 1.40794 * 119.46613 * 359.75007 * 13 12 11 15 15 C 1.40010 * 121.39187 * 179.70283 * 14 13 12 16 16 C 1.40373 * 117.97090 * 180.27343 * 15 14 13 17 17 C 1.40825 * 120.41043 * 180.27026 * 16 15 14 18 18 H 1.07997 * 119.99616 * 151.83518 * 17 16 15 19 19 C 1.40079 * 120.00054 * 331.83885 * 17 16 15 20 20 N 1.30772 * 120.00077 * 346.46777 * 19 17 16 21 21 Si 1.86800 * 119.99955 * 166.46514 * 19 17 16 22 22 H 1.48503 * 109.47090 * 89.99956 * 21 19 17 23 23 H 1.48496 * 109.47470 * 210.00108 * 21 19 17 24 24 H 1.48500 * 109.47332 * 330.00341 * 21 19 17 25 25 C 1.39655 * 119.87125 * 0.29518 * 6 5 4 26 26 C 1.38351 * 119.83938 * 359.49611 * 25 6 5 27 27 N 1.39961 * 120.02096 * 180.23149 * 26 25 6 28 28 H 1.09008 * 109.46830 * 60.00750 * 1 2 3 29 29 H 1.09000 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47256 * 300.00868 * 1 2 3 31 31 H 1.07997 * 119.91982 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.97787 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.14604 * 0.03629 * 10 9 8 34 34 H 1.08003 * 119.11640 * 179.97438 * 11 10 9 35 35 H 1.07999 * 119.27096 * 180.02562 * 12 11 10 36 36 H 1.07992 * 120.26678 * 180.02562 * 13 12 11 37 37 H 1.08002 * 121.01021 * 0.54557 * 15 14 13 38 38 H 0.97002 * 119.99901 * 179.97438 * 20 19 17 39 39 H 1.08000 * 120.07968 * 179.70221 * 25 6 5 40 40 H 0.97005 * 119.99667 * 180.22995 * 27 26 25 41 41 H 0.96994 * 120.00390 * 0.22954 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2890 2.3735 -0.0005 5 6 1.9102 3.6046 -0.0011 6 6 3.3046 3.6842 -0.0002 7 6 3.9710 5.0036 -0.0002 8 7 5.0013 5.2084 0.7931 9 6 5.6373 6.3832 0.8304 10 6 6.7352 6.5845 1.6837 11 6 7.3640 7.7929 1.7010 12 6 6.9496 8.8460 0.8911 13 6 5.8933 8.7165 0.0422 14 6 5.2050 7.4901 -0.0249 15 6 4.1096 7.3144 -0.8790 16 6 3.4727 6.0635 -0.8841 17 6 2.3695 5.8286 -1.7273 18 1 2.1648 4.8297 -2.0829 19 6 1.5379 6.8907 -2.1049 20 7 1.6156 8.0364 -1.4791 21 14 0.3180 6.6706 -3.5023 22 1 -0.9736 6.1788 -2.9590 23 1 0.1048 7.9730 -4.1832 24 1 0.8528 5.6849 -4.4757 25 6 4.0681 2.5148 -0.0051 26 6 3.4395 1.2823 -0.0002 27 7 4.2010 0.1080 -0.0001 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2107 2.3143 -0.0005 32 1 1.3180 4.5078 -0.0019 33 1 7.0791 5.7848 2.3229 34 1 8.2067 7.9375 2.3609 35 1 7.4777 9.7869 0.9370 36 1 5.5885 9.5464 -0.5780 37 1 3.7678 8.1155 -1.5177 38 1 1.0400 8.7720 -1.7409 39 1 5.1465 2.5725 -0.0093 40 1 3.7599 -0.7560 0.0000 41 1 5.1696 0.1580 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244893081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:35 Heat of formation + Delta-G solvation = 12.898217 kcal Electronic energy + Delta-G solvation = -25709.922416 eV Core-core repulsion = 22132.300440 eV Total energy + Delta-G solvation = -3577.621976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15426 -40.51048 -38.55429 -37.34091 -35.92328 -35.25840 -33.40733 -32.05020 -31.09998 -29.93238 -29.37494 -27.85546 -27.36327 -24.71278 -23.69368 -22.98245 -22.33782 -21.94804 -19.71036 -18.98668 -18.22848 -18.04636 -17.62323 -17.32783 -16.51976 -16.49876 -16.23751 -15.87089 -15.17829 -15.07079 -14.95658 -14.71813 -14.64945 -14.30033 -14.06544 -13.81257 -13.65254 -13.46190 -13.04959 -12.89819 -12.71340 -12.58464 -12.37119 -12.24939 -12.03054 -11.86027 -11.82606 -11.60268 -11.36986 -11.20099 -10.71828 -10.08224 -9.56340 -9.02604 -8.82928 -8.69549 -8.04956 -6.34155 -0.24174 0.28737 0.61881 0.78607 1.35183 1.39486 1.52345 1.71054 2.14965 2.24553 2.45543 2.92356 3.01779 3.07737 3.59663 3.76202 4.00079 4.03789 4.22996 4.28071 4.36760 4.49670 4.54456 4.56886 4.62840 4.64116 4.66706 4.76546 4.81936 4.86434 5.02878 5.11827 5.15906 5.28678 5.38418 5.53463 5.58207 5.70837 5.77574 5.83716 5.89556 6.00120 6.01271 6.26361 6.34293 6.51195 6.69467 6.76031 6.79375 7.13045 7.46368 8.20857 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009898 B = 0.005205 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.268143 B = 5378.508305 C = 7876.840789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.329 6.329 3 C 0.046 3.954 4 C -0.164 4.164 5 C -0.113 4.113 6 C -0.016 4.016 7 C 0.109 3.891 8 N -0.472 5.472 9 C -0.003 4.003 10 C -0.077 4.077 11 C -0.163 4.163 12 C -0.104 4.104 13 C -0.151 4.151 14 C -0.069 4.069 15 C -0.202 4.202 16 C 0.051 3.949 17 C -0.439 4.439 18 H 0.092 0.908 19 C 0.035 3.965 20 N -0.807 5.807 21 Si 0.979 3.021 22 H -0.254 1.254 23 H -0.267 1.267 24 H -0.257 1.257 25 C -0.150 4.150 26 C 0.185 3.815 27 N -0.866 5.866 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.058 0.942 31 H 0.151 0.849 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.293 0.707 39 H 0.120 0.880 40 H 0.407 0.593 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 -9.256 0.816 9.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.243 6.243 3 C -0.003 4.003 4 C -0.183 4.183 5 C -0.135 4.135 6 C -0.018 4.018 7 C -0.047 4.047 8 N -0.179 5.179 9 C -0.125 4.125 10 C -0.095 4.095 11 C -0.183 4.183 12 C -0.122 4.122 13 C -0.171 4.171 14 C -0.071 4.071 15 C -0.228 4.228 16 C 0.046 3.954 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.182 4.182 20 N -0.431 5.431 21 Si 0.799 3.201 22 H -0.178 1.178 23 H -0.192 1.192 24 H -0.181 1.181 25 C -0.175 4.175 26 C 0.081 3.919 27 N -0.409 5.409 28 H 0.076 0.924 29 H 0.140 0.860 30 H 0.077 0.923 31 H 0.168 0.832 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.237 0.763 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.874 -9.752 1.437 9.896 hybrid contribution -0.845 1.030 -1.083 1.717 sum -1.719 -8.721 0.354 8.896 Atomic orbital electron populations 1.23261 0.76930 1.05258 1.01840 1.85867 1.22893 1.25703 1.89887 1.18493 0.90277 0.85184 1.06301 1.21063 1.00562 0.90721 1.05918 1.20912 0.93136 0.97687 1.01746 1.18159 0.93025 0.89934 1.00693 1.21494 0.94169 0.94533 0.94495 1.67499 1.07605 1.22314 1.20484 1.19872 1.00503 0.89762 1.02394 1.20783 0.93495 0.98292 0.96974 1.20778 1.02369 0.92733 1.02383 1.20960 0.96140 0.99706 0.95413 1.21067 0.98246 0.95815 1.01925 1.20021 0.95881 0.94814 0.96370 1.21436 0.97402 0.99553 1.04390 1.19549 0.92995 0.91459 0.91438 1.19787 1.07369 0.96440 1.23162 0.89018 1.26836 0.99545 0.93617 0.98210 1.69836 1.34154 1.03918 1.35209 0.85228 0.78028 0.79200 0.77685 1.17834 1.19156 1.18099 1.20424 0.99201 0.89608 1.08233 1.16912 0.87892 0.87804 0.99339 1.42103 1.08307 1.04520 1.85975 0.92401 0.85978 0.92341 0.83194 0.86499 0.85405 0.83358 0.83619 0.86287 0.86561 0.89566 0.86177 0.76329 0.76677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.50 16 2 O -0.33 -8.52 9.73 -92.33 -0.90 -9.42 16 3 C 0.05 1.47 6.71 22.70 0.15 1.62 16 4 C -0.16 -5.43 9.01 22.31 0.20 -5.23 16 5 C -0.11 -4.66 7.83 22.53 0.18 -4.48 16 6 C -0.02 -0.73 5.27 -20.05 -0.11 -0.84 16 7 C 0.11 5.57 6.54 43.93 0.29 5.86 16 8 N -0.47 -24.11 10.06 -169.22 -1.70 -25.81 16 9 C 0.00 -0.17 6.75 41.55 0.28 0.11 16 10 C -0.08 -3.13 9.99 22.35 0.22 -2.90 16 11 C -0.16 -5.56 9.90 22.03 0.22 -5.34 16 12 C -0.10 -3.63 9.91 22.00 0.22 -3.41 16 13 C -0.15 -6.40 9.80 22.40 0.22 -6.18 16 14 C -0.07 -3.45 5.87 -20.09 -0.12 -3.57 16 15 C -0.20 -10.93 8.52 23.22 0.20 -10.74 16 16 C 0.05 2.72 5.66 -19.91 -0.11 2.61 16 17 C -0.44 -22.17 6.76 23.35 0.16 -22.02 16 18 H 0.09 4.48 6.50 -2.91 -0.02 4.46 16 19 C 0.04 1.67 5.21 85.30 0.44 2.11 16 20 N -0.81 -40.06 10.97 21.85 0.24 -39.82 16 21 Si 0.98 35.59 29.58 68.60 2.03 37.62 16 22 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 23 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 24 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 25 C -0.15 -5.89 9.48 22.64 0.21 -5.67 16 26 C 0.18 6.11 6.76 38.18 0.26 6.36 16 27 N -0.87 -21.55 9.09 -51.14 -0.46 -22.02 16 28 H 0.06 0.99 7.65 -2.38 -0.02 0.97 16 29 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 0.98 7.65 -2.39 -0.02 0.97 16 31 H 0.15 4.00 6.27 -2.91 -0.02 3.98 16 32 H 0.12 5.18 6.75 -2.91 -0.02 5.16 16 33 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 34 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 36 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 37 H 0.12 6.42 6.35 -2.91 -0.02 6.40 16 38 H 0.29 13.10 8.29 -92.71 -0.77 12.33 16 39 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 40 H 0.41 8.67 8.18 -92.70 -0.76 7.91 16 41 H 0.40 8.62 8.84 -92.71 -0.82 7.80 16 Total: -1.00 -64.73 345.46 2.75 -61.98 By element: Atomic # 1 Polarization: 48.16 SS G_CDS: -0.48 Total: 47.68 kcal Atomic # 6 Polarization: -54.23 SS G_CDS: 4.03 Total: -50.21 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -1.93 Total: -87.65 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.90 Total: -9.42 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Total: -64.73 2.75 -61.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244893081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.874 kcal (2) G-P(sol) polarization free energy of solvation -64.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds