Wall clock time and date at job start Tue Mar 31 2020 13:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36007 * 117.00497 * 2 1 4 4 C 1.38091 * 120.00902 * 0.24720 * 3 2 1 5 5 C 1.39736 * 119.87525 * 180.21233 * 4 3 2 6 6 C 1.47757 * 120.04940 * 179.79211 * 5 4 3 7 7 N 1.31659 * 119.45772 * 315.96664 * 6 5 4 8 8 C 1.33644 * 121.73963 * 180.02562 * 7 6 5 9 9 C 1.40488 * 120.98443 * 179.97438 * 8 7 6 10 10 C 1.36240 * 119.70456 * 180.02562 * 9 8 7 11 11 C 1.39175 * 121.75863 * 359.97438 * 10 9 8 12 12 C 1.36120 * 121.46518 * 0.04275 * 11 10 9 13 13 C 1.40795 * 119.47241 * 359.68155 * 12 11 10 14 14 C 1.40006 * 121.39440 * 179.67974 * 13 12 11 15 15 C 1.40366 * 117.98090 * 180.32034 * 14 13 12 16 16 C 1.40807 * 120.41577 * 180.29316 * 15 14 13 17 17 H 1.08004 * 119.99963 * 151.81204 * 16 15 14 18 18 C 1.40075 * 120.00347 * 331.81412 * 16 15 14 19 19 N 1.30781 * 119.99563 * 346.51126 * 18 16 15 20 20 Si 1.86795 * 120.00383 * 166.50769 * 18 16 15 21 21 H 1.48501 * 109.46928 * 60.00196 * 20 18 16 22 22 H 1.48500 * 109.47412 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47432 * 300.00481 * 20 18 16 24 24 C 1.39711 * 119.89748 * 359.51735 * 5 4 3 25 25 C 1.37790 * 120.01837 * 0.25405 * 24 5 4 26 26 C 1.39002 * 120.12419 * 359.97438 * 25 24 5 27 27 N 1.39518 * 119.94687 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47388 * 300.00538 * 1 2 3 30 30 H 1.08999 * 109.46836 * 60.00200 * 1 2 3 31 31 H 1.08002 * 120.05845 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.15417 * 0.04418 * 9 8 7 33 33 H 1.08004 * 119.12100 * 179.97438 * 10 9 8 34 34 H 1.07998 * 119.26865 * 180.02562 * 11 10 9 35 35 H 1.08001 * 120.26612 * 179.97438 * 12 11 10 36 36 H 1.07998 * 121.00765 * 0.59451 * 14 13 12 37 37 H 0.96997 * 119.99360 * 179.97438 * 19 18 16 38 38 H 1.08002 * 119.99065 * 180.22796 * 24 5 4 39 39 H 1.07998 * 119.93803 * 180.02562 * 25 24 5 40 40 H 0.97002 * 119.99833 * 0.02562 * 27 26 25 41 41 H 0.96993 * 119.99647 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2947 2.3701 0.0052 5 6 1.9321 3.6136 0.0007 6 6 1.1314 4.8554 0.0015 7 7 0.0849 4.9516 -0.7916 8 6 -0.6707 6.0533 -0.8280 9 6 -1.7838 6.1391 -1.6809 10 6 -2.5358 7.2750 -1.6974 11 6 -2.2337 8.3653 -0.8869 12 6 -1.1692 8.3468 -0.0387 13 6 -0.3568 7.1988 0.0284 14 6 0.7517 7.1387 0.8815 15 6 1.5161 5.9614 0.8860 16 6 2.6381 5.8432 1.7286 17 1 2.9463 4.8711 2.0842 18 6 3.3544 6.9863 2.1057 19 7 3.1565 8.1178 1.4804 20 14 4.5922 6.8947 3.5017 21 1 5.6471 5.9057 3.1637 22 1 5.2118 8.2293 3.7023 23 1 3.9024 6.4761 4.7483 24 6 3.3276 3.6809 0.0012 25 6 4.0736 2.5224 0.0008 26 6 3.4404 1.2849 0.0005 27 7 4.1994 0.1142 -0.0004 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2161 2.3149 0.0096 32 1 -2.0424 5.3082 -2.3205 33 1 -3.3892 7.3309 -2.3570 34 1 -2.8575 9.2457 -0.9321 35 1 -0.9523 9.2041 0.5814 36 1 1.0082 7.9711 1.5200 37 1 3.6522 8.9095 1.7419 38 1 3.8218 4.6412 0.0014 39 1 5.1522 2.5759 0.0016 40 1 5.1681 0.1643 -0.0005 41 1 3.7583 -0.7496 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245499680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:39 Heat of formation + Delta-G solvation = 27.746750 kcal Electronic energy + Delta-G solvation = -25832.152917 eV Core-core repulsion = 22255.174822 eV Total energy + Delta-G solvation = -3576.978095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.79139 -38.86727 -37.13442 -35.93877 -34.27737 -33.83392 -31.67950 -30.01140 -29.80344 -29.03288 -27.78212 -26.61052 -25.61521 -23.03461 -22.06934 -21.54251 -20.84237 -20.40520 -18.11610 -17.55777 -16.77489 -16.30758 -16.08085 -16.02606 -15.39396 -15.19413 -14.81329 -14.51920 -13.70370 -13.49928 -13.44667 -13.22351 -13.03960 -12.74615 -12.59964 -12.45100 -12.03156 -11.83852 -11.65415 -11.37931 -11.19144 -10.94429 -10.86689 -10.79767 -10.68888 -10.63066 -10.44941 -9.97134 -9.82917 -9.52607 -8.98490 -8.28004 -8.04426 -7.49224 -7.20812 -7.02035 -6.61197 -4.53302 1.42474 1.95229 2.03236 2.28998 2.90114 2.94587 2.97734 3.46277 3.59039 3.73437 3.87454 4.23460 4.44418 4.67482 5.19687 5.26642 5.40098 5.42069 5.51378 5.64617 5.66347 5.69644 5.79317 5.91206 5.97554 6.10331 6.18827 6.28134 6.30868 6.44923 6.49143 6.72804 6.78523 6.87001 6.95661 7.06688 7.24856 7.28770 7.37527 7.38164 7.44751 7.50594 7.72567 7.77918 7.92939 8.01217 8.08482 8.30157 8.47801 8.55312 9.26224 9.89613 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008904 B = 0.005782 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.058871 B = 4841.090945 C = 7584.645668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.329 6.329 3 C 0.034 3.966 4 C -0.134 4.134 5 C -0.024 4.024 6 C 0.127 3.873 7 N -0.463 5.463 8 C 0.027 3.973 9 C -0.061 4.061 10 C -0.179 4.179 11 C -0.119 4.119 12 C -0.130 4.130 13 C -0.046 4.046 14 C -0.174 4.174 15 C 0.077 3.923 16 C -0.426 4.426 17 H 0.092 0.908 18 C 0.071 3.929 19 N -0.775 5.775 20 Si 0.912 3.088 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.066 4.066 25 C -0.177 4.177 26 C 0.186 3.814 27 N -0.879 5.879 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.287 0.713 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.393 0.607 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 -8.077 -0.471 8.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.244 6.244 3 C -0.013 4.013 4 C -0.154 4.154 5 C -0.027 4.027 6 C -0.028 4.028 7 N -0.169 5.169 8 C -0.096 4.096 9 C -0.080 4.080 10 C -0.200 4.200 11 C -0.138 4.138 12 C -0.149 4.149 13 C -0.049 4.049 14 C -0.199 4.199 15 C 0.072 3.928 16 C -0.454 4.454 17 H 0.110 0.890 18 C -0.150 4.150 19 N -0.398 5.398 20 Si 0.735 3.265 21 H -0.184 1.184 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.085 4.085 25 C -0.200 4.200 26 C 0.083 3.917 27 N -0.420 5.420 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.098 0.902 38 H 0.156 0.844 39 H 0.141 0.859 40 H 0.220 0.780 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.042 -8.570 -1.081 8.638 hybrid contribution 0.670 0.786 1.110 1.517 sum 0.628 -7.783 0.030 7.809 Atomic orbital electron populations 1.22900 0.79003 1.02788 1.01503 1.85860 1.20797 1.27055 1.90656 1.18194 0.90174 0.84439 1.08530 1.21091 0.99529 0.90884 1.03889 1.18021 0.92202 0.90406 1.02067 1.21055 0.93383 0.93884 0.94502 1.67455 1.04858 1.24381 1.20248 1.19312 0.98240 0.90699 1.01303 1.20477 0.93460 0.97098 0.96992 1.20247 1.01749 0.94773 1.03192 1.20459 0.97831 0.97848 0.97627 1.20852 0.96348 0.97295 1.00388 1.19712 0.95513 0.93393 0.96255 1.21468 0.94645 1.00702 1.03065 1.19208 0.92409 0.90653 0.90563 1.19642 1.08267 0.94784 1.22704 0.88990 1.26027 0.97959 0.94582 0.96392 1.69768 1.34974 1.01244 1.33828 0.86270 0.80217 0.78682 0.81297 1.18420 1.20088 1.18521 1.21170 0.92728 0.98326 0.96323 1.20320 0.99197 0.90077 1.10381 1.17111 0.87267 0.87645 0.99651 1.42109 1.07780 1.05490 1.86639 0.89087 0.93013 0.92828 0.85640 0.87065 0.87810 0.87944 0.87178 0.85130 0.90162 0.84376 0.85948 0.77952 0.77465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.33 -5.01 9.73 -19.76 -0.19 -5.20 16 3 C 0.03 0.59 6.70 -39.13 -0.26 0.33 16 4 C -0.13 -2.56 8.62 -39.08 -0.34 -2.90 16 5 C -0.02 -0.51 5.27 -104.90 -0.55 -1.06 16 6 C 0.13 3.06 6.54 -80.61 -0.53 2.53 16 7 N -0.46 -11.22 10.06 -4.84 -0.05 -11.27 16 8 C 0.03 0.64 6.75 -82.93 -0.56 0.08 16 9 C -0.06 -1.27 9.98 -39.45 -0.39 -1.67 16 10 C -0.18 -3.33 9.90 -39.95 -0.40 -3.72 16 11 C -0.12 -2.23 9.91 -39.99 -0.40 -2.63 16 12 C -0.13 -2.73 9.80 -39.38 -0.39 -3.11 16 13 C -0.05 -1.11 5.87 -104.97 -0.62 -1.73 16 14 C -0.17 -4.37 8.51 -38.12 -0.32 -4.70 16 15 C 0.08 1.92 5.66 -104.69 -0.59 1.33 16 16 C -0.43 -10.10 6.76 -37.92 -0.26 -10.36 16 17 H 0.09 2.11 6.50 -52.48 -0.34 1.77 16 18 C 0.07 1.60 5.21 -17.31 -0.09 1.51 16 19 N -0.77 -18.30 10.97 55.55 0.61 -17.69 16 20 Si 0.91 17.06 29.58 -169.99 -5.03 12.03 16 21 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 22 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 C -0.07 -1.28 7.83 -39.20 -0.31 -1.59 16 25 C -0.18 -2.94 9.87 -39.46 -0.39 -3.33 16 26 C 0.19 3.00 6.77 -83.58 -0.57 2.44 16 27 N -0.88 -10.81 9.07 32.53 0.29 -10.52 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 30 H 0.05 0.66 7.67 -51.93 -0.40 0.27 16 31 H 0.13 2.36 6.28 -52.49 -0.33 2.03 16 32 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16 34 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.13 3.33 6.35 -52.49 -0.33 3.00 16 37 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 38 H 0.14 2.83 6.75 -52.49 -0.35 2.48 16 39 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.39 3.86 8.84 -40.82 -0.36 3.50 16 41 H 0.40 4.52 8.17 -40.82 -0.33 4.18 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -27.83 345.43 -9.64 -37.47 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -4.52 Total: 17.14 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -5.96 Total: -27.17 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.86 Total: -39.48 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.19 Total: -5.20 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.83 -9.64 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245499680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.220 kcal (2) G-P(sol) polarization free energy of solvation -27.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds