Wall clock time and date at job start Tue Mar 31 2020 13:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36007 * 117.00497 * 2 1 4 4 C 1.38091 * 120.00902 * 0.24720 * 3 2 1 5 5 C 1.39736 * 119.87525 * 180.21233 * 4 3 2 6 6 C 1.47757 * 120.04940 * 179.79211 * 5 4 3 7 7 N 1.31659 * 119.45772 * 315.96664 * 6 5 4 8 8 C 1.33644 * 121.73963 * 180.02562 * 7 6 5 9 9 C 1.40488 * 120.98443 * 179.97438 * 8 7 6 10 10 C 1.36240 * 119.70456 * 180.02562 * 9 8 7 11 11 C 1.39175 * 121.75863 * 359.97438 * 10 9 8 12 12 C 1.36120 * 121.46518 * 0.04275 * 11 10 9 13 13 C 1.40795 * 119.47241 * 359.68155 * 12 11 10 14 14 C 1.40006 * 121.39440 * 179.67974 * 13 12 11 15 15 C 1.40366 * 117.98090 * 180.32034 * 14 13 12 16 16 C 1.40807 * 120.41577 * 180.29316 * 15 14 13 17 17 H 1.08004 * 119.99963 * 151.81204 * 16 15 14 18 18 C 1.40075 * 120.00347 * 331.81412 * 16 15 14 19 19 N 1.30781 * 119.99563 * 346.51126 * 18 16 15 20 20 Si 1.86795 * 120.00383 * 166.50769 * 18 16 15 21 21 H 1.48501 * 109.46928 * 60.00196 * 20 18 16 22 22 H 1.48500 * 109.47412 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47432 * 300.00481 * 20 18 16 24 24 C 1.39711 * 119.89748 * 359.51735 * 5 4 3 25 25 C 1.37790 * 120.01837 * 0.25405 * 24 5 4 26 26 C 1.39002 * 120.12419 * 359.97438 * 25 24 5 27 27 N 1.39518 * 119.94687 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47388 * 300.00538 * 1 2 3 30 30 H 1.08999 * 109.46836 * 60.00200 * 1 2 3 31 31 H 1.08002 * 120.05845 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.15417 * 0.04418 * 9 8 7 33 33 H 1.08004 * 119.12100 * 179.97438 * 10 9 8 34 34 H 1.07998 * 119.26865 * 180.02562 * 11 10 9 35 35 H 1.08001 * 120.26612 * 179.97438 * 12 11 10 36 36 H 1.07998 * 121.00765 * 0.59451 * 14 13 12 37 37 H 0.96997 * 119.99360 * 179.97438 * 19 18 16 38 38 H 1.08002 * 119.99065 * 180.22796 * 24 5 4 39 39 H 1.07998 * 119.93803 * 180.02562 * 25 24 5 40 40 H 0.97002 * 119.99833 * 0.02562 * 27 26 25 41 41 H 0.96993 * 119.99647 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2947 2.3701 0.0052 5 6 1.9321 3.6136 0.0007 6 6 1.1314 4.8554 0.0015 7 7 0.0849 4.9516 -0.7916 8 6 -0.6707 6.0533 -0.8280 9 6 -1.7838 6.1391 -1.6809 10 6 -2.5358 7.2750 -1.6974 11 6 -2.2337 8.3653 -0.8869 12 6 -1.1692 8.3468 -0.0387 13 6 -0.3568 7.1988 0.0284 14 6 0.7517 7.1387 0.8815 15 6 1.5161 5.9614 0.8860 16 6 2.6381 5.8432 1.7286 17 1 2.9463 4.8711 2.0842 18 6 3.3544 6.9863 2.1057 19 7 3.1565 8.1178 1.4804 20 14 4.5922 6.8947 3.5017 21 1 5.6471 5.9057 3.1637 22 1 5.2118 8.2293 3.7023 23 1 3.9024 6.4761 4.7483 24 6 3.3276 3.6809 0.0012 25 6 4.0736 2.5224 0.0008 26 6 3.4404 1.2849 0.0005 27 7 4.1994 0.1142 -0.0004 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2161 2.3149 0.0096 32 1 -2.0424 5.3082 -2.3205 33 1 -3.3892 7.3309 -2.3570 34 1 -2.8575 9.2457 -0.9321 35 1 -0.9523 9.2041 0.5814 36 1 1.0082 7.9711 1.5200 37 1 3.6522 8.9095 1.7419 38 1 3.8218 4.6412 0.0014 39 1 5.1522 2.5759 0.0016 40 1 5.1681 0.1643 -0.0005 41 1 3.7583 -0.7496 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245499680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:38 Heat of formation + Delta-G solvation = 12.238729 kcal Electronic energy + Delta-G solvation = -25832.825395 eV Core-core repulsion = 22255.174822 eV Total energy + Delta-G solvation = -3577.650573 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.17212 -40.48312 -38.49329 -37.45812 -35.96879 -35.20359 -33.40051 -31.59079 -31.24881 -30.59656 -29.08936 -27.88430 -27.34066 -24.57229 -23.68658 -22.99131 -22.37051 -22.04575 -19.74957 -18.98889 -18.16671 -17.66504 -17.63759 -17.49765 -16.73461 -16.56148 -16.35144 -15.79574 -15.21688 -15.06100 -14.89416 -14.78297 -14.61375 -14.24226 -14.05933 -13.82988 -13.67210 -13.44973 -13.05653 -12.91836 -12.74130 -12.42403 -12.34895 -12.18135 -12.12855 -11.98105 -11.92697 -11.57000 -11.33815 -11.18917 -10.71816 -10.06220 -9.44808 -9.14160 -8.89190 -8.71778 -7.96646 -6.33133 -0.21693 0.29918 0.60436 0.78273 1.37486 1.41187 1.51042 1.71820 2.15938 2.25191 2.43041 2.92987 3.02360 3.09954 3.61124 3.75887 3.99819 4.03478 4.19668 4.27894 4.40104 4.40884 4.48554 4.55679 4.61996 4.64770 4.71409 4.72710 4.78808 4.89422 4.99280 5.11848 5.19386 5.30531 5.36887 5.49663 5.58580 5.72976 5.77900 5.86407 5.89822 6.00361 6.02010 6.26809 6.30676 6.51828 6.70397 6.76285 6.78612 7.13854 7.47640 8.21757 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008904 B = 0.005782 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.058871 B = 4841.090945 C = 7584.645668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.327 6.327 3 C 0.032 3.968 4 C -0.140 4.140 5 C -0.058 4.058 6 C 0.116 3.884 7 N -0.477 5.477 8 C -0.003 4.003 9 C -0.078 4.078 10 C -0.163 4.163 11 C -0.105 4.105 12 C -0.151 4.151 13 C -0.070 4.070 14 C -0.203 4.203 15 C 0.049 3.951 16 C -0.440 4.440 17 H 0.092 0.908 18 C 0.036 3.964 19 N -0.808 5.808 20 Si 0.979 3.021 21 H -0.249 1.249 22 H -0.268 1.268 23 H -0.262 1.262 24 C -0.075 4.075 25 C -0.173 4.173 26 C 0.198 3.802 27 N -0.859 5.859 28 H 0.128 0.872 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.293 0.707 38 H 0.119 0.881 39 H 0.154 0.846 40 H 0.409 0.591 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 -9.509 -0.803 9.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.242 6.242 3 C -0.016 4.016 4 C -0.160 4.160 5 C -0.061 4.061 6 C -0.040 4.040 7 N -0.185 5.185 8 C -0.125 4.125 9 C -0.097 4.097 10 C -0.183 4.183 11 C -0.123 4.123 12 C -0.170 4.170 13 C -0.072 4.072 14 C -0.229 4.229 15 C 0.044 3.956 16 C -0.469 4.469 17 H 0.110 0.890 18 C -0.182 4.182 19 N -0.432 5.432 20 Si 0.799 3.201 21 H -0.172 1.172 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.095 4.095 25 C -0.196 4.196 26 C 0.092 3.908 27 N -0.401 5.401 28 H 0.146 0.854 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.171 0.829 40 H 0.239 0.761 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.070 -10.036 -1.430 10.138 hybrid contribution 0.537 1.146 1.094 1.673 sum 0.468 -8.890 -0.336 8.909 Atomic orbital electron populations 1.23154 0.77437 1.05078 1.01101 1.85862 1.22343 1.25675 1.90313 1.18266 0.90836 0.84506 1.07978 1.21023 0.99462 0.91004 1.04531 1.18047 0.92802 0.90061 1.05183 1.21502 0.93573 0.94854 0.94032 1.67517 1.05420 1.24852 1.20667 1.19879 0.99516 0.90753 1.02321 1.20768 0.92983 0.98845 0.97054 1.20774 1.01791 0.93317 1.02377 1.20950 0.96675 0.99211 0.95487 1.21061 0.97268 0.96783 1.01915 1.20021 0.95906 0.94837 0.96445 1.21422 0.96155 1.00840 1.04461 1.19565 0.93253 0.91279 0.91471 1.19761 1.08460 0.95371 1.23266 0.88962 1.26839 0.99418 0.93753 0.98176 1.69838 1.36141 1.02021 1.35174 0.85266 0.77930 0.79126 0.77769 1.17247 1.19229 1.18630 1.21049 0.92260 0.98734 0.97428 1.20522 1.00495 0.89175 1.09412 1.17185 0.87200 0.88668 0.97759 1.42068 1.08565 1.04583 1.84888 0.85400 0.93447 0.93285 0.86204 0.85484 0.83393 0.83658 0.86339 0.86629 0.89589 0.86304 0.82882 0.76080 0.76472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.81 113.37 1.11 1.74 16 2 O -0.33 -9.40 9.73 -93.62 -0.91 -10.31 16 3 C 0.03 1.09 6.70 22.56 0.15 1.24 16 4 C -0.14 -5.52 8.62 22.60 0.19 -5.33 16 5 C -0.06 -2.58 5.27 -20.04 -0.11 -2.69 16 6 C 0.12 5.96 6.54 43.92 0.29 6.25 16 7 N -0.48 -24.46 10.06 -169.23 -1.70 -26.17 16 8 C 0.00 -0.15 6.75 41.55 0.28 0.13 16 9 C -0.08 -3.18 9.98 22.35 0.22 -2.96 16 10 C -0.16 -5.59 9.90 22.03 0.22 -5.37 16 11 C -0.11 -3.69 9.91 22.00 0.22 -3.47 16 12 C -0.15 -6.42 9.80 22.40 0.22 -6.20 16 13 C -0.07 -3.53 5.87 -20.09 -0.12 -3.65 16 14 C -0.20 -11.02 8.51 23.22 0.20 -10.82 16 15 C 0.05 2.65 5.66 -19.91 -0.11 2.54 16 16 C -0.44 -22.19 6.76 23.34 0.16 -22.03 16 17 H 0.09 4.48 6.50 -2.91 -0.02 4.46 16 18 C 0.04 1.68 5.21 85.30 0.44 2.12 16 19 N -0.81 -40.17 10.97 21.85 0.24 -39.93 16 20 Si 0.98 35.58 29.58 68.60 2.03 37.61 16 21 H -0.25 -8.53 7.11 99.48 0.71 -7.83 16 22 H -0.27 -9.28 7.11 99.48 0.71 -8.58 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 24 C -0.07 -3.02 7.83 22.52 0.18 -2.85 16 25 C -0.17 -5.57 9.87 22.35 0.22 -5.35 16 26 C 0.20 6.01 6.77 38.43 0.26 6.27 16 27 N -0.86 -18.40 9.07 -51.00 -0.46 -18.86 16 28 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 1.15 7.65 -2.39 -0.02 1.13 16 30 H 0.05 1.19 7.67 -2.39 -0.02 1.17 16 31 H 0.12 4.72 6.28 -2.91 -0.02 4.71 16 32 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 33 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 34 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 35 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 36 H 0.12 6.40 6.35 -2.91 -0.02 6.38 16 37 H 0.29 13.17 8.29 -92.71 -0.77 12.40 16 38 H 0.12 5.19 6.75 -2.91 -0.02 5.17 16 39 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 40 H 0.41 6.50 8.84 -92.71 -0.82 5.68 16 41 H 0.41 7.84 8.17 -92.71 -0.76 7.08 16 Total: -1.00 -65.09 345.43 2.75 -62.35 By element: Atomic # 1 Polarization: 46.21 SS G_CDS: -0.47 Total: 45.73 kcal Atomic # 6 Polarization: -54.45 SS G_CDS: 4.03 Total: -50.42 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -1.93 Total: -84.96 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.91 Total: -10.31 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Total: -65.09 2.75 -62.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245499680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.586 kcal (2) G-P(sol) polarization free energy of solvation -65.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds