Wall clock time and date at job start Tue Mar 31 2020 13:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35813 * 126.05347 * 2 1 4 4 C 1.35756 * 107.56502 * 180.11091 * 3 2 1 5 5 N 1.40766 * 126.08146 * 179.89889 * 4 3 2 6 6 C 1.34772 * 120.00072 * 359.69422 * 5 4 3 7 7 O 1.21307 * 120.00125 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99971 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.46817 * 319.98961 * 8 6 5 10 10 N 1.46910 * 109.46728 * 199.99907 * 8 6 5 11 11 C 1.52992 * 109.47798 * 79.99728 * 8 6 5 12 12 C 1.52997 * 109.47482 * 185.00026 * 11 8 6 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.40256 * 107.83959 * 359.63860 * 4 3 2 22 22 C 1.50695 * 125.83545 * 180.20366 * 21 4 3 23 23 F 1.39897 * 109.47475 * 89.99814 * 22 21 4 24 24 F 1.39898 * 109.47277 * 210.00256 * 22 21 4 25 25 F 1.39899 * 109.47128 * 329.99774 * 22 21 4 26 26 N 1.30834 * 108.33437 * 0.22582 * 21 4 3 27 27 H 1.08992 * 109.47364 * 270.26876 * 1 2 3 28 28 H 1.08999 * 109.46947 * 30.26930 * 1 2 3 29 29 H 1.08999 * 109.46632 * 150.26721 * 1 2 3 30 30 H 1.08002 * 126.22021 * 359.97438 * 3 2 1 31 31 H 0.97003 * 119.99528 * 179.69370 * 5 4 3 32 32 H 1.00894 * 110.99558 * 176.04306 * 10 8 6 33 33 H 1.00892 * 110.99957 * 299.99600 * 10 8 6 34 34 H 1.09002 * 109.47103 * 64.99779 * 11 8 6 35 35 H 1.08998 * 109.46862 * 305.00591 * 11 8 6 36 36 H 1.09002 * 109.47153 * 59.99783 * 12 11 8 37 37 H 1.09001 * 109.46832 * 299.99974 * 12 11 8 38 38 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2642 1.0980 0.0000 4 6 3.5517 0.6675 -0.0025 5 7 4.6987 1.4835 -0.0054 6 6 4.5712 2.8252 -0.0121 7 8 3.4680 3.3296 -0.0161 8 6 5.7992 3.6988 -0.0157 9 1 6.5511 3.2713 0.6475 10 7 5.4433 5.0455 0.4512 11 6 6.3608 3.7834 -1.4363 12 6 7.6752 4.5663 -1.4193 13 6 8.2287 4.6490 -2.8186 14 1 7.6961 4.1896 -3.6381 15 6 9.4147 5.3122 -3.0527 16 7 10.0630 5.8721 -2.0549 17 14 10.1003 5.4154 -4.7872 18 1 9.5752 6.6331 -5.4554 19 1 11.5828 5.4823 -4.7303 20 1 9.6883 4.2129 -5.5548 21 6 3.5359 -0.7349 0.0043 22 6 4.7475 -1.6310 0.0087 23 9 5.1225 -1.9018 1.3290 24 9 4.4433 -2.8298 -0.6450 25 9 5.8016 -0.9931 -0.6540 26 7 2.2894 -1.1324 0.0058 27 1 -0.3634 0.0048 1.0276 28 1 -0.3633 0.8876 -0.5180 29 1 -0.3632 -0.8924 -0.5097 30 1 1.9354 2.1267 -0.0004 31 1 5.5809 1.0801 -0.0025 32 1 6.2612 5.6324 0.5193 33 1 4.7471 5.4636 -0.1475 34 1 5.6436 4.2915 -2.0809 35 1 6.5417 2.7778 -1.8159 36 1 8.3925 4.0582 -0.7747 37 1 7.4942 5.5719 -1.0397 38 1 10.8975 6.3384 -2.2195 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345483401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:40 Heat of formation + Delta-G solvation = -111.990553 kcal Electronic energy + Delta-G solvation = -27146.483678 eV Core-core repulsion = 22610.740116 eV Total energy + Delta-G solvation = -4535.743563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.38372 -47.93311 -47.84972 -41.85887 -39.70335 -35.75658 -35.08563 -33.49837 -32.89700 -30.02131 -29.94540 -28.60984 -26.67475 -25.25881 -23.95741 -22.26304 -21.37898 -20.66067 -19.73187 -18.79496 -18.69280 -18.38781 -17.17081 -17.10359 -16.27473 -16.01400 -15.75485 -14.93762 -14.79719 -14.71192 -14.56534 -14.46884 -14.30096 -14.24673 -14.00056 -13.98471 -13.82112 -13.39467 -13.29817 -13.18673 -12.98674 -12.48946 -12.20553 -11.81369 -11.44829 -11.15923 -10.97296 -10.93610 -10.70346 -10.03725 -10.02544 -10.00242 -9.40552 -9.26608 -8.46172 -8.32097 -8.08040 -6.10472 -4.13626 1.18689 1.63651 1.86246 2.43758 2.89157 3.04159 3.26561 3.33503 3.36735 3.41738 3.63175 4.13386 4.27437 4.38196 4.58914 4.76309 4.83820 5.02243 5.04685 5.20360 5.25374 5.27122 5.42217 5.48898 5.64468 6.20465 6.25722 6.43879 6.62359 6.81201 6.91098 7.25307 7.45695 7.48600 7.58877 7.80640 7.86500 8.13973 8.28505 8.92157 9.51560 11.00406 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.003270 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.229940 B = 8560.686418 C = 9537.813623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.352 5.352 3 C 0.046 3.954 4 C 0.046 3.954 5 N -0.647 5.647 6 C 0.530 3.470 7 O -0.527 6.527 8 C 0.079 3.921 9 H 0.102 0.898 10 N -0.829 5.829 11 C -0.139 4.139 12 C 0.024 3.976 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.040 4.040 22 C 0.557 3.443 23 F -0.167 7.167 24 F -0.165 7.165 25 F -0.163 7.163 26 N -0.228 5.228 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.214 0.786 31 H 0.416 0.584 32 H 0.358 0.642 33 H 0.346 0.654 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.615 -12.998 6.231 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.139 5.139 3 C -0.101 4.101 4 C -0.059 4.059 5 N -0.294 5.294 6 C 0.319 3.681 7 O -0.402 6.402 8 C -0.036 4.036 9 H 0.120 0.880 10 N -0.362 5.362 11 C -0.179 4.179 12 C -0.013 4.013 13 C -0.563 4.563 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.208 4.208 22 C 0.500 3.500 23 F -0.148 7.148 24 F -0.146 7.146 25 F -0.145 7.145 26 N -0.055 5.055 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.230 0.770 31 H 0.254 0.746 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.335 -13.830 6.948 23.994 hybrid contribution 1.987 0.676 -1.907 2.835 sum -16.348 -13.155 5.042 21.581 Atomic orbital electron populations 1.22030 0.72367 1.05253 1.04128 1.48513 1.06986 1.02907 1.55516 1.23252 0.88581 0.94362 1.03861 1.17305 0.88444 0.87640 1.12545 1.43282 1.07241 1.05826 1.73050 1.21133 0.92019 0.81060 0.73926 1.90468 1.27684 1.73378 1.48640 1.21441 0.92324 0.90922 0.98901 0.88013 1.58744 1.17292 1.02946 1.57205 1.22426 1.00713 1.02160 0.92619 1.19106 0.89738 0.94768 0.97651 1.21167 1.06664 1.34880 0.93577 0.92676 1.25004 0.96856 0.95347 0.97060 1.69943 1.16559 1.35825 1.30819 0.86580 0.78167 0.78499 0.84706 1.20636 1.21136 1.19845 1.21730 0.93522 0.92363 1.13162 1.16854 0.80982 0.77876 0.74249 1.93259 1.92074 1.93990 1.35463 1.93238 1.92998 1.47212 1.81177 1.93212 1.58828 1.81556 1.80885 1.77190 0.98875 1.09176 1.20230 0.89960 0.88475 0.88744 0.77006 0.74614 0.82653 0.84063 0.92440 0.92291 0.96164 0.96324 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 11.48 59.84 0.69 1.25 16 2 N -0.35 -3.76 4.04 -67.83 -0.27 -4.03 16 3 C 0.05 0.56 10.38 -16.68 -0.17 0.39 16 4 C 0.05 0.62 6.78 -83.88 -0.57 0.05 16 5 N -0.65 -8.83 5.38 -10.04 -0.05 -8.88 16 6 C 0.53 8.14 7.05 -10.99 -0.08 8.06 16 7 O -0.53 -8.75 13.41 5.53 0.07 -8.67 16 8 C 0.08 1.26 3.21 -68.86 -0.22 1.04 16 9 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 10 N -0.83 -13.10 8.94 -5.65 -0.05 -13.15 16 11 C -0.14 -2.61 4.78 -26.74 -0.13 -2.74 16 12 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 13 C -0.52 -14.14 9.11 -34.44 -0.31 -14.45 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 17 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 21 C -0.04 -0.53 6.57 -82.26 -0.54 -1.07 16 22 C 0.56 6.82 3.54 36.00 0.13 6.95 16 23 F -0.17 -2.00 17.30 2.25 0.04 -1.97 16 24 F -0.17 -2.04 17.25 2.25 0.04 -2.01 16 25 F -0.16 -1.99 15.25 2.25 0.03 -1.95 16 26 N -0.23 -2.92 12.49 33.75 0.42 -2.50 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.21 2.58 5.85 -52.49 -0.31 2.28 16 31 H 0.42 5.14 6.95 -40.82 -0.28 4.86 16 32 H 0.36 5.73 7.55 -39.29 -0.30 5.43 16 33 H 0.35 5.45 8.58 -39.30 -0.34 5.11 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -31.43 340.14 -4.45 -35.88 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.08 Total: 9.56 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.44 Total: 1.45 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.78 Total: -53.49 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.07 Total: -8.67 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.11 Total: -5.92 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.43 -4.45 -35.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345483401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.111 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds