Wall clock time and date at job start Tue Mar 31 2020 13:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35813 * 126.05347 * 2 1 4 4 C 1.35756 * 107.56502 * 180.11091 * 3 2 1 5 5 N 1.40766 * 126.08146 * 179.89889 * 4 3 2 6 6 C 1.34772 * 120.00072 * 359.69422 * 5 4 3 7 7 O 1.21307 * 120.00125 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99971 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.46817 * 319.98961 * 8 6 5 10 10 N 1.46910 * 109.46728 * 199.99907 * 8 6 5 11 11 C 1.52992 * 109.47798 * 79.99728 * 8 6 5 12 12 C 1.52997 * 109.47482 * 185.00026 * 11 8 6 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.40256 * 107.83959 * 359.63860 * 4 3 2 22 22 C 1.50695 * 125.83545 * 180.20366 * 21 4 3 23 23 F 1.39897 * 109.47475 * 89.99814 * 22 21 4 24 24 F 1.39898 * 109.47277 * 210.00256 * 22 21 4 25 25 F 1.39899 * 109.47128 * 329.99774 * 22 21 4 26 26 N 1.30834 * 108.33437 * 0.22582 * 21 4 3 27 27 H 1.08992 * 109.47364 * 270.26876 * 1 2 3 28 28 H 1.08999 * 109.46947 * 30.26930 * 1 2 3 29 29 H 1.08999 * 109.46632 * 150.26721 * 1 2 3 30 30 H 1.08002 * 126.22021 * 359.97438 * 3 2 1 31 31 H 0.97003 * 119.99528 * 179.69370 * 5 4 3 32 32 H 1.00894 * 110.99558 * 176.04306 * 10 8 6 33 33 H 1.00892 * 110.99957 * 299.99600 * 10 8 6 34 34 H 1.09002 * 109.47103 * 64.99779 * 11 8 6 35 35 H 1.08998 * 109.46862 * 305.00591 * 11 8 6 36 36 H 1.09002 * 109.47153 * 59.99783 * 12 11 8 37 37 H 1.09001 * 109.46832 * 299.99974 * 12 11 8 38 38 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2642 1.0980 0.0000 4 6 3.5517 0.6675 -0.0025 5 7 4.6987 1.4835 -0.0054 6 6 4.5712 2.8252 -0.0121 7 8 3.4680 3.3296 -0.0161 8 6 5.7992 3.6988 -0.0157 9 1 6.5511 3.2713 0.6475 10 7 5.4433 5.0455 0.4512 11 6 6.3608 3.7834 -1.4363 12 6 7.6752 4.5663 -1.4193 13 6 8.2287 4.6490 -2.8186 14 1 7.6961 4.1896 -3.6381 15 6 9.4147 5.3122 -3.0527 16 7 10.0630 5.8721 -2.0549 17 14 10.1003 5.4154 -4.7872 18 1 9.5752 6.6331 -5.4554 19 1 11.5828 5.4823 -4.7303 20 1 9.6883 4.2129 -5.5548 21 6 3.5359 -0.7349 0.0043 22 6 4.7475 -1.6310 0.0087 23 9 5.1225 -1.9018 1.3290 24 9 4.4433 -2.8298 -0.6450 25 9 5.8016 -0.9931 -0.6540 26 7 2.2894 -1.1324 0.0058 27 1 -0.3634 0.0048 1.0276 28 1 -0.3633 0.8876 -0.5180 29 1 -0.3632 -0.8924 -0.5097 30 1 1.9354 2.1267 -0.0004 31 1 5.5809 1.0801 -0.0025 32 1 6.2612 5.6324 0.5193 33 1 4.7471 5.4636 -0.1475 34 1 5.6436 4.2915 -2.0809 35 1 6.5417 2.7778 -1.8159 36 1 8.3925 4.0582 -0.7747 37 1 7.4942 5.5719 -1.0397 38 1 10.8975 6.3384 -2.2195 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345483401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:39 Heat of formation + Delta-G solvation = -134.460896 kcal Electronic energy + Delta-G solvation = -27147.458066 eV Core-core repulsion = 22610.740116 eV Total energy + Delta-G solvation = -4536.717950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.34520 -48.89530 -48.81112 -42.80889 -40.88534 -37.20257 -36.16659 -34.83633 -34.36746 -31.67496 -30.95543 -29.46247 -28.14854 -26.38606 -25.39999 -23.36738 -22.47086 -22.10128 -20.95190 -19.77243 -19.66327 -19.38711 -18.64679 -18.12905 -17.91451 -16.89698 -16.75841 -16.46113 -16.02382 -15.88606 -15.71170 -15.65787 -15.55402 -15.24299 -14.96768 -14.96490 -14.85202 -14.73571 -14.64616 -14.06916 -13.83408 -13.77937 -13.45520 -13.36110 -12.95039 -12.68699 -12.51833 -12.35008 -12.01198 -11.78455 -11.70835 -11.28515 -10.85214 -10.83608 -10.54023 -9.66244 -9.09260 -8.19901 -6.29568 0.26283 0.80115 0.81132 1.40758 1.41699 1.48819 1.52052 1.73599 1.99194 2.41333 2.48372 2.68706 3.14196 3.17763 3.37889 3.67453 3.73465 3.92555 4.11263 4.22147 4.26563 4.41067 4.42334 4.54339 4.67628 4.68367 4.84293 5.10328 5.26018 5.49281 5.68285 5.74652 5.82932 5.95863 6.07563 6.23240 6.30150 6.50783 6.86049 6.96839 7.39452 8.90752 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.003270 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.229940 B = 8560.686418 C = 9537.813623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.341 5.341 3 C 0.050 3.950 4 C 0.022 3.978 5 N -0.639 5.639 6 C 0.533 3.467 7 O -0.540 6.540 8 C 0.086 3.914 9 H 0.113 0.887 10 N -0.826 5.826 11 C -0.124 4.124 12 C 0.029 3.971 13 C -0.544 4.544 14 H 0.054 0.946 15 C 0.006 3.994 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.049 4.049 22 C 0.560 3.440 23 F -0.166 7.166 24 F -0.166 7.166 25 F -0.164 7.164 26 N -0.242 5.242 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.216 0.784 31 H 0.421 0.579 32 H 0.356 0.644 33 H 0.347 0.653 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.003 0.997 37 H 0.007 0.993 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.855 -13.590 5.778 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.128 5.128 3 C -0.098 4.098 4 C -0.083 4.083 5 N -0.286 5.286 6 C 0.321 3.679 7 O -0.416 6.416 8 C -0.029 4.029 9 H 0.130 0.870 10 N -0.358 5.358 11 C -0.164 4.164 12 C -0.008 4.008 13 C -0.582 4.582 14 H 0.073 0.927 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.215 4.215 22 C 0.503 3.497 23 F -0.147 7.147 24 F -0.148 7.148 25 F -0.146 7.146 26 N -0.070 5.070 27 H 0.119 0.881 28 H 0.138 0.862 29 H 0.125 0.875 30 H 0.233 0.767 31 H 0.260 0.740 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.021 0.979 37 H 0.025 0.975 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.605 -14.458 6.495 25.210 hybrid contribution 2.268 0.836 -1.734 2.975 sum -17.337 -13.622 4.761 22.556 Atomic orbital electron populations 1.22528 0.69455 1.07045 1.05929 1.48971 1.08429 1.01813 1.53547 1.23315 0.88540 0.94874 1.03077 1.17504 0.88735 0.87898 1.14158 1.43112 1.07803 1.05297 1.72352 1.20847 0.91389 0.81507 0.74178 1.90461 1.27897 1.73787 1.49495 1.21328 0.93037 0.91358 0.97174 0.86963 1.58756 1.17132 1.02921 1.57010 1.22172 0.98182 1.01385 0.94612 1.18976 0.91540 0.94630 0.95645 1.21627 1.06942 1.34551 0.95110 0.92740 1.25828 0.97353 0.95127 1.00915 1.70051 1.17013 1.36690 1.32808 0.85577 0.77436 0.78728 0.80101 1.20032 1.20808 1.19126 1.21754 0.93843 0.92222 1.13721 1.16795 0.80879 0.77761 0.74218 1.93257 1.92065 1.93985 1.35424 1.93231 1.93016 1.47298 1.81220 1.93207 1.58866 1.81566 1.80913 1.77155 0.99009 1.10177 1.20614 0.88112 0.86204 0.87501 0.76744 0.74045 0.82901 0.83958 0.93017 0.91819 0.97901 0.97509 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 11.48 127.77 1.47 2.19 16 2 N -0.34 -6.59 4.04 -368.50 -1.49 -8.08 16 3 C 0.05 1.14 10.38 83.50 0.87 2.01 16 4 C 0.02 0.58 6.78 37.62 0.26 0.83 16 5 N -0.64 -16.80 5.38 -304.04 -1.64 -18.44 16 6 C 0.53 15.79 7.05 87.66 0.62 16.41 16 7 O -0.54 -17.27 13.41 -3.11 -0.04 -17.31 16 8 C 0.09 2.68 3.21 44.16 0.14 2.82 16 9 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 10 N -0.83 -25.63 8.94 -171.79 -1.54 -27.17 16 11 C -0.12 -4.58 4.78 30.59 0.15 -4.43 16 12 C 0.03 1.39 4.74 29.85 0.14 1.53 16 13 C -0.54 -29.36 9.11 25.60 0.23 -29.13 16 14 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 15 C 0.01 0.35 5.46 84.66 0.46 0.81 16 16 N -0.93 -53.60 13.29 21.45 0.28 -53.32 16 17 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 C -0.05 -1.24 6.57 43.20 0.28 -0.96 16 22 C 0.56 13.30 3.54 71.23 0.25 13.55 16 23 F -0.17 -3.88 17.30 44.97 0.78 -3.10 16 24 F -0.17 -4.00 17.25 44.97 0.78 -3.22 16 25 F -0.16 -3.89 15.25 44.97 0.69 -3.20 16 26 N -0.24 -5.85 12.49 -47.15 -0.59 -6.44 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.50 16 28 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.22 4.87 5.85 -2.91 -0.02 4.86 16 31 H 0.42 10.05 6.95 -92.71 -0.64 9.40 16 32 H 0.36 11.35 7.55 -89.70 -0.68 10.67 16 33 H 0.35 10.71 8.58 -89.70 -0.77 9.94 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.01 0.33 6.87 -2.39 -0.02 0.31 16 38 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -65.93 340.14 3.20 -62.74 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.93 Total: 26.84 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 4.87 Total: 5.64 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -4.96 Total: -113.44 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.04 Total: -17.31 kcal Atomic # 9 Polarization: -11.76 SS G_CDS: 2.24 Total: -9.52 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -65.93 3.20 -62.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345483401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.724 kcal (2) G-P(sol) polarization free energy of solvation -65.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds