Wall clock time and date at job start Tue Mar 31 2020 13:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 120.00163 * 2 1 4 4 C 1.50693 * 109.47101 * 270.00425 * 3 2 1 5 5 C 1.38362 * 119.84677 * 269.72092 * 4 3 2 6 6 C 1.37951 * 120.15386 * 179.76399 * 5 4 3 7 7 C 1.39639 * 119.84272 * 0.53727 * 6 5 4 8 8 C 1.43196 * 120.14923 * 179.70045 * 7 6 5 9 9 N 7.46245 * 104.55183 * 296.72268 * 2 1 3 10 10 C 1.39634 * 119.69724 * 359.71707 * 7 6 5 11 11 C 1.37939 * 119.84635 * 0.02562 * 10 7 6 12 12 C 1.34775 * 120.00100 * 180.02562 * 2 1 3 13 13 O 1.21614 * 120.00182 * 185.30065 * 12 2 1 14 14 C 1.47431 * 119.99835 * 5.29758 * 12 2 1 15 15 C 1.39229 * 120.28565 * 313.17678 * 14 12 2 16 16 C 1.38219 * 120.09636 * 180.27847 * 15 14 12 17 17 C 1.38827 * 120.67315 * 359.72136 * 16 15 14 18 18 C 1.37599 * 120.57072 * 359.97438 * 17 16 15 19 19 C 1.40706 * 119.88311 * 359.97438 * 18 17 16 20 20 C 1.40890 * 120.32998 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00277 * 149.45185 * 20 19 18 22 22 C 1.40276 * 119.99804 * 329.44947 * 20 19 18 23 23 N 1.30625 * 120.00172 * 336.31693 * 22 20 19 24 24 Si 1.86798 * 120.00108 * 156.31432 * 22 20 19 25 25 H 1.48489 * 109.47431 * 180.02562 * 24 22 20 26 26 H 1.48507 * 109.47077 * 300.00649 * 24 22 20 27 27 H 1.48503 * 109.46878 * 60.00107 * 24 22 20 28 28 H 1.09002 * 109.47107 * 265.65103 * 1 2 3 29 29 H 1.09003 * 109.46948 * 25.64702 * 1 2 3 30 30 H 1.09001 * 109.47338 * 145.65057 * 1 2 3 31 31 H 1.09002 * 109.46618 * 29.99785 * 3 2 1 32 32 H 1.08992 * 109.46922 * 150.00179 * 3 2 1 33 33 H 1.07999 * 119.92255 * 0.02562 * 5 4 3 34 34 H 1.07996 * 120.08130 * 180.25834 * 6 5 4 35 35 H 1.08001 * 120.07219 * 179.97438 * 10 7 6 36 36 H 1.08002 * 119.92456 * 180.02562 * 11 10 7 37 37 H 1.08001 * 119.95079 * 0.02562 * 15 14 12 38 38 H 1.08002 * 119.66311 * 179.73850 * 16 15 14 39 39 H 1.07998 * 119.71508 * 180.02562 * 17 16 15 40 40 H 1.08001 * 120.06102 * 180.02562 * 18 17 16 41 41 H 0.96999 * 120.00109 * 354.27051 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 3.6054 1.3073 -2.0681 6 6 3.8394 1.6979 -3.3703 7 6 2.9108 2.5045 -4.0314 8 6 3.1501 2.9191 -5.3809 9 7 3.3400 3.2480 -6.4516 10 6 1.7480 2.9053 -3.3702 11 6 1.5243 2.5030 -2.0699 12 6 2.1389 -1.1672 -0.0005 13 8 3.3511 -1.1695 0.0968 14 6 1.4064 -2.4412 -0.1190 15 6 0.2766 -2.6766 0.6598 16 6 -0.4038 -3.8747 0.5497 17 6 0.0236 -4.8528 -0.3379 18 6 1.1330 -4.6468 -1.1253 19 6 1.8428 -3.4354 -1.0333 20 6 2.9798 -3.2143 -1.8355 21 1 3.2304 -2.2129 -2.1527 22 6 3.7862 -4.2950 -2.2221 23 7 3.7931 -5.3916 -1.5124 24 14 4.8503 -4.1660 -3.7520 25 1 5.6007 -5.4332 -3.9414 26 1 3.9877 -3.9204 -4.9357 27 1 5.8078 -3.0417 -3.5955 28 1 -0.3633 -0.0779 1.0247 29 1 -0.3633 0.9265 -0.4448 30 1 -0.3634 -0.8484 -0.5798 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 4.3248 0.6871 -1.5542 34 1 4.7407 1.3843 -3.8759 35 1 1.0260 3.5296 -3.8755 36 1 0.6252 2.8120 -1.5574 37 1 -0.0663 -1.9235 1.3539 38 1 -1.2769 -4.0516 1.1603 39 1 -0.5200 -5.7832 -0.4116 40 1 1.4579 -5.4133 -1.8133 41 1 3.3063 -5.4300 -0.6743 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361636205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:00 Heat of formation + Delta-G solvation = 22.609148 kcal Electronic energy + Delta-G solvation = -25951.905455 eV Core-core repulsion = 22374.704576 eV Total energy + Delta-G solvation = -3577.200878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20644 -40.26709 -38.81686 -37.63746 -36.46159 -35.70502 -33.29164 -32.04738 -31.68972 -31.17367 -28.46833 -27.47824 -26.68824 -24.20564 -23.72426 -22.96430 -22.67485 -20.52240 -19.92109 -19.49163 -17.89065 -17.29976 -17.04543 -16.65003 -16.41821 -16.08550 -15.69190 -15.64569 -15.43764 -15.08792 -14.81719 -14.46291 -14.33697 -14.20197 -14.04713 -13.96309 -13.87217 -13.54681 -13.21708 -13.10158 -12.99954 -12.78956 -12.64452 -12.51522 -12.43744 -12.04344 -11.93868 -11.84109 -11.38131 -10.92313 -10.55102 -9.96815 -9.81563 -9.59490 -9.51625 -9.45070 -9.14039 -6.44771 -0.29523 0.40473 0.58603 0.94192 1.43352 1.53730 1.58193 1.70966 1.77780 2.11032 2.27474 2.40495 2.69305 2.80654 2.94652 3.54043 3.80020 3.84995 3.95603 4.08528 4.26882 4.34226 4.39172 4.44746 4.50301 4.63640 4.69851 4.79030 4.82870 4.89740 4.96682 5.03310 5.07224 5.18518 5.23313 5.31685 5.42266 5.57976 5.65671 5.76501 5.78755 5.85008 5.87604 5.97855 6.18330 6.36425 6.36769 6.56107 6.80064 6.89578 7.52797 8.02897 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010253 B = 0.005145 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.263265 B = 5441.348729 C = 7261.239640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.613 5.613 3 C 0.148 3.852 4 C -0.076 4.076 5 C -0.117 4.117 6 C -0.078 4.078 7 C -0.043 4.043 8 C 0.281 3.719 9 N -0.463 5.463 10 C -0.062 4.062 11 C -0.097 4.097 12 C 0.576 3.424 13 O -0.578 6.578 14 C -0.270 4.270 15 C -0.044 4.044 16 C -0.246 4.246 17 C -0.075 4.075 18 C -0.234 4.234 19 C 0.102 3.898 20 C -0.518 4.518 21 H 0.060 0.940 22 C 0.006 3.994 23 N -0.813 5.813 24 Si 1.102 2.898 25 H -0.266 1.266 26 H -0.260 1.260 27 H -0.266 1.266 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.132 0.868 35 H 0.162 0.838 36 H 0.173 0.827 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.713 14.724 2.677 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C 0.027 3.973 4 C -0.078 4.078 5 C -0.136 4.136 6 C -0.098 4.098 7 C -0.046 4.046 8 C -0.034 4.034 9 N -0.139 5.139 10 C -0.082 4.082 11 C -0.115 4.115 12 C 0.368 3.632 13 O -0.458 6.458 14 C -0.274 4.274 15 C -0.062 4.062 16 C -0.265 4.265 17 C -0.093 4.093 18 C -0.253 4.253 19 C 0.099 3.901 20 C -0.546 4.546 21 H 0.078 0.922 22 C -0.210 4.210 23 N -0.436 5.436 24 Si 0.920 3.080 25 H -0.190 1.190 26 H -0.185 1.185 27 H -0.191 1.191 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.150 0.850 35 H 0.180 0.820 36 H 0.190 0.810 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.754 14.342 0.165 15.854 hybrid contribution -0.523 0.010 1.270 1.374 sum -7.277 14.353 1.435 16.156 Atomic orbital electron populations 1.22124 0.77637 1.04162 1.02654 1.47855 1.08051 1.04394 1.74282 1.20539 0.98927 0.85544 0.92334 1.20711 0.93892 0.95705 0.97520 1.21128 0.98571 0.99090 0.94772 1.21228 0.98842 0.95433 0.94321 1.16078 0.98721 1.03569 0.86263 1.25888 0.92436 0.92321 0.92708 1.81247 1.09226 1.10724 1.12737 1.21463 0.94522 0.97684 0.94552 1.21314 0.99485 0.96681 0.94049 1.18450 0.86365 0.84403 0.73981 1.90651 1.16076 1.87906 1.51147 1.19747 1.03319 0.97873 1.06502 1.21199 0.91907 0.97083 0.96041 1.20764 1.04562 0.95346 1.05828 1.21095 0.94869 0.98553 0.94777 1.21125 0.99562 0.99397 1.05233 1.17730 0.92036 0.91157 0.89202 1.20518 1.08975 0.96562 1.28572 0.92227 1.28210 0.98037 0.90674 1.04115 1.70484 1.32588 1.28732 1.11778 0.83203 0.75334 0.77729 0.71738 1.19049 1.18496 1.19110 0.90904 0.87965 0.92365 0.85017 0.91022 0.87194 0.85046 0.82023 0.81012 0.84711 0.84891 0.86315 0.89628 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.60 9.02 127.77 1.15 2.75 16 2 N -0.61 -18.11 2.86 -855.03 -2.44 -20.55 16 3 C 0.15 3.43 5.55 85.63 0.48 3.90 16 4 C -0.08 -1.75 5.47 -19.81 -0.11 -1.86 16 5 C -0.12 -3.32 9.68 22.23 0.22 -3.11 16 6 C -0.08 -1.98 9.76 22.54 0.22 -1.76 16 7 C -0.04 -0.94 5.73 -21.36 -0.12 -1.06 16 8 C 0.28 7.02 15.33 88.33 1.35 8.38 16 9 N -0.46 -13.55 18.54 19.00 0.35 -13.20 16 10 C -0.06 -1.01 9.76 22.54 0.22 -0.79 16 11 C -0.10 -1.52 9.68 22.23 0.22 -1.30 16 12 C 0.58 24.62 6.60 86.67 0.57 25.19 16 13 O -0.58 -29.33 15.06 -4.07 -0.06 -29.39 16 14 C -0.27 -12.32 5.03 -19.70 -0.10 -12.42 16 15 C -0.04 -1.64 7.68 22.50 0.17 -1.47 16 16 C -0.25 -9.00 10.03 22.41 0.22 -8.78 16 17 C -0.07 -3.08 10.01 22.26 0.22 -2.86 16 18 C -0.23 -11.61 7.96 22.72 0.18 -11.43 16 19 C 0.10 5.38 5.21 -21.11 -0.11 5.27 16 20 C -0.52 -28.76 7.72 23.42 0.18 -28.57 16 21 H 0.06 3.42 7.15 -2.91 -0.02 3.40 16 22 C 0.01 0.34 4.95 85.37 0.42 0.76 16 23 N -0.81 -45.28 12.47 21.88 0.27 -45.01 16 24 Si 1.10 46.23 30.00 68.60 2.06 48.28 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 27 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 28 H 0.07 1.24 7.07 -2.39 -0.02 1.22 16 29 H 0.10 1.30 8.04 -2.39 -0.02 1.28 16 30 H 0.06 1.54 6.08 -2.39 -0.01 1.52 16 31 H 0.13 1.73 8.01 -2.39 -0.02 1.71 16 32 H 0.07 2.01 7.29 -2.39 -0.02 1.99 16 33 H 0.11 3.78 7.84 -2.91 -0.02 3.75 16 34 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.14 3.95 6.07 -2.91 -0.02 3.93 16 38 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 39 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 40 H 0.09 4.51 6.83 -2.91 -0.02 4.49 16 41 H 0.28 16.36 6.78 -92.71 -0.63 15.73 16 Total: -1.00 -72.27 356.87 6.77 -65.50 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 1.21 Total: 23.54 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 5.39 Total: -29.17 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -1.82 Total: -78.76 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.06 Total: -29.39 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.06 Total: 48.28 kcal Total: -72.27 6.77 -65.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361636205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.111 kcal (2) G-P(sol) polarization free energy of solvation -72.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds