Wall clock time and date at job start Tue Mar 31 2020 13:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34719 * 116.99829 * 2 1 4 4 O 1.21480 * 120.00403 * 359.97438 * 3 2 1 5 5 C 1.47640 * 120.00135 * 179.97438 * 3 2 1 6 6 C 1.40949 * 126.27893 * 180.02562 * 5 3 2 7 7 C 1.37008 * 105.46653 * 180.02562 * 6 5 3 8 8 C 1.47212 * 126.64222 * 180.02562 * 7 6 5 9 9 O 1.21629 * 120.00191 * 170.77056 * 8 7 6 10 10 N 1.34778 * 120.00020 * 350.76712 * 8 7 6 11 11 C 1.46503 * 119.99987 * 179.56091 * 10 8 7 12 12 C 1.50704 * 109.46699 * 90.00136 * 11 10 8 13 13 H 1.07997 * 120.00304 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99459 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99544 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00452 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47487 * 89.99672 * 16 14 12 18 18 H 1.48505 * 109.47127 * 209.99932 * 16 14 12 19 19 H 1.48504 * 109.46670 * 329.99627 * 16 14 12 20 20 C 1.46498 * 119.99944 * 359.56383 * 10 8 7 21 21 C 1.53004 * 109.46871 * 81.30733 * 20 10 8 22 22 C 1.47199 * 109.46979 * 185.13166 * 21 20 10 23 23 N 5.93455 * 97.61517 * 5.47414 * 2 1 3 24 24 N 1.36764 * 106.71857 * 0.02562 * 7 6 5 25 25 C 1.46500 * 125.05858 * 180.02562 * 24 7 6 26 26 N 1.28453 * 109.87924 * 359.97438 * 24 7 6 27 27 H 1.09004 * 109.46776 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47692 * 300.00222 * 1 2 3 29 29 H 1.08999 * 109.46732 * 60.00719 * 1 2 3 30 30 H 1.07997 * 127.26959 * 0.02562 * 6 5 3 31 31 H 1.08997 * 109.47181 * 210.00539 * 11 10 8 32 32 H 1.09003 * 109.47287 * 330.00383 * 11 10 8 33 33 H 0.97011 * 120.00100 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.46986 * 201.30670 * 20 10 8 35 35 H 1.09000 * 109.47090 * 321.31031 * 20 10 8 36 36 H 1.08996 * 109.47309 * 305.13208 * 21 20 10 37 37 H 1.09002 * 109.47099 * 65.13840 * 21 20 10 38 38 H 1.08998 * 109.47378 * 265.65522 * 25 24 7 39 39 H 1.08999 * 109.47226 * 25.66175 * 25 24 7 40 40 H 1.09000 * 109.46474 * 145.65919 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5379 1.2777 0.0006 6 6 4.3113 2.4561 0.0011 7 6 5.6157 2.0371 0.0009 8 6 6.8134 2.8929 0.0019 9 8 7.9127 2.4005 0.1705 10 7 6.6919 4.2223 -0.1842 11 6 7.8830 5.0753 -0.1736 12 6 8.4348 5.1846 -1.5717 13 1 7.9469 4.6706 -2.3866 14 6 9.5620 5.9419 -1.8106 15 7 10.0433 6.0377 -3.0307 16 14 10.4055 6.8316 -0.4013 17 1 11.4323 5.9438 0.2009 18 1 11.0559 8.0647 -0.9129 19 1 9.3988 7.1938 0.6286 20 6 5.3689 4.8142 -0.3969 21 6 4.6734 5.0066 0.9523 22 6 3.2991 5.4857 0.7319 23 7 2.2384 5.8554 0.5611 24 7 5.5896 0.6697 -0.0003 25 6 6.7726 -0.1945 -0.0004 26 7 4.3736 0.2560 -0.0003 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 3.9516 3.4744 0.0016 31 1 7.6161 6.0674 0.1904 32 1 8.6369 4.6386 0.4814 33 1 10.8366 6.5702 -3.1988 34 1 5.4780 5.7800 -0.8904 35 1 4.7708 4.1518 -1.0228 36 1 4.6458 4.0564 1.4856 37 1 5.2231 5.7392 1.5432 38 1 7.0207 -0.4708 -1.0252 39 1 7.6122 0.3387 0.4456 40 1 6.5650 -1.0945 0.5784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361680485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:59 Heat of formation + Delta-G solvation = 28.323996 kcal Electronic energy + Delta-G solvation = -27101.020730 eV Core-core repulsion = 23113.218403 eV Total energy + Delta-G solvation = -3987.802327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.93976 -40.26597 -39.39523 -37.24794 -36.55504 -35.66281 -33.54777 -33.08343 -31.67528 -30.83521 -28.70049 -28.11511 -27.09629 -24.52736 -23.60846 -23.54514 -21.89177 -20.62661 -19.49452 -17.98932 -17.45217 -17.27038 -16.91635 -16.78547 -16.53906 -16.27120 -16.09564 -15.39655 -15.20641 -14.59875 -14.02086 -13.85512 -13.77667 -13.55823 -13.43365 -13.17565 -12.76343 -12.67897 -12.62094 -12.39786 -12.30447 -12.16897 -11.94777 -11.71257 -11.22359 -11.15205 -10.97105 -10.96829 -10.85236 -10.63499 -10.33156 -9.77410 -9.57476 -9.44370 -9.23103 -8.71059 -8.15658 -6.20134 -4.21432 1.11438 1.30594 2.03756 2.55075 2.72347 2.81513 2.95190 3.20195 3.24438 3.26966 3.31642 3.44253 3.97409 4.10913 4.28213 4.50563 4.78534 4.87434 4.90922 4.93451 4.99358 5.03888 5.11648 5.13548 5.21340 5.25659 5.31234 5.35384 5.56906 5.65007 5.92974 5.96837 6.13651 6.36408 6.42331 6.69074 6.93390 7.41744 7.43713 7.57537 7.70775 7.79261 8.26606 8.46871 8.83052 9.37731 10.92765 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.003965 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.285247 B = 7059.930042 C = 8257.872396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.345 6.345 3 C 0.556 3.444 4 O -0.493 6.493 5 C -0.020 4.020 6 C -0.163 4.163 7 C -0.018 4.018 8 C 0.583 3.417 9 O -0.526 6.526 10 N -0.567 5.567 11 C 0.216 3.784 12 C -0.537 4.537 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.892 5.892 16 Si 0.875 3.125 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.095 3.905 21 C -0.064 4.064 22 C 0.203 3.797 23 N -0.418 5.418 24 N -0.238 5.238 25 C 0.074 3.926 26 N -0.214 5.214 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.192 0.808 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.266 0.734 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.021 -10.424 8.783 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.260 6.260 3 C 0.398 3.602 4 O -0.378 6.378 5 C -0.174 4.174 6 C -0.190 4.190 7 C -0.144 4.144 8 C 0.368 3.632 9 O -0.403 6.403 10 N -0.297 5.297 11 C 0.097 3.903 12 C -0.575 4.575 13 H 0.095 0.905 14 C -0.128 4.128 15 N -0.530 5.530 16 Si 0.701 3.299 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.188 1.188 20 C -0.031 4.031 21 C -0.105 4.105 22 C -0.116 4.116 23 N -0.095 5.095 24 N -0.029 5.029 25 C -0.065 4.065 26 N -0.055 5.055 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.208 0.792 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.144 0.856 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.946 -10.937 8.497 18.958 hybrid contribution 0.704 1.130 0.532 1.434 sum -12.241 -9.807 9.029 18.099 Atomic orbital electron populations 1.23320 0.75885 1.03812 1.02763 1.86629 1.23403 1.31971 1.84030 1.19541 0.86146 0.81758 0.72740 1.90914 1.65313 1.35895 1.45632 1.20546 0.90996 0.91083 1.14743 1.23052 0.90212 1.00596 1.05163 1.21445 0.96088 0.85135 1.11764 1.16731 0.85848 0.82198 0.78388 1.90761 1.26445 1.72930 1.50123 1.47613 1.08200 1.05536 1.68333 1.19894 0.82283 0.88983 0.99167 1.21261 1.12116 1.31552 0.92586 0.90463 1.24839 0.96407 0.95955 0.95568 1.69887 1.23071 1.40202 1.19839 0.86881 0.80590 0.79683 0.82709 1.19836 1.21017 1.18847 1.21984 0.84355 1.02569 0.94187 1.20129 0.84740 1.04221 1.01440 1.28785 0.94648 0.94016 0.94162 1.81235 1.11955 1.08798 1.07483 1.45886 1.05401 1.04652 1.46970 1.22672 0.83702 0.94694 1.05467 1.73669 0.89655 1.26423 1.15784 0.87905 0.91722 0.91671 0.79165 0.94195 0.93775 0.92367 0.87338 0.88863 0.86775 0.86071 0.89021 0.85584 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.34 -4.28 10.57 -40.54 -0.43 -4.71 16 3 C 0.56 7.95 7.97 34.57 0.28 8.23 16 4 O -0.49 -7.86 16.70 -19.25 -0.32 -8.19 16 5 C -0.02 -0.29 7.13 -82.93 -0.59 -0.88 16 6 C -0.16 -2.28 7.05 -39.00 -0.27 -2.56 16 7 C -0.02 -0.27 6.63 -82.47 -0.55 -0.82 16 8 C 0.58 10.17 7.55 -12.62 -0.10 10.07 16 9 O -0.53 -10.52 14.14 5.25 0.07 -10.44 16 10 N -0.57 -9.73 2.48 -176.40 -0.44 -10.17 16 11 C 0.22 4.47 4.19 -5.19 -0.02 4.44 16 12 C -0.54 -13.84 9.94 -34.44 -0.34 -14.18 16 13 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 14 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 15 N -0.89 -25.86 13.96 55.43 0.77 -25.08 16 16 Si 0.87 19.61 27.47 -169.99 -4.67 14.94 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.26 -5.40 6.54 56.52 0.37 -5.03 16 20 C 0.09 1.27 4.94 -4.04 -0.02 1.25 16 21 C -0.06 -0.68 4.97 -29.52 -0.15 -0.83 16 22 C 0.20 2.59 14.33 -20.76 -0.30 2.29 16 23 N -0.42 -6.50 18.54 42.16 0.78 -5.72 16 24 N -0.24 -3.29 3.75 -64.19 -0.24 -3.54 16 25 C 0.07 0.79 11.03 59.85 0.66 1.45 16 26 N -0.21 -3.06 11.97 33.32 0.40 -2.66 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.19 2.49 2.31 -52.49 -0.12 2.37 16 31 H 0.04 0.76 7.13 -51.93 -0.37 0.39 16 32 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 33 H 0.27 7.23 8.31 -40.81 -0.34 6.89 16 34 H 0.11 1.44 8.01 -51.93 -0.42 1.02 16 35 H 0.09 1.23 5.13 -51.93 -0.27 0.97 16 36 H 0.11 1.15 5.97 -51.93 -0.31 0.84 16 37 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.13 1.50 5.90 -51.93 -0.31 1.19 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -33.97 348.59 -3.52 -37.48 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.27 Total: 1.05 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: -0.43 Total: 11.77 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 1.28 Total: -47.17 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.68 Total: -23.33 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.67 Total: 14.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.97 -3.52 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361680485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.808 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds