Wall clock time and date at job start Tue Mar 31 2020 13:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34719 * 116.99829 * 2 1 4 4 O 1.21480 * 120.00403 * 359.97438 * 3 2 1 5 5 C 1.47640 * 120.00135 * 179.97438 * 3 2 1 6 6 C 1.40949 * 126.27893 * 180.02562 * 5 3 2 7 7 C 1.37008 * 105.46653 * 180.02562 * 6 5 3 8 8 C 1.47212 * 126.64222 * 180.02562 * 7 6 5 9 9 O 1.21629 * 120.00191 * 170.77056 * 8 7 6 10 10 N 1.34778 * 120.00020 * 350.76712 * 8 7 6 11 11 C 1.46503 * 119.99987 * 179.56091 * 10 8 7 12 12 C 1.50704 * 109.46699 * 90.00136 * 11 10 8 13 13 H 1.07997 * 120.00304 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99459 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99544 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00452 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47487 * 89.99672 * 16 14 12 18 18 H 1.48505 * 109.47127 * 209.99932 * 16 14 12 19 19 H 1.48504 * 109.46670 * 329.99627 * 16 14 12 20 20 C 1.46498 * 119.99944 * 359.56383 * 10 8 7 21 21 C 1.53004 * 109.46871 * 81.30733 * 20 10 8 22 22 C 1.47199 * 109.46979 * 185.13166 * 21 20 10 23 23 N 5.93455 * 97.61517 * 5.47414 * 2 1 3 24 24 N 1.36764 * 106.71857 * 0.02562 * 7 6 5 25 25 C 1.46500 * 125.05858 * 180.02562 * 24 7 6 26 26 N 1.28453 * 109.87924 * 359.97438 * 24 7 6 27 27 H 1.09004 * 109.46776 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47692 * 300.00222 * 1 2 3 29 29 H 1.08999 * 109.46732 * 60.00719 * 1 2 3 30 30 H 1.07997 * 127.26959 * 0.02562 * 6 5 3 31 31 H 1.08997 * 109.47181 * 210.00539 * 11 10 8 32 32 H 1.09003 * 109.47287 * 330.00383 * 11 10 8 33 33 H 0.97011 * 120.00100 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.46986 * 201.30670 * 20 10 8 35 35 H 1.09000 * 109.47090 * 321.31031 * 20 10 8 36 36 H 1.08996 * 109.47309 * 305.13208 * 21 20 10 37 37 H 1.09002 * 109.47099 * 65.13840 * 21 20 10 38 38 H 1.08998 * 109.47378 * 265.65522 * 25 24 7 39 39 H 1.08999 * 109.47226 * 25.66175 * 25 24 7 40 40 H 1.09000 * 109.46474 * 145.65919 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5379 1.2777 0.0006 6 6 4.3113 2.4561 0.0011 7 6 5.6157 2.0371 0.0009 8 6 6.8134 2.8929 0.0019 9 8 7.9127 2.4005 0.1705 10 7 6.6919 4.2223 -0.1842 11 6 7.8830 5.0753 -0.1736 12 6 8.4348 5.1846 -1.5717 13 1 7.9469 4.6706 -2.3866 14 6 9.5620 5.9419 -1.8106 15 7 10.0433 6.0377 -3.0307 16 14 10.4055 6.8316 -0.4013 17 1 11.4323 5.9438 0.2009 18 1 11.0559 8.0647 -0.9129 19 1 9.3988 7.1938 0.6286 20 6 5.3689 4.8142 -0.3969 21 6 4.6734 5.0066 0.9523 22 6 3.2991 5.4857 0.7319 23 7 2.2384 5.8554 0.5611 24 7 5.5896 0.6697 -0.0003 25 6 6.7726 -0.1945 -0.0004 26 7 4.3736 0.2560 -0.0003 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 3.9516 3.4744 0.0016 31 1 7.6161 6.0674 0.1904 32 1 8.6369 4.6386 0.4814 33 1 10.8366 6.5702 -3.1988 34 1 5.4780 5.7800 -0.8904 35 1 4.7708 4.1518 -1.0228 36 1 4.6458 4.0564 1.4856 37 1 5.2231 5.7392 1.5432 38 1 7.0207 -0.4708 -1.0252 39 1 7.6122 0.3387 0.4456 40 1 6.5650 -1.0945 0.5784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361680485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:58 Heat of formation + Delta-G solvation = 5.158300 kcal Electronic energy + Delta-G solvation = -27102.025269 eV Core-core repulsion = 23113.218403 eV Total energy + Delta-G solvation = -3988.806867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.06912 -41.31490 -40.72636 -38.42141 -37.58616 -36.94050 -35.03599 -34.47365 -33.15407 -31.97033 -29.80254 -29.57073 -27.97573 -25.69641 -25.15812 -24.62661 -23.15527 -21.87182 -20.67066 -19.25916 -18.82781 -18.46588 -18.34679 -17.83998 -17.64694 -17.42259 -17.11369 -16.81125 -16.42462 -16.02969 -15.52513 -15.07067 -14.75669 -14.57131 -14.52156 -14.42930 -14.28588 -13.78558 -13.68761 -13.64903 -13.40037 -13.26829 -13.06599 -13.01200 -12.73203 -12.40611 -12.23993 -12.06622 -11.98546 -11.91511 -11.85491 -11.66564 -11.05517 -10.73648 -10.58504 -10.35198 -9.63370 -8.24478 -6.30600 -0.02302 0.14260 0.99081 1.44679 1.48154 1.52097 1.56740 1.67476 1.79659 1.83692 2.01694 2.19946 2.40577 2.90100 3.03311 3.12175 3.35020 3.76831 3.85868 3.93264 4.00734 4.12375 4.29532 4.30674 4.33102 4.34018 4.38949 4.66879 4.68718 4.71852 4.84131 4.89549 4.93755 5.02809 5.14953 5.29462 5.44966 5.52991 6.24983 6.33122 6.42223 6.57696 6.66116 6.73269 7.03769 7.34069 8.92172 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.003965 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.285247 B = 7059.930042 C = 8257.872396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.559 3.441 4 O -0.515 6.515 5 C -0.034 4.034 6 C -0.150 4.150 7 C -0.029 4.029 8 C 0.583 3.417 9 O -0.557 6.557 10 N -0.569 5.569 11 C 0.223 3.777 12 C -0.536 4.536 13 H 0.030 0.970 14 C 0.012 3.988 15 N -0.949 5.949 16 Si 0.943 3.057 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.222 1.222 20 C 0.091 3.909 21 C -0.053 4.053 22 C 0.229 3.771 23 N -0.466 5.466 24 N -0.235 5.235 25 C 0.068 3.932 26 N -0.210 5.210 27 H 0.136 0.864 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.199 0.801 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.266 0.734 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.154 0.846 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.853 -10.629 11.068 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.402 3.598 4 O -0.402 6.402 5 C -0.187 4.187 6 C -0.177 4.177 7 C -0.155 4.155 8 C 0.370 3.630 9 O -0.436 6.436 10 N -0.298 5.298 11 C 0.102 3.898 12 C -0.575 4.575 13 H 0.048 0.952 14 C -0.186 4.186 15 N -0.589 5.589 16 Si 0.766 3.234 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.145 1.145 20 C -0.034 4.034 21 C -0.094 4.094 22 C -0.089 4.089 23 N -0.143 5.143 24 N -0.027 5.027 25 C -0.070 4.070 26 N -0.052 5.052 27 H 0.154 0.846 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.216 0.784 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.144 0.856 37 H 0.172 0.828 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.839 -11.163 10.799 20.803 hybrid contribution 0.903 1.034 -0.283 1.402 sum -12.936 -10.129 10.517 19.507 Atomic orbital electron populations 1.23678 0.73683 1.06143 1.02976 1.86616 1.25560 1.30858 1.83431 1.19509 0.86021 0.82022 0.72244 1.90902 1.65725 1.36656 1.46901 1.20706 0.91460 0.91250 1.15302 1.23111 0.89692 1.00953 1.03969 1.21082 0.95340 0.85625 1.13481 1.16970 0.86111 0.82366 0.77571 1.90745 1.27814 1.73540 1.51538 1.47512 1.08624 1.05403 1.68254 1.19660 0.83500 0.90996 0.95629 1.21555 1.11768 1.30109 0.94077 0.95166 1.25832 0.97327 0.97154 0.98323 1.70065 1.24061 1.42032 1.22736 0.85785 0.79973 0.77791 0.79843 1.20092 1.21410 1.14472 1.22124 0.82819 1.02466 0.95944 1.20135 0.83408 1.05765 1.00067 1.28989 0.94536 0.92647 0.92750 1.81271 1.13501 1.10613 1.08905 1.46199 1.05922 1.04565 1.45986 1.22895 0.82407 0.95193 1.06545 1.73668 0.89730 1.26295 1.15481 0.84559 0.91389 0.91633 0.78417 0.90977 0.94202 0.92500 0.87034 0.88941 0.85632 0.82849 0.88149 0.86754 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -8.11 10.57 -56.29 -0.60 -8.71 16 3 C 0.56 15.34 7.97 70.30 0.56 15.90 16 4 O -0.51 -15.97 16.70 19.90 0.33 -15.64 16 5 C -0.03 -0.95 7.13 42.27 0.30 -0.64 16 6 C -0.15 -4.00 7.05 22.65 0.16 -3.84 16 7 C -0.03 -0.84 6.63 40.44 0.27 -0.57 16 8 C 0.58 19.90 7.55 86.60 0.65 20.55 16 9 O -0.56 -22.21 14.14 -4.12 -0.06 -22.27 16 10 N -0.57 -18.75 2.48 -830.26 -2.06 -20.81 16 11 C 0.22 8.81 4.19 85.63 0.36 9.17 16 12 C -0.54 -27.95 9.94 25.60 0.25 -27.70 16 13 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 14 C 0.01 0.62 5.47 84.65 0.46 1.08 16 15 N -0.95 -56.68 13.96 21.45 0.30 -56.38 16 16 Si 0.94 39.53 27.47 68.60 1.88 41.42 16 17 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.22 -7.78 6.54 99.48 0.65 -7.12 16 20 C 0.09 2.27 4.94 86.38 0.43 2.70 16 21 C -0.05 -0.97 4.97 28.79 0.14 -0.83 16 22 C 0.23 5.38 14.33 89.44 1.28 6.66 16 23 N -0.47 -13.92 18.54 20.01 0.37 -13.55 16 24 N -0.23 -6.20 3.75 -357.01 -1.34 -7.54 16 25 C 0.07 1.36 11.03 127.77 1.41 2.77 16 26 N -0.21 -5.67 11.97 -48.49 -0.58 -6.25 16 27 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.20 4.86 2.31 -2.91 -0.01 4.86 16 31 H 0.07 2.43 7.13 -2.39 -0.02 2.42 16 32 H 0.04 1.65 6.85 -2.39 -0.02 1.63 16 33 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 34 H 0.11 2.75 8.01 -2.39 -0.02 2.73 16 35 H 0.09 2.34 5.13 -2.39 -0.01 2.33 16 36 H 0.13 2.14 5.97 -2.39 -0.01 2.13 16 37 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.11 2.66 5.90 -2.39 -0.01 2.64 16 40 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -75.99 348.59 6.78 -69.20 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.05 Total: 13.68 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 7.48 Total: 26.87 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -3.31 Total: -104.54 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.32 Total: -46.62 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.88 Total: 41.42 kcal Total: -75.99 6.78 -69.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361680485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.360 kcal (2) G-P(sol) polarization free energy of solvation -75.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds