Wall clock time and date at job start Tue Mar 31 2020 13:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34730 * 117.00196 * 2 1 4 4 O 1.21489 * 119.99673 * 0.02562 * 3 2 1 5 5 C 1.47585 * 120.00054 * 179.97438 * 3 2 1 6 6 C 1.41539 * 126.52514 * 179.97438 * 5 3 2 7 7 C 1.35350 * 105.50558 * 179.74257 * 6 5 3 8 8 N 1.35043 * 107.23663 * 0.40767 * 7 6 5 9 9 C 1.46495 * 124.87981 * 179.83653 * 8 7 6 10 10 C 1.50702 * 109.47574 * 124.71686 * 9 8 7 11 11 O 1.21283 * 119.99478 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00430 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00036 * 179.72648 * 12 10 9 14 14 C 1.50703 * 109.47126 * 270.27831 * 13 12 10 15 15 H 1.08002 * 119.99820 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99889 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00192 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00045 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46637 * 59.99722 * 18 16 14 20 20 H 1.48498 * 109.47245 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47130 * 300.00125 * 18 16 14 22 22 C 1.46506 * 119.99969 * 0.02562 * 12 10 9 23 23 C 1.53000 * 109.46992 * 269.72101 * 22 12 10 24 24 C 1.47196 * 109.47137 * 179.97438 * 23 22 12 25 25 N 9.93111 * 157.16163 * 216.81203 * 2 1 3 26 26 N 1.28471 * 110.24459 * 359.56989 * 8 7 6 27 27 H 1.08997 * 109.47268 * 299.99764 * 1 2 3 28 28 H 1.09000 * 109.47013 * 60.00189 * 1 2 3 29 29 H 1.09002 * 109.47645 * 179.97438 * 1 2 3 30 30 H 1.08007 * 127.24504 * 359.97438 * 6 5 3 31 31 H 1.07995 * 126.37881 * 180.27489 * 7 6 5 32 32 H 1.09009 * 109.47230 * 4.72027 * 9 8 7 33 33 H 1.09001 * 109.47153 * 244.71869 * 9 8 7 34 34 H 1.08994 * 109.47173 * 30.28203 * 13 12 10 35 35 H 1.09005 * 109.47077 * 150.28374 * 13 12 10 36 36 H 0.96995 * 119.99689 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.46803 * 29.71536 * 22 12 10 38 38 H 1.09000 * 109.47214 * 149.72329 * 22 12 10 39 39 H 1.09000 * 109.47214 * 300.00285 * 23 22 12 40 40 H 1.09008 * 109.47142 * 59.99450 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5375 1.2776 0.0006 6 6 4.3192 2.4575 0.0001 7 6 5.6063 2.0388 0.0068 8 7 5.5879 0.6885 0.0018 9 6 6.7781 -0.1656 0.0028 10 6 6.7105 -1.1202 1.1670 11 8 5.7612 -1.0903 1.9212 12 7 7.7043 -2.0077 1.3693 13 6 7.6413 -2.9317 2.5045 14 6 8.2955 -2.2978 3.7050 15 1 8.7165 -1.3060 3.6298 16 6 8.3576 -2.9843 4.8991 17 7 7.8454 -4.1922 4.9905 18 14 9.1691 -2.1989 6.3870 19 1 8.4582 -0.9417 6.7325 20 1 9.1052 -3.1354 7.5377 21 1 10.5885 -1.8948 6.0739 22 6 8.8507 -2.0442 0.4579 23 6 8.5640 -3.0219 -0.6835 24 6 9.7155 -3.0581 -1.5996 25 7 10.6045 -3.0860 -2.3096 26 7 4.3766 0.2605 0.0016 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9635 3.4774 -0.0011 31 1 6.4844 2.6675 0.0127 32 1 7.6702 0.4544 0.0928 33 1 6.8207 -0.7305 -0.9283 34 1 6.5995 -3.1549 2.7339 35 1 8.1634 -3.8545 2.2512 36 1 7.8894 -4.6753 5.8304 37 1 9.0214 -1.0483 0.0489 38 1 9.7371 -2.3706 1.0018 39 1 8.3931 -4.0177 -0.2745 40 1 7.6774 -2.6956 -1.2274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361891720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:26 Heat of formation + Delta-G solvation = 1.783360 kcal Electronic energy + Delta-G solvation = -26154.664952 eV Core-core repulsion = 22165.711736 eV Total energy + Delta-G solvation = -3988.953215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.72743 -40.10309 -39.37864 -36.96884 -36.39511 -35.43965 -33.66500 -32.86721 -31.01927 -30.82331 -29.21551 -27.81987 -26.71561 -24.26116 -23.91507 -22.71269 -21.52763 -20.40997 -18.97929 -17.91538 -17.79171 -17.28745 -17.00885 -16.58578 -16.37585 -16.35151 -15.60617 -15.20902 -14.88322 -14.70488 -14.17785 -13.96282 -13.77684 -13.62334 -13.24209 -13.22870 -13.06417 -12.67926 -12.57771 -12.42132 -12.15779 -12.07739 -11.84617 -11.38185 -11.12393 -10.99640 -10.83308 -10.80293 -10.73855 -10.70156 -10.29165 -9.85352 -9.65170 -9.20352 -8.98892 -8.55074 -8.05134 -6.17155 -4.22810 1.39412 1.99350 2.21028 2.59014 2.69080 2.79609 2.97197 3.22094 3.24431 3.30302 3.31728 3.43131 3.93073 4.31909 4.34295 4.61300 4.67595 4.74502 4.78680 4.91454 4.97799 5.05526 5.13468 5.18513 5.20884 5.29695 5.45432 5.55572 5.65195 5.66310 5.89164 6.21576 6.34984 6.57350 6.77912 7.19279 7.27713 7.46222 7.63213 7.77163 7.98709 8.00323 8.06172 8.60031 8.81506 9.43144 10.90966 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009350 B = 0.003763 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.866152 B = 7438.404073 C = 9176.386550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.562 3.438 4 O -0.508 6.508 5 C -0.020 4.020 6 C -0.174 4.174 7 C -0.017 4.017 8 N -0.260 5.260 9 C 0.092 3.908 10 C 0.495 3.505 11 O -0.498 6.498 12 N -0.592 5.592 13 C 0.247 3.753 14 C -0.534 4.534 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.113 3.887 23 C -0.051 4.051 24 C 0.215 3.785 25 N -0.442 5.442 26 N -0.196 5.196 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.164 0.836 31 H 0.186 0.814 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.266 0.734 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 8.149 -13.108 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.256 6.256 3 C 0.405 3.595 4 O -0.395 6.395 5 C -0.178 4.178 6 C -0.201 4.201 7 C -0.158 4.158 8 N -0.050 5.050 9 C -0.032 4.032 10 C 0.278 3.722 11 O -0.371 6.371 12 N -0.325 5.325 13 C 0.129 3.871 14 C -0.573 4.573 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.013 4.013 23 C -0.093 4.093 24 C -0.103 4.103 25 N -0.119 5.119 26 N -0.033 5.033 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.182 0.818 31 H 0.203 0.797 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.816 7.004 -13.593 15.760 hybrid contribution 0.099 1.237 1.232 1.749 sum -3.716 8.240 -12.361 15.313 Atomic orbital electron populations 1.23302 0.76145 1.03869 1.02429 1.86688 1.23207 1.31970 1.83710 1.19586 0.86369 0.81519 0.72008 1.90830 1.65626 1.36154 1.46856 1.20676 0.90873 0.91393 1.14814 1.21653 0.90906 0.99156 1.08407 1.22888 1.00099 0.84296 1.08507 1.45089 1.04814 1.05261 1.49849 1.22146 0.84715 0.94699 1.01642 1.19998 0.83985 0.82321 0.85930 1.90827 1.32001 1.68593 1.45676 1.48202 1.18840 1.36563 1.28864 1.19410 0.99385 0.87061 0.81283 1.21335 1.38276 1.02343 0.95344 0.92421 1.24905 0.95363 0.94838 0.98695 1.69901 1.44708 1.11524 1.26811 0.86573 0.79686 0.79264 0.82008 1.20184 1.21112 1.20190 1.21394 0.91750 0.98182 0.89985 1.19903 0.90832 1.05145 0.93412 1.29144 0.94403 0.93090 0.93710 1.81320 1.11023 1.08905 1.10670 1.73798 0.89457 1.26114 1.13969 0.91778 0.91930 0.87901 0.81810 0.79700 0.85104 0.86209 0.93362 0.94349 0.92479 0.90769 0.88140 0.86151 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.34 -5.06 10.58 -40.57 -0.43 -5.49 16 3 C 0.56 8.88 7.97 34.54 0.28 9.15 16 4 O -0.51 -8.37 16.72 -19.26 -0.32 -8.69 16 5 C -0.02 -0.32 7.17 -82.79 -0.59 -0.91 16 6 C -0.17 -2.20 10.81 -39.35 -0.43 -2.62 16 7 C -0.02 -0.19 11.40 -17.17 -0.20 -0.38 16 8 N -0.26 -3.50 3.17 -62.51 -0.20 -3.69 16 9 C 0.09 0.99 5.43 -5.20 -0.03 0.96 16 10 C 0.49 8.25 7.68 -10.99 -0.08 8.16 16 11 O -0.50 -11.27 15.22 5.55 0.08 -11.18 16 12 N -0.59 -9.58 2.46 -175.05 -0.43 -10.01 16 13 C 0.25 5.49 5.16 -5.19 -0.03 5.46 16 14 C -0.53 -13.59 9.38 -34.44 -0.32 -13.91 16 15 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 18 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 C 0.11 1.21 5.17 -4.04 -0.02 1.19 16 23 C -0.05 -0.43 6.03 -29.52 -0.18 -0.61 16 24 C 0.21 2.21 15.44 -20.69 -0.32 1.89 16 25 N -0.44 -5.85 18.55 42.24 0.78 -5.06 16 26 N -0.20 -3.24 10.89 33.41 0.36 -2.88 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.16 1.72 8.06 -52.48 -0.42 1.29 16 31 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.13 0.89 7.30 -51.92 -0.38 0.51 16 33 H 0.12 0.89 7.22 -51.93 -0.37 0.52 16 34 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.07 0.55 6.43 -51.93 -0.33 0.22 16 38 H 0.10 1.19 8.07 -51.93 -0.42 0.77 16 39 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.11 0.67 7.25 -51.92 -0.38 0.30 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -37.00 365.94 -4.64 -41.64 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -4.77 Total: -3.17 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -0.95 Total: 11.45 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 1.26 Total: -45.69 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.67 Total: -25.36 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.00 -4.64 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361891720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.424 kcal (2) G-P(sol) polarization free energy of solvation -37.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds