Wall clock time and date at job start Tue Mar 31 2020 13:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46503 * 119.99909 * 2 1 4 4 C 1.50696 * 109.47336 * 269.99831 * 3 2 1 5 5 C 1.38381 * 119.92399 * 269.72201 * 4 3 2 6 6 C 1.38348 * 120.30390 * 179.76106 * 5 4 3 7 7 C 1.37963 * 120.15264 * 0.51953 * 6 5 4 8 8 C 1.39619 * 119.84134 * 359.73825 * 7 6 5 9 9 C 1.43201 * 120.14433 * 179.97438 * 8 7 6 10 10 N 6.51321 * 77.51660 * 313.60741 * 2 1 3 11 11 C 1.37925 * 119.92461 * 89.99997 * 4 3 2 12 12 C 1.34774 * 120.00422 * 180.02562 * 2 1 3 13 13 O 1.21606 * 120.00191 * 184.71820 * 12 2 1 14 14 C 1.47437 * 119.99938 * 4.71411 * 12 2 1 15 15 C 1.39230 * 120.28237 * 309.25388 * 14 12 2 16 16 C 1.38220 * 120.09042 * 180.27636 * 15 14 12 17 17 C 1.38824 * 120.67794 * 359.69363 * 16 15 14 18 18 C 1.37596 * 120.56980 * 0.02562 * 17 16 15 19 19 C 1.40712 * 119.88142 * 0.02562 * 18 17 16 20 20 C 1.40887 * 120.32738 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99857 * 214.24814 * 20 19 18 22 22 C 1.40277 * 120.00114 * 34.24144 * 20 19 18 23 23 N 1.30629 * 120.00148 * 193.90352 * 22 20 19 24 24 Si 1.86802 * 119.99806 * 13.91112 * 22 20 19 25 25 H 1.48497 * 109.46864 * 267.87024 * 24 22 20 26 26 H 1.48501 * 109.47111 * 27.86953 * 24 22 20 27 27 H 1.48498 * 109.47146 * 147.87252 * 24 22 20 28 28 H 1.08997 * 109.47558 * 273.06806 * 1 2 3 29 29 H 1.09006 * 109.47244 * 33.07473 * 1 2 3 30 30 H 1.09001 * 109.47089 * 153.06532 * 1 2 3 31 31 H 1.09000 * 109.47026 * 30.00339 * 3 2 1 32 32 H 1.09004 * 109.46970 * 149.99662 * 3 2 1 33 33 H 1.08000 * 119.84812 * 0.02562 * 5 4 3 34 34 H 1.08001 * 119.92375 * 180.25990 * 6 5 4 35 35 H 1.07993 * 120.07780 * 179.72279 * 7 6 5 36 36 H 1.08000 * 120.07713 * 359.95672 * 11 4 3 37 37 H 1.08000 * 119.95267 * 359.97438 * 15 14 12 38 38 H 1.07999 * 119.65700 * 179.71196 * 16 15 14 39 39 H 1.07994 * 119.71296 * 180.02562 * 17 16 15 40 40 H 1.07992 * 120.06103 * 180.02562 * 18 17 16 41 41 H 0.96996 * 119.99861 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 3.6051 1.3082 -2.0696 6 6 3.8414 1.6990 -3.3756 7 6 2.9291 2.4955 -4.0364 8 6 1.7628 2.9027 -3.3859 9 6 0.8117 3.7299 -4.0655 10 7 0.0571 4.3860 -4.6046 11 6 1.5281 2.5001 -2.0695 12 6 2.1389 -1.1671 -0.0005 13 8 3.3519 -1.1689 0.0861 14 6 1.4055 -2.4418 -0.1060 15 6 0.3323 -2.7065 0.7405 16 6 -0.3489 -3.9052 0.6420 17 6 0.0209 -4.8545 -0.3011 18 6 1.0736 -4.6192 -1.1553 19 6 1.7842 -3.4074 -1.0750 20 6 2.8640 -3.1569 -1.9447 21 1 3.7139 -2.5867 -1.6000 22 6 2.8352 -3.6483 -3.2583 23 7 3.9267 -3.6588 -3.9758 24 14 1.2358 -4.2874 -3.9815 25 1 1.1350 -5.7498 -3.7446 26 1 0.0899 -3.6007 -3.3329 27 1 1.2111 -4.0196 -5.4420 28 1 -0.3634 0.0550 1.0261 29 1 -0.3634 0.8612 -0.5609 30 1 -0.3633 -0.9162 -0.4655 31 1 1.6083 2.0284 0.5139 32 1 3.1498 1.1384 0.5139 33 1 4.3245 0.6880 -1.5556 34 1 4.7440 1.3832 -3.8775 35 1 3.1169 2.8035 -5.0543 36 1 0.6277 2.8113 -1.5607 37 1 0.0347 -1.9762 1.4784 38 1 -1.1774 -4.1051 1.3052 39 1 -0.5224 -5.7856 -0.3647 40 1 1.3539 -5.3633 -1.8861 41 1 3.9068 -3.9989 -4.8840 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411649005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:04 Heat of formation + Delta-G solvation = 44.131982 kcal Electronic energy + Delta-G solvation = -26151.793120 eV Core-core repulsion = 22575.525542 eV Total energy + Delta-G solvation = -3576.267578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.91962 -39.00034 -37.21969 -36.44284 -35.05874 -33.71046 -32.09640 -31.22916 -30.59307 -29.96996 -27.10572 -26.00108 -24.97997 -23.78086 -22.37085 -21.73315 -21.01835 -18.92049 -18.17958 -17.48513 -16.66087 -16.20193 -15.86433 -15.47133 -15.26983 -15.11461 -14.28414 -14.16965 -14.04082 -13.80925 -13.70016 -13.14795 -12.94362 -12.88265 -12.79144 -12.63386 -12.38277 -12.13473 -12.08228 -11.98724 -11.68371 -11.61371 -11.33726 -11.09818 -10.94363 -10.82246 -10.47642 -10.12463 -9.88466 -9.28439 -9.06597 -8.89497 -8.63922 -8.22014 -7.82767 -7.71467 -7.02423 -4.60502 0.82795 1.29935 2.17269 2.54453 2.60516 2.92783 3.02897 3.11397 3.21666 3.49917 3.74210 3.84717 3.88633 4.01200 4.41244 4.79080 4.81612 5.02494 5.23100 5.26478 5.34955 5.44520 5.51170 5.64738 5.70875 5.78735 5.85552 5.90763 5.98096 6.03336 6.09524 6.24396 6.29052 6.43713 6.49488 6.62098 6.73376 6.86548 6.94158 7.04000 7.18738 7.38232 7.42410 7.52497 7.70525 7.93947 8.00252 8.34569 8.53861 8.72467 9.03928 9.97339 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.005075 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.788648 B = 5516.333301 C = 6416.918443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.621 5.621 3 C 0.157 3.843 4 C -0.103 4.103 5 C -0.053 4.053 6 C -0.117 4.117 7 C -0.070 4.070 8 C -0.044 4.044 9 C 0.263 3.737 10 N -0.432 5.432 11 C -0.060 4.060 12 C 0.589 3.411 13 O -0.538 6.538 14 C -0.243 4.243 15 C -0.046 4.046 16 C -0.252 4.252 17 C -0.065 4.065 18 C -0.231 4.231 19 C 0.126 3.874 20 C -0.431 4.431 21 H 0.113 0.887 22 C 0.085 3.915 23 N -0.794 5.794 24 Si 0.905 3.095 25 H -0.267 1.267 26 H -0.244 1.244 27 H -0.289 1.289 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 8.601 3.260 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.355 5.355 3 C 0.034 3.966 4 C -0.105 4.105 5 C -0.072 4.072 6 C -0.135 4.135 7 C -0.090 4.090 8 C -0.048 4.048 9 C -0.051 4.051 10 N -0.107 5.107 11 C -0.081 4.081 12 C 0.381 3.619 13 O -0.415 6.415 14 C -0.247 4.247 15 C -0.065 4.065 16 C -0.271 4.271 17 C -0.084 4.084 18 C -0.250 4.250 19 C 0.122 3.878 20 C -0.459 4.459 21 H 0.130 0.870 22 C -0.136 4.136 23 N -0.417 5.417 24 Si 0.731 3.269 25 H -0.193 1.193 26 H -0.167 1.167 27 H -0.216 1.216 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.079 9.589 2.252 10.661 hybrid contribution -0.476 -0.730 -0.412 0.964 sum -4.555 8.858 1.839 10.129 Atomic orbital electron populations 1.21869 0.80048 1.03586 1.00816 1.47834 1.06591 1.05075 1.75996 1.20220 0.98987 0.85810 0.91617 1.20260 0.94584 0.97635 0.97999 1.21567 0.96529 0.94751 0.94336 1.21157 0.99887 0.97618 0.94882 1.21151 0.92119 0.96260 0.99505 1.15919 0.93483 1.01199 0.94150 1.25787 0.93075 0.93012 0.93267 1.81225 1.09953 1.10708 1.08816 1.20986 0.98537 0.96183 0.92379 1.18401 0.86782 0.83141 0.73557 1.90656 1.14269 1.87223 1.49314 1.19371 1.02116 0.95193 1.08048 1.20778 0.93267 0.96127 0.96286 1.20293 1.05039 0.96769 1.04988 1.20741 0.95491 0.97305 0.94846 1.21120 1.01683 0.98083 1.04106 1.17450 0.90442 0.88978 0.90930 1.19863 1.03248 1.27885 0.94874 0.86952 1.26270 0.97806 0.92005 0.97475 1.69579 1.28686 1.33086 1.10314 0.86416 0.83283 0.80093 0.77112 1.19319 1.16734 1.21598 0.93266 0.92424 0.89552 0.90089 0.88715 0.84303 0.84816 0.85340 0.85415 0.88265 0.88485 0.88602 0.87719 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 9.13 59.84 0.55 1.61 16 2 N -0.62 -9.97 2.86 -184.23 -0.53 -10.50 16 3 C 0.16 2.05 5.58 -5.19 -0.03 2.02 16 4 C -0.10 -1.37 5.46 -104.69 -0.57 -1.94 16 5 C -0.05 -0.76 9.69 -39.49 -0.38 -1.14 16 6 C -0.12 -1.50 10.03 -39.64 -0.40 -1.90 16 7 C -0.07 -0.82 9.76 -39.17 -0.38 -1.20 16 8 C -0.04 -0.54 5.73 -106.93 -0.61 -1.15 16 9 C 0.26 3.46 15.33 -22.47 -0.34 3.11 16 10 N -0.43 -6.44 18.54 41.84 0.78 -5.66 16 11 C -0.06 -0.70 9.40 -39.17 -0.37 -1.07 16 12 C 0.59 12.27 6.70 -12.52 -0.08 12.18 16 13 O -0.54 -12.67 14.59 5.27 0.08 -12.60 16 14 C -0.24 -5.35 4.89 -104.36 -0.51 -5.86 16 15 C -0.05 -0.87 7.64 -39.22 -0.30 -1.17 16 16 C -0.25 -4.73 10.03 -39.37 -0.39 -5.13 16 17 C -0.07 -1.31 10.01 -39.60 -0.40 -1.71 16 18 C -0.23 -5.28 7.14 -38.88 -0.28 -5.55 16 19 C 0.13 3.09 5.05 -106.54 -0.54 2.55 16 20 C -0.43 -11.38 8.84 -37.81 -0.33 -11.72 16 21 H 0.11 3.27 6.38 -52.49 -0.34 2.93 16 22 C 0.09 2.15 5.44 -17.30 -0.09 2.06 16 23 N -0.79 -20.35 13.92 55.56 0.77 -19.58 16 24 Si 0.90 19.92 24.54 -169.99 -4.17 15.75 16 25 H -0.27 -5.68 6.66 56.52 0.38 -5.31 16 26 H -0.24 -5.46 6.90 56.52 0.39 -5.07 16 27 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.05 0.55 7.63 -51.93 -0.40 0.15 16 29 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.09 1.33 5.72 -51.93 -0.30 1.03 16 31 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16 32 H 0.09 1.32 7.30 -51.93 -0.38 0.94 16 33 H 0.14 2.23 7.82 -52.49 -0.41 1.82 16 34 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.10 1.60 6.73 -52.49 -0.35 1.25 16 38 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 39 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.11 2.39 4.94 -52.49 -0.26 2.13 16 41 H 0.29 6.65 8.29 -40.82 -0.34 6.31 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -29.43 352.18 -7.79 -37.22 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.55 Total: 6.08 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -5.47 Total: -16.02 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 1.02 Total: -35.74 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.17 Total: 15.75 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.43 -7.79 -37.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411649005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.353 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds