Wall clock time and date at job start Tue Mar 31 2020 13:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46503 * 119.99909 * 2 1 4 4 C 1.50696 * 109.47336 * 269.99831 * 3 2 1 5 5 C 1.38381 * 119.92399 * 269.72201 * 4 3 2 6 6 C 1.38348 * 120.30390 * 179.76106 * 5 4 3 7 7 C 1.37963 * 120.15264 * 0.51953 * 6 5 4 8 8 C 1.39619 * 119.84134 * 359.73825 * 7 6 5 9 9 C 1.43201 * 120.14433 * 179.97438 * 8 7 6 10 10 N 6.51321 * 77.51660 * 313.60741 * 2 1 3 11 11 C 1.37925 * 119.92461 * 89.99997 * 4 3 2 12 12 C 1.34774 * 120.00422 * 180.02562 * 2 1 3 13 13 O 1.21606 * 120.00191 * 184.71820 * 12 2 1 14 14 C 1.47437 * 119.99938 * 4.71411 * 12 2 1 15 15 C 1.39230 * 120.28237 * 309.25388 * 14 12 2 16 16 C 1.38220 * 120.09042 * 180.27636 * 15 14 12 17 17 C 1.38824 * 120.67794 * 359.69363 * 16 15 14 18 18 C 1.37596 * 120.56980 * 0.02562 * 17 16 15 19 19 C 1.40712 * 119.88142 * 0.02562 * 18 17 16 20 20 C 1.40887 * 120.32738 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99857 * 214.24814 * 20 19 18 22 22 C 1.40277 * 120.00114 * 34.24144 * 20 19 18 23 23 N 1.30629 * 120.00148 * 193.90352 * 22 20 19 24 24 Si 1.86802 * 119.99806 * 13.91112 * 22 20 19 25 25 H 1.48497 * 109.46864 * 267.87024 * 24 22 20 26 26 H 1.48501 * 109.47111 * 27.86953 * 24 22 20 27 27 H 1.48498 * 109.47146 * 147.87252 * 24 22 20 28 28 H 1.08997 * 109.47558 * 273.06806 * 1 2 3 29 29 H 1.09006 * 109.47244 * 33.07473 * 1 2 3 30 30 H 1.09001 * 109.47089 * 153.06532 * 1 2 3 31 31 H 1.09000 * 109.47026 * 30.00339 * 3 2 1 32 32 H 1.09004 * 109.46970 * 149.99662 * 3 2 1 33 33 H 1.08000 * 119.84812 * 0.02562 * 5 4 3 34 34 H 1.08001 * 119.92375 * 180.25990 * 6 5 4 35 35 H 1.07993 * 120.07780 * 179.72279 * 7 6 5 36 36 H 1.08000 * 120.07713 * 359.95672 * 11 4 3 37 37 H 1.08000 * 119.95267 * 359.97438 * 15 14 12 38 38 H 1.07999 * 119.65700 * 179.71196 * 16 15 14 39 39 H 1.07994 * 119.71296 * 180.02562 * 17 16 15 40 40 H 1.07992 * 120.06103 * 180.02562 * 18 17 16 41 41 H 0.96996 * 119.99861 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 3.6051 1.3082 -2.0696 6 6 3.8414 1.6990 -3.3756 7 6 2.9291 2.4955 -4.0364 8 6 1.7628 2.9027 -3.3859 9 6 0.8117 3.7299 -4.0655 10 7 0.0571 4.3860 -4.6046 11 6 1.5281 2.5001 -2.0695 12 6 2.1389 -1.1671 -0.0005 13 8 3.3519 -1.1689 0.0861 14 6 1.4055 -2.4418 -0.1060 15 6 0.3323 -2.7065 0.7405 16 6 -0.3489 -3.9052 0.6420 17 6 0.0209 -4.8545 -0.3011 18 6 1.0736 -4.6192 -1.1553 19 6 1.7842 -3.4074 -1.0750 20 6 2.8640 -3.1569 -1.9447 21 1 3.7139 -2.5867 -1.6000 22 6 2.8352 -3.6483 -3.2583 23 7 3.9267 -3.6588 -3.9758 24 14 1.2358 -4.2874 -3.9815 25 1 1.1350 -5.7498 -3.7446 26 1 0.0899 -3.6007 -3.3329 27 1 1.2111 -4.0196 -5.4420 28 1 -0.3634 0.0550 1.0261 29 1 -0.3634 0.8612 -0.5609 30 1 -0.3633 -0.9162 -0.4655 31 1 1.6083 2.0284 0.5139 32 1 3.1498 1.1384 0.5139 33 1 4.3245 0.6880 -1.5556 34 1 4.7440 1.3832 -3.8775 35 1 3.1169 2.8035 -5.0543 36 1 0.6277 2.8113 -1.5607 37 1 0.0347 -1.9762 1.4784 38 1 -1.1774 -4.1051 1.3052 39 1 -0.5224 -5.7856 -0.3647 40 1 1.3539 -5.3633 -1.8861 41 1 3.9068 -3.9989 -4.8840 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411649005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:03 Heat of formation + Delta-G solvation = 28.407538 kcal Electronic energy + Delta-G solvation = -26152.474984 eV Core-core repulsion = 22575.525542 eV Total energy + Delta-G solvation = -3576.949441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.21793 -40.28158 -38.78678 -37.58135 -36.45228 -35.48672 -33.27208 -32.32857 -32.27012 -31.46725 -28.19806 -27.52751 -26.47574 -24.85407 -23.75706 -23.15750 -22.46569 -20.35567 -19.34380 -19.21546 -18.10279 -17.41401 -17.24984 -16.87912 -16.55965 -16.32790 -15.86200 -15.51574 -15.37155 -15.06115 -15.03921 -14.51495 -14.25837 -14.21129 -14.04546 -13.93215 -13.79181 -13.61320 -13.36995 -13.18661 -13.12869 -12.80500 -12.68409 -12.44433 -12.38478 -12.15361 -12.03134 -11.91324 -11.61080 -11.03624 -10.52964 -9.94384 -9.83879 -9.52515 -9.43938 -9.42418 -8.85773 -6.49920 -0.21994 0.29499 0.52295 0.86161 1.25023 1.37039 1.46032 1.55750 1.83263 2.05515 2.12230 2.41262 2.65244 2.78836 2.94442 3.50169 3.79024 3.84849 4.00827 4.15295 4.26193 4.28110 4.37682 4.44867 4.46490 4.55046 4.71128 4.75618 4.78923 4.87502 4.89533 5.00598 5.04737 5.06790 5.23558 5.32315 5.37415 5.48261 5.58297 5.74911 5.77126 5.82750 5.89322 6.01077 6.26079 6.38718 6.42768 6.56038 6.78510 6.83406 7.51427 8.20834 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.005075 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.788648 B = 5516.333301 C = 6416.918443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.612 5.612 3 C 0.154 3.846 4 C -0.111 4.111 5 C -0.075 4.075 6 C -0.128 4.128 7 C -0.062 4.062 8 C -0.046 4.046 9 C 0.285 3.715 10 N -0.460 5.460 11 C -0.047 4.047 12 C 0.579 3.421 13 O -0.582 6.582 14 C -0.253 4.253 15 C -0.043 4.043 16 C -0.228 4.228 17 C -0.067 4.067 18 C -0.252 4.252 19 C 0.105 3.895 20 C -0.470 4.470 21 H 0.064 0.936 22 C 0.049 3.951 23 N -0.843 5.843 24 Si 0.959 3.041 25 H -0.255 1.255 26 H -0.248 1.248 27 H -0.281 1.281 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.151 0.849 36 H 0.160 0.840 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.098 0.902 41 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 9.406 4.781 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.345 5.345 3 C 0.033 3.967 4 C -0.113 4.113 5 C -0.095 4.095 6 C -0.146 4.146 7 C -0.083 4.083 8 C -0.049 4.049 9 C -0.029 4.029 10 N -0.136 5.136 11 C -0.067 4.067 12 C 0.371 3.629 13 O -0.462 6.462 14 C -0.257 4.257 15 C -0.061 4.061 16 C -0.247 4.247 17 C -0.085 4.085 18 C -0.271 4.271 19 C 0.102 3.898 20 C -0.499 4.499 21 H 0.082 0.918 22 C -0.166 4.166 23 N -0.469 5.469 24 Si 0.782 3.218 25 H -0.180 1.180 26 H -0.171 1.171 27 H -0.208 1.208 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.157 0.843 35 H 0.169 0.831 36 H 0.178 0.822 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.116 0.884 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.471 10.419 3.788 13.952 hybrid contribution 0.756 -0.918 -0.623 1.343 sum -7.715 9.501 3.165 12.642 Atomic orbital electron populations 1.22129 0.77728 1.03936 1.03187 1.47831 1.08047 1.04553 1.74039 1.20452 0.98976 0.85442 0.91870 1.20258 0.94471 0.98335 0.98219 1.21518 0.97177 0.95429 0.95331 1.21253 1.00730 0.98135 0.94446 1.21361 0.91463 0.95097 1.00361 1.15966 0.93334 1.01159 0.94440 1.25685 0.92434 0.92289 0.92511 1.81259 1.10931 1.11706 1.09685 1.21211 0.98810 0.94677 0.92037 1.18467 0.86324 0.84483 0.73673 1.90640 1.16151 1.87997 1.51433 1.19791 1.02828 0.95551 1.07578 1.21185 0.91818 0.97257 0.95866 1.20897 1.04747 0.95384 1.03679 1.21187 0.94474 0.99056 0.93811 1.21211 1.03074 0.97446 1.05368 1.17669 0.90399 0.90248 0.91513 1.19625 1.03596 1.30144 0.96575 0.91815 1.26892 1.00387 0.92087 0.97250 1.69631 1.30279 1.35947 1.11061 0.85596 0.79550 0.80064 0.76587 1.18021 1.17149 1.20756 0.90020 0.89402 0.91649 0.85303 0.90528 0.87504 0.84342 0.83085 0.82207 0.84515 0.84096 0.85100 0.88416 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.61 9.13 127.77 1.17 2.77 16 2 N -0.61 -18.74 2.86 -855.04 -2.44 -21.18 16 3 C 0.15 3.84 5.58 85.63 0.48 4.32 16 4 C -0.11 -2.90 5.46 -19.91 -0.11 -3.01 16 5 C -0.07 -2.32 9.69 22.33 0.22 -2.11 16 6 C -0.13 -3.42 10.03 22.23 0.22 -3.20 16 7 C -0.06 -1.41 9.76 22.54 0.22 -1.19 16 8 C -0.05 -1.02 5.73 -21.36 -0.12 -1.14 16 9 C 0.29 6.82 15.33 88.33 1.35 8.17 16 10 N -0.46 -12.78 18.54 19.01 0.35 -12.43 16 11 C -0.05 -0.98 9.40 22.54 0.21 -0.77 16 12 C 0.58 24.59 6.70 86.67 0.58 25.17 16 13 O -0.58 -29.45 14.59 -4.05 -0.06 -29.51 16 14 C -0.25 -11.07 4.89 -19.70 -0.10 -11.17 16 15 C -0.04 -1.47 7.64 22.50 0.17 -1.30 16 16 C -0.23 -7.40 10.03 22.41 0.22 -7.18 16 17 C -0.07 -2.45 10.01 22.26 0.22 -2.22 16 18 C -0.25 -11.34 7.14 22.72 0.16 -11.18 16 19 C 0.11 5.28 5.05 -21.11 -0.11 5.17 16 20 C -0.47 -26.72 8.84 23.41 0.21 -26.51 16 21 H 0.06 4.13 6.38 -2.91 -0.02 4.12 16 22 C 0.05 2.63 5.44 85.37 0.46 3.09 16 23 N -0.84 -46.55 13.92 21.88 0.30 -46.25 16 24 Si 0.96 42.04 24.54 68.60 1.68 43.73 16 25 H -0.26 -10.51 6.66 99.48 0.66 -9.84 16 26 H -0.25 -10.83 6.90 99.48 0.69 -10.14 16 27 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 28 H 0.08 1.34 7.63 -2.39 -0.02 1.32 16 29 H 0.09 1.45 8.10 -2.38 -0.02 1.43 16 30 H 0.06 1.77 5.72 -2.39 -0.01 1.76 16 31 H 0.13 1.96 8.01 -2.39 -0.02 1.94 16 32 H 0.08 2.20 7.30 -2.38 -0.02 2.18 16 33 H 0.11 3.95 7.82 -2.91 -0.02 3.93 16 34 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 35 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 36 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.14 3.66 6.73 -2.91 -0.02 3.65 16 38 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.10 4.46 4.94 -2.91 -0.01 4.44 16 41 H 0.29 14.50 8.29 -92.71 -0.77 13.73 16 Total: -1.00 -71.09 352.18 6.32 -64.77 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 1.01 Total: 23.15 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 5.47 Total: -22.28 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -1.79 Total: -79.86 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.06 Total: -29.51 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.68 Total: 43.73 kcal Total: -71.09 6.32 -64.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411649005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.177 kcal (2) G-P(sol) polarization free energy of solvation -71.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds