Wall clock time and date at job start Tue Mar 31 2020 13:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34640 * 116.99991 * 2 1 4 4 O 1.21519 * 119.99726 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00428 * 179.97438 * 3 2 1 6 6 C 1.47579 * 134.49469 * 180.02562 * 5 3 2 7 7 C 1.53948 * 86.11687 * 155.35746 * 6 5 3 8 8 N 1.46504 * 113.74576 * 137.95220 * 7 6 5 9 9 C 1.34776 * 120.00145 * 156.92294 * 8 7 6 10 10 O 1.21583 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99819 * 180.02562 * 9 8 7 12 12 C 1.39460 * 119.99972 * 185.05980 * 11 9 8 13 13 C 1.38645 * 119.64595 * 185.36106 * 12 11 9 14 14 C 1.40826 * 118.66761 * 179.72552 * 13 12 11 15 15 C 1.41548 * 120.99155 * 180.25819 * 14 13 12 16 16 H 1.07999 * 119.99873 * 153.82130 * 15 14 13 17 17 C 1.40034 * 119.99952 * 333.81338 * 15 14 13 18 18 N 1.30743 * 119.99980 * 350.12022 * 17 15 14 19 19 Si 1.86794 * 119.99788 * 170.11244 * 17 15 14 20 20 H 1.48504 * 109.47287 * 60.00267 * 19 17 15 21 21 H 1.48504 * 109.47218 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47504 * 300.00484 * 19 17 15 23 23 C 1.41160 * 118.00910 * 0.27764 * 14 13 12 24 24 C 1.36589 * 119.12658 * 359.97438 * 23 14 13 25 25 N 1.32066 * 121.26106 * 0.03000 * 24 23 14 26 26 C 1.47816 * 134.45331 * 359.86157 * 5 3 2 27 27 H 1.09002 * 109.47545 * 299.99993 * 1 2 3 28 28 H 1.09009 * 109.47030 * 59.99830 * 1 2 3 29 29 H 1.08995 * 109.47025 * 179.97438 * 1 2 3 30 30 H 1.09002 * 113.77112 * 41.05517 * 6 5 3 31 31 H 1.09001 * 113.76874 * 269.65176 * 6 5 3 32 32 H 1.09005 * 113.73815 * 269.15469 * 7 6 5 33 33 H 0.97001 * 119.99190 * 336.92867 * 8 7 6 34 34 H 0.97000 * 120.00046 * 5.06271 * 11 9 8 35 35 H 1.07996 * 120.66359 * 0.02562 * 13 12 11 36 36 H 0.96999 * 119.99591 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.43486 * 179.97438 * 23 14 13 38 38 H 1.08003 * 119.37267 * 179.97438 * 24 23 14 39 39 H 1.09008 * 113.76283 * 90.38221 * 26 5 3 40 40 H 1.08997 * 113.83948 * 318.92337 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4013 2.2188 0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.3868 2.3758 0.0012 7 6 5.3632 1.3726 0.6417 8 7 6.7223 1.4439 0.0994 9 6 7.7638 0.9996 0.8305 10 8 7.5753 0.5392 1.9399 11 7 9.0141 1.0657 0.3317 12 6 10.0783 0.5108 1.0420 13 6 11.3742 0.6796 0.5787 14 6 12.4337 0.1155 1.3151 15 6 13.7759 0.2623 0.8902 16 1 14.5783 0.2212 1.6118 17 6 14.0633 0.4606 -0.4659 18 7 13.1212 0.3186 -1.3613 19 14 15.7924 0.9281 -0.9955 20 1 16.7421 -0.1350 -0.5793 21 1 15.8341 1.0793 -2.4723 22 1 16.1759 2.2124 -0.3560 23 6 12.1172 -0.6009 2.4895 24 6 10.8090 -0.7187 2.8641 25 7 9.8399 -0.1766 2.1492 26 6 4.4981 0.2709 0.0037 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 4.1141 3.2031 0.6564 31 1 4.6827 2.7011 -0.9962 32 1 5.3400 1.3725 1.7315 33 1 6.8725 1.8110 -0.7858 34 1 9.1738 1.4993 -0.5211 35 1 11.5674 1.2367 -0.3261 36 1 13.3202 0.4563 -2.3007 37 1 12.8991 -1.0500 3.0839 38 1 10.5622 -1.2664 3.7617 39 1 4.8268 -0.0238 -0.9930 40 1 4.3142 -0.5790 0.6609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414483449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:30 Heat of formation + Delta-G solvation = -18.835930 kcal Electronic energy + Delta-G solvation = -25562.937537 eV Core-core repulsion = 21573.090202 eV Total energy + Delta-G solvation = -3989.847335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.99155 -39.96663 -38.99795 -37.82561 -36.37818 -34.38502 -33.82941 -33.57549 -30.53975 -29.83952 -28.42653 -27.19506 -26.56037 -26.02037 -23.00588 -21.95266 -21.44066 -20.45857 -20.14886 -18.32227 -18.14731 -17.74420 -17.32119 -17.06484 -16.19713 -15.69336 -15.26477 -15.10591 -14.65487 -14.31926 -14.21066 -14.09548 -13.79324 -13.46030 -13.27687 -13.06166 -12.79390 -12.64368 -12.54346 -12.32545 -12.18805 -11.56967 -11.43013 -11.22214 -11.04891 -10.93570 -10.84711 -10.32672 -10.17341 -9.82326 -9.67889 -9.41472 -9.20575 -9.01890 -8.00145 -7.76486 -7.07030 -6.77386 -4.65220 1.63229 2.52170 2.65388 2.79500 2.93192 2.99128 3.02250 3.22117 3.49090 3.67223 3.83310 4.22940 4.41900 4.55815 4.69181 4.81208 4.85379 4.92704 4.98190 5.11037 5.21537 5.24305 5.41091 5.66410 5.70661 5.93103 6.02343 6.45488 6.52254 6.57229 6.77445 6.91781 7.10666 7.17562 7.28519 7.38876 7.45416 7.84142 7.96700 8.06567 8.29631 8.42980 8.69897 8.73612 9.06342 9.68365 10.06976 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.028865 B = 0.002195 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.808769 B =12754.452953 C =13321.715552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.368 6.368 3 C 0.674 3.326 4 O -0.574 6.574 5 N -0.631 5.631 6 C 0.124 3.876 7 C 0.141 3.859 8 N -0.743 5.743 9 C 0.694 3.306 10 O -0.530 6.530 11 N -0.665 5.665 12 C 0.352 3.648 13 C -0.242 4.242 14 C 0.142 3.858 15 C -0.453 4.453 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.795 5.795 19 Si 0.915 3.085 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.281 4.281 24 C 0.119 3.881 25 N -0.553 5.553 26 C 0.091 3.909 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.396 0.604 34 H 0.405 0.595 35 H 0.133 0.867 36 H 0.281 0.719 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.092 0.908 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.164 2.196 -3.880 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.282 6.282 3 C 0.430 3.570 4 O -0.463 6.463 5 N -0.374 5.374 6 C 0.002 3.998 7 C 0.033 3.967 8 N -0.400 5.400 9 C 0.394 3.606 10 O -0.400 6.400 11 N -0.313 5.313 12 C 0.126 3.874 13 C -0.267 4.267 14 C 0.134 3.866 15 C -0.485 4.485 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.422 5.422 19 Si 0.739 3.261 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.305 4.305 24 C -0.035 4.035 25 N -0.272 5.272 26 C -0.033 4.033 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.230 0.770 34 H 0.240 0.760 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.110 0.890 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.808 1.926 -2.800 17.148 hybrid contribution 1.572 0.606 -1.701 2.394 sum -15.236 2.531 -4.501 16.087 Atomic orbital electron populations 1.23215 0.74324 1.03546 1.02709 1.86271 1.24093 1.30836 1.86967 1.17427 0.81389 0.82176 0.75995 1.91007 1.63595 1.35185 1.56508 1.48237 1.00673 1.12299 1.76141 1.23592 0.82813 0.91573 1.01822 1.22677 0.79352 0.93927 1.00770 1.45055 1.05078 1.69433 1.20483 1.16067 0.80363 0.79598 0.84599 1.91026 1.83152 1.47838 1.17990 1.42533 1.04811 1.59795 1.24159 1.17953 0.84594 0.93970 0.90866 1.21621 0.89465 1.09785 1.05860 1.17583 0.93256 0.86413 0.89363 1.19553 0.92687 1.43396 0.92849 0.90093 1.25944 0.99502 0.92255 0.96578 1.69733 1.34414 1.35295 1.02709 0.86254 0.81814 0.80204 0.77796 1.18915 1.20289 1.18793 1.21694 0.96490 1.09161 1.03169 1.21465 0.88781 0.96267 0.96967 1.67159 1.36025 1.16171 1.07836 1.23964 0.82550 0.94728 1.02071 0.91787 0.91900 0.87866 0.88630 0.88855 0.85054 0.76999 0.76005 0.84952 0.90787 0.88009 0.85993 0.88950 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -4.16 10.55 -40.32 -0.43 -4.58 16 3 C 0.67 8.70 8.92 54.05 0.48 9.18 16 4 O -0.57 -8.86 16.86 -19.29 -0.33 -9.18 16 5 N -0.63 -6.83 3.61 -184.16 -0.67 -7.49 16 6 C 0.12 1.06 8.59 -2.97 -0.03 1.03 16 7 C 0.14 1.43 4.40 -70.15 -0.31 1.12 16 8 N -0.74 -8.29 5.38 -60.23 -0.32 -8.62 16 9 C 0.69 11.99 8.51 -86.92 -0.74 11.25 16 10 O -0.53 -11.56 14.26 5.29 0.08 -11.48 16 11 N -0.67 -12.07 5.40 -15.86 -0.09 -12.16 16 12 C 0.35 8.20 7.41 -154.67 -1.15 7.05 16 13 C -0.24 -5.91 8.62 -38.45 -0.33 -6.24 16 14 C 0.14 3.65 5.60 -106.55 -0.60 3.05 16 15 C -0.45 -11.37 9.14 -37.65 -0.34 -11.72 16 16 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 17 C 0.08 1.77 5.31 -17.34 -0.09 1.68 16 18 N -0.80 -18.96 10.70 55.55 0.59 -18.36 16 19 Si 0.91 17.54 29.57 -169.99 -5.03 12.52 16 20 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.28 -5.19 7.11 56.52 0.40 -4.78 16 22 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 23 C -0.28 -6.75 9.85 -39.07 -0.38 -7.13 16 24 C 0.12 2.79 11.10 -18.05 -0.20 2.59 16 25 N -0.55 -13.72 7.90 -12.75 -0.10 -13.82 16 26 C 0.09 0.88 8.69 -2.85 -0.02 0.85 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 32 H 0.13 1.59 7.51 -51.93 -0.39 1.20 16 33 H 0.40 3.10 8.73 -40.82 -0.36 2.75 16 34 H 0.41 5.85 8.72 -40.82 -0.36 5.50 16 35 H 0.13 3.21 6.11 -52.49 -0.32 2.88 16 36 H 0.28 6.08 8.29 -40.82 -0.34 5.75 16 37 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 39 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -34.23 352.53 -8.39 -42.62 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.77 Total: 11.02 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: -2.64 Total: 14.22 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.58 Total: -60.45 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.68 Total: -25.25 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.23 -8.39 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414483449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.784 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds