Wall clock time and date at job start Tue Mar 31 2020 12:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46729 * 2 1 4 4 C 1.35735 * 117.00165 * 179.97438 * 3 2 1 5 5 C 1.41832 * 126.78712 * 180.23799 * 4 3 2 6 6 C 1.36696 * 103.81240 * 180.12452 * 5 4 3 7 7 C 1.47493 * 126.88403 * 179.97438 * 6 5 4 8 8 O 1.21607 * 119.99916 * 359.70813 * 7 6 5 9 9 N 1.34773 * 120.00083 * 179.71135 * 7 6 5 10 10 C 1.40045 * 120.00327 * 180.02562 * 9 7 6 11 11 C 1.40434 * 125.97183 * 0.27200 * 10 9 7 12 12 C 1.35232 * 107.86482 * 180.16656 * 11 10 9 13 13 C 1.50703 * 126.06766 * 179.84758 * 12 11 10 14 14 N 1.34973 * 107.86541 * 359.58370 * 12 11 10 15 15 C 1.46503 * 125.97339 * 180.24246 * 14 12 11 16 16 C 1.50704 * 109.47137 * 90.00057 * 15 14 12 17 17 H 1.08000 * 119.99669 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99953 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00086 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99848 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47238 * 90.00056 * 20 18 16 22 22 H 1.48499 * 109.47084 * 210.00260 * 20 18 16 23 23 H 1.48502 * 109.47152 * 329.99875 * 20 18 16 24 24 N 1.31238 * 125.97828 * 179.97438 * 10 9 7 25 25 O 1.34663 * 106.23188 * 359.66843 * 6 5 4 26 26 N 1.20871 * 111.63245 * 0.22747 * 25 6 5 27 27 H 1.09009 * 109.47274 * 60.00269 * 1 2 3 28 28 H 1.09000 * 109.46898 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47628 * 299.99447 * 1 2 3 30 30 H 1.08996 * 109.47108 * 240.00498 * 2 1 3 31 31 H 1.08996 * 109.47012 * 119.99984 * 2 1 3 32 32 H 1.08004 * 128.09638 * 0.02562 * 5 4 3 33 33 H 0.96999 * 119.99724 * 359.97438 * 9 7 6 34 34 H 1.07996 * 126.07389 * 0.03300 * 11 10 9 35 35 H 1.09002 * 109.47152 * 269.68932 * 13 12 11 36 36 H 1.09001 * 109.46980 * 149.69032 * 13 12 11 37 37 H 1.09004 * 109.47113 * 29.69013 * 13 12 11 38 38 H 1.09000 * 109.47421 * 210.00106 * 15 14 12 39 39 H 1.09003 * 109.47298 * 330.00120 * 15 14 12 40 40 H 0.96998 * 120.00072 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3519 1.5253 0.0005 5 6 4.0449 2.7627 0.0054 6 6 5.3626 2.3988 0.0009 7 6 6.5299 3.3003 0.0025 8 8 6.3675 4.5054 0.0031 9 7 7.7767 2.7884 0.0034 10 6 8.8851 3.6443 0.0055 11 6 8.8434 5.0480 0.0123 12 6 10.1176 5.5009 0.0084 13 6 10.5457 6.9458 0.0100 14 7 10.9380 4.4291 0.0089 15 6 12.4026 4.4664 0.0105 16 6 12.9032 4.4786 1.4319 17 1 12.2007 4.4599 2.2520 18 6 14.2581 4.5135 1.6853 19 7 15.1135 4.5368 0.6867 20 14 14.8785 4.5294 3.4472 21 1 15.0791 3.1340 3.9139 22 1 16.1681 5.2630 3.5112 23 1 13.8817 5.2038 4.3170 24 7 10.1444 3.2748 0.0070 25 8 5.3812 1.0523 0.0015 26 7 4.2639 0.5912 0.0013 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6290 3.7594 0.0098 33 1 7.9062 1.8271 0.0033 34 1 7.9520 5.6577 0.0173 35 1 10.6503 7.2949 -1.0173 36 1 11.5015 7.0411 0.5252 37 1 9.7948 7.5467 0.5232 38 1 12.7891 3.5862 -0.5033 39 1 12.7438 5.3656 -0.5026 40 1 16.0666 4.5617 0.8650 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433454858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:44 Heat of formation + Delta-G solvation = 53.647808 kcal Electronic energy + Delta-G solvation = -25414.271745 eV Core-core repulsion = 21427.567541 eV Total energy + Delta-G solvation = -3986.704204 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.19404 -42.37408 -40.74238 -40.10963 -36.56314 -35.37526 -34.65606 -33.54419 -32.81118 -32.52751 -32.13396 -28.73707 -27.88874 -26.33574 -24.90962 -24.59537 -24.12523 -22.38419 -21.40308 -21.32558 -19.72653 -19.18111 -18.77482 -18.07139 -17.80919 -17.17788 -17.12529 -17.05171 -16.57630 -16.22043 -15.84030 -15.62949 -15.43786 -14.87631 -14.58378 -14.32581 -14.09147 -13.80961 -13.64426 -13.60816 -13.53086 -13.15207 -13.00477 -12.84141 -12.68210 -12.39811 -12.25275 -12.15698 -12.14118 -11.68675 -11.41933 -11.35309 -11.09521 -10.72242 -10.48970 -9.63094 -9.20244 -8.31790 -6.48709 -0.55042 0.84185 0.97396 1.05355 1.39311 1.40340 1.41794 1.50249 1.53424 1.72177 2.17771 2.28927 2.40268 2.88536 2.98701 3.47389 3.57746 3.85903 3.88390 3.93175 4.06462 4.13611 4.27526 4.44793 4.53782 4.67923 4.79314 4.81383 4.86567 4.87115 4.94593 4.98313 5.12512 5.16482 5.24669 5.55139 5.81677 5.83549 5.83974 6.03363 6.25011 6.61101 6.64241 6.83632 6.97901 7.22199 8.74433 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027492 B = 0.002184 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.241985 B =12817.542765 C =13320.701713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.286 6.286 4 C 0.205 3.795 5 C -0.134 4.134 6 C -0.055 4.055 7 C 0.622 3.378 8 O -0.503 6.503 9 N -0.608 5.608 10 C 0.271 3.729 11 C -0.294 4.294 12 C 0.091 3.909 13 C -0.087 4.087 14 N -0.339 5.339 15 C 0.274 3.726 16 C -0.552 4.552 17 H 0.051 0.949 18 C 0.024 3.976 19 N -0.917 5.917 20 Si 0.969 3.031 21 H -0.276 1.276 22 H -0.272 1.272 23 H -0.269 1.269 24 N -0.351 5.351 25 O 0.118 5.882 26 N -0.395 5.395 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.213 0.787 33 H 0.430 0.570 34 H 0.174 0.826 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.026 0.974 39 H 0.055 0.945 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.513 -4.260 -2.095 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 O -0.193 6.193 4 C 0.008 3.992 5 C -0.156 4.156 6 C -0.121 4.121 7 C 0.406 3.594 8 O -0.376 6.376 9 N -0.257 5.257 10 C 0.017 3.983 11 C -0.325 4.325 12 C -0.040 4.040 13 C -0.145 4.145 14 N -0.121 5.121 15 C 0.155 3.845 16 C -0.591 4.591 17 H 0.069 0.931 18 C -0.178 4.178 19 N -0.555 5.555 20 Si 0.794 3.206 21 H -0.201 1.201 22 H -0.196 1.196 23 H -0.193 1.193 24 N -0.181 5.181 25 O 0.051 5.949 26 N -0.120 5.120 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.229 0.771 33 H 0.268 0.732 34 H 0.191 0.809 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.837 -5.513 -2.156 25.533 hybrid contribution 0.183 0.316 0.697 0.787 sum -24.654 -5.197 -1.459 25.238 Atomic orbital electron populations 1.21830 0.90049 1.04656 1.03838 1.23128 0.97570 0.79263 1.02613 1.86248 1.12060 1.32014 1.88999 1.21952 0.86447 0.90350 1.00453 1.22442 0.89175 1.00185 1.03817 1.23316 0.95426 0.84260 1.09084 1.16356 0.80124 0.86153 0.76728 1.90826 1.84491 1.13524 1.48741 1.42185 1.01986 1.10486 1.71015 1.19090 0.86755 0.90565 1.01896 1.21457 0.97374 0.92307 1.21314 1.21779 0.90159 0.92902 0.99141 1.20530 1.02994 0.86729 1.04249 1.48838 1.07393 1.01891 1.54009 1.19289 0.69083 0.98331 0.97809 1.21441 0.92405 1.53420 0.91807 0.93098 1.25706 0.96274 0.93718 1.02070 1.69996 1.03150 1.49426 1.32952 0.85380 0.77955 0.78442 0.78868 1.20142 1.19635 1.19350 1.77220 1.00397 1.09645 1.30852 1.84981 1.22936 1.18277 1.68693 1.74004 0.90582 1.22432 1.24955 0.91153 0.87883 0.91194 0.91366 0.91432 0.77053 0.73167 0.80860 0.88752 0.91455 0.87668 0.95622 0.92745 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 71.98 0.74 -0.37 16 2 C 0.05 0.63 6.38 71.98 0.46 1.09 16 3 O -0.29 -5.16 10.21 -90.58 -0.92 -6.09 16 4 C 0.21 4.13 8.00 85.77 0.69 4.82 16 5 C -0.13 -2.51 10.97 22.80 0.25 -2.26 16 6 C -0.05 -1.17 7.29 24.35 0.18 -0.99 16 7 C 0.62 16.44 7.78 86.68 0.67 17.12 16 8 O -0.50 -15.36 14.03 -4.05 -0.06 -15.42 16 9 N -0.61 -17.73 5.44 -310.44 -1.69 -19.42 16 10 C 0.27 10.41 8.10 133.37 1.08 11.49 16 11 C -0.29 -11.14 9.52 22.11 0.21 -10.93 16 12 C 0.09 3.61 6.92 41.38 0.29 3.90 16 13 C -0.09 -2.71 9.89 71.24 0.70 -2.01 16 14 N -0.34 -15.82 3.59 -338.43 -1.22 -17.04 16 15 C 0.27 14.11 5.81 85.63 0.50 14.61 16 16 C -0.55 -30.36 9.39 25.60 0.24 -30.12 16 17 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 18 C 0.02 1.26 5.46 84.66 0.46 1.73 16 19 N -0.92 -51.10 13.29 21.45 0.28 -50.81 16 20 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 N -0.35 -15.90 12.59 -54.50 -0.69 -16.59 16 25 O 0.12 2.53 11.03 65.64 0.72 3.25 16 26 N -0.40 -8.65 11.50 -172.00 -1.98 -10.62 16 27 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.21 3.05 8.06 -2.91 -0.02 3.02 16 33 H 0.43 10.40 8.65 -92.71 -0.80 9.60 16 34 H 0.17 6.07 5.91 -2.91 -0.02 6.06 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.07 2.34 7.71 -2.39 -0.02 2.32 16 37 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 38 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 2.77 7.65 -2.39 -0.02 2.75 16 40 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -66.44 357.55 3.25 -63.19 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.29 Total: 16.91 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 6.47 Total: 8.06 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -5.29 Total: -114.48 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.26 Total: -18.26 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -66.44 3.25 -63.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433454858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.842 kcal (2) G-P(sol) polarization free energy of solvation -66.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds