Wall clock time and date at job start Tue Mar 31 2020 13:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 120.00360 * 2 1 4 4 O 1.21635 * 119.99967 * 185.89508 * 3 2 1 5 5 C 1.47373 * 119.99456 * 5.88936 * 3 2 1 6 6 C 1.39257 * 120.29012 * 311.79282 * 5 3 2 7 7 C 1.38188 * 120.09231 * 180.27784 * 6 5 3 8 8 C 1.38842 * 120.67866 * 359.49361 * 7 6 5 9 9 C 1.37580 * 120.57843 * 0.51172 * 8 7 6 10 10 C 1.40714 * 119.88233 * 359.74758 * 9 8 7 11 11 C 1.40870 * 120.32911 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99735 * 149.77097 * 11 10 9 13 13 C 1.40268 * 119.99901 * 329.77383 * 11 10 9 14 14 N 1.30624 * 120.00394 * 344.85344 * 13 11 10 15 15 Si 1.86799 * 119.99844 * 164.85928 * 13 11 10 16 16 H 1.48498 * 109.47290 * 59.99906 * 15 13 11 17 17 H 1.48508 * 109.47251 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47268 * 299.99885 * 15 13 11 19 19 C 1.39861 * 119.99837 * 179.97438 * 2 1 3 20 20 C 1.39463 * 119.74669 * 188.20444 * 19 2 1 21 21 C 1.36505 * 120.45112 * 179.69860 * 20 19 2 22 22 C 1.39701 * 119.86492 * 0.59899 * 21 20 19 23 23 C 1.46526 * 133.91063 * 179.70964 * 22 21 20 24 24 C 1.34223 * 107.01411 * 179.97438 * 23 22 21 25 25 N 1.36941 * 109.91907 * 0.02562 * 24 23 22 26 26 H 0.96998 * 125.07135 * 179.97438 * 25 24 23 27 27 C 1.37712 * 109.85745 * 359.97438 * 25 24 23 28 28 C 1.38405 * 119.74886 * 8.48485 * 19 2 1 29 29 H 1.09004 * 109.47236 * 85.59585 * 1 2 3 30 30 H 1.08998 * 109.47188 * 205.59671 * 1 2 3 31 31 H 1.09003 * 109.46793 * 325.59558 * 1 2 3 32 32 H 1.08006 * 119.95204 * 0.02562 * 6 5 3 33 33 H 1.07999 * 119.66154 * 179.74866 * 7 6 5 34 34 H 1.07997 * 119.71342 * 180.28312 * 8 7 6 35 35 H 1.08006 * 120.05823 * 179.77033 * 9 8 7 36 36 H 0.96999 * 120.00247 * 180.02562 * 14 13 11 37 37 H 1.07994 * 119.77476 * 359.97438 * 20 19 2 38 38 H 1.08000 * 120.06407 * 180.29408 * 21 20 19 39 39 H 1.07999 * 126.49386 * 0.02562 * 23 22 21 40 40 H 1.07997 * 125.04078 * 180.02562 * 24 23 22 41 41 H 1.08007 * 120.14039 * 0.02562 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3504 1.1699 -0.1082 5 6 1.4078 2.4401 0.1310 6 6 0.2876 2.6910 -0.6573 7 6 -0.3915 3.8883 -0.5352 8 6 0.0244 4.8487 0.3771 9 6 1.1275 4.6300 1.1697 10 6 1.8400 3.4214 1.0614 11 6 2.9705 3.1874 1.8687 12 1 3.2230 2.1801 2.1653 13 6 3.7681 4.2626 2.2873 14 7 3.6531 5.4265 1.7057 15 14 4.9951 4.0300 3.6765 16 1 5.9762 2.9807 3.2999 17 1 5.7091 5.3081 3.9256 18 1 4.2759 3.6160 4.9080 19 6 2.1642 -1.2113 0.0005 20 6 3.5481 -1.2112 0.1733 21 6 4.2442 -2.3855 0.1824 22 6 3.5692 -3.5957 0.0051 23 6 3.9924 -4.9976 -0.0442 24 6 2.8881 -5.7346 -0.2414 25 7 1.7912 -4.9188 -0.3232 26 1 0.8806 -5.2217 -0.4637 27 6 2.1740 -3.6041 -0.1761 28 6 1.4783 -2.4003 -0.1762 29 1 -0.3634 0.0789 -1.0247 30 1 -0.3633 -0.9268 0.4440 31 1 -0.3633 0.8479 0.5807 32 1 -0.0486 1.9504 -1.3679 33 1 -1.2570 4.0773 -1.1529 34 1 -0.5206 5.7772 0.4629 35 1 1.4458 5.3844 1.8740 36 1 4.2049 6.1699 1.9949 37 1 4.0721 -0.2762 0.3053 38 1 5.3151 -2.3785 0.3214 39 1 5.0017 -5.3679 0.0594 40 1 2.8676 -6.8112 -0.3235 41 1 0.4071 -2.3931 -0.3145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001449004587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:32 Heat of formation + Delta-G solvation = 68.498086 kcal Electronic energy + Delta-G solvation = -25898.232015 eV Core-core repulsion = 22323.021030 eV Total energy + Delta-G solvation = -3575.210985 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.06279 -39.82528 -37.44110 -36.17513 -34.74611 -33.74484 -31.49268 -30.26408 -29.77053 -29.13193 -27.89982 -26.55314 -25.45959 -23.04587 -22.25983 -21.26088 -20.77116 -20.51658 -19.07217 -17.72460 -17.32823 -16.63667 -16.45585 -15.45727 -15.24293 -14.90995 -14.64082 -14.19809 -14.06246 -13.67786 -13.55583 -13.41960 -13.10126 -12.93197 -12.72790 -12.53162 -12.28949 -11.97495 -11.73222 -11.65138 -11.35583 -11.24243 -11.10238 -10.90106 -10.67072 -10.55301 -9.96780 -9.76085 -9.72246 -9.30306 -8.99287 -8.52611 -7.68287 -7.62134 -7.53893 -7.09583 -6.90694 -4.51013 1.36986 1.98389 2.38458 2.75611 2.85453 3.04157 3.08861 3.12665 3.18118 3.52398 3.73456 3.88882 4.32267 4.52204 4.93229 4.98929 5.29032 5.34324 5.45430 5.55256 5.57119 5.66953 5.69994 5.84733 5.92822 6.01337 6.03737 6.13640 6.22326 6.29602 6.46145 6.71676 6.72519 6.89449 6.93520 7.00454 7.07357 7.11256 7.13976 7.35130 7.57888 7.62279 7.67410 7.74313 7.88227 7.97271 8.08965 8.44926 8.68178 8.75477 9.00279 10.04187 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.004016 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.214639 B = 6970.237583 C = 8565.866592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.562 5.562 3 C 0.582 3.418 4 O -0.506 6.506 5 C -0.262 4.262 6 C -0.058 4.058 7 C -0.247 4.247 8 C -0.091 4.091 9 C -0.154 4.154 10 C 0.152 3.848 11 C -0.432 4.432 12 H 0.082 0.918 13 C 0.079 3.921 14 N -0.781 5.781 15 Si 0.911 3.089 16 H -0.260 1.260 17 H -0.276 1.276 18 H -0.262 1.262 19 C 0.202 3.798 20 C -0.184 4.184 21 C -0.053 4.053 22 C -0.144 4.144 23 C -0.196 4.196 24 C 0.029 3.971 25 N -0.601 5.601 26 H 0.410 0.590 27 C 0.121 3.879 28 C -0.200 4.200 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.285 0.715 37 H 0.182 0.818 38 H 0.121 0.879 39 H 0.141 0.859 40 H 0.164 0.836 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.687 -14.093 -1.367 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.284 5.284 3 C 0.378 3.622 4 O -0.382 6.382 5 C -0.267 4.267 6 C -0.076 4.076 7 C -0.266 4.266 8 C -0.110 4.110 9 C -0.173 4.173 10 C 0.148 3.852 11 C -0.460 4.460 12 H 0.100 0.900 13 C -0.141 4.141 14 N -0.405 5.405 15 Si 0.734 3.266 16 H -0.185 1.185 17 H -0.201 1.201 18 H -0.186 1.186 19 C 0.105 3.895 20 C -0.203 4.203 21 C -0.072 4.072 22 C -0.149 4.149 23 C -0.222 4.222 24 C -0.096 4.096 25 N -0.205 5.205 26 H 0.246 0.754 27 C 0.013 3.987 28 C -0.225 4.225 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.135 0.865 36 H 0.097 0.903 37 H 0.199 0.801 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.181 0.819 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.060 -13.782 -1.449 14.440 hybrid contribution -0.076 -0.321 0.352 0.482 sum -4.136 -14.102 -1.097 14.737 Atomic orbital electron populations 1.22062 0.78958 1.03720 1.02164 1.45687 1.07364 1.04434 1.70897 1.18740 0.86841 0.82882 0.73757 1.90402 1.14357 1.85921 1.47547 1.19231 1.03082 0.96831 1.07573 1.20711 0.93611 0.96354 0.96947 1.20257 1.03886 0.96400 1.06057 1.20799 0.96750 0.97156 0.96282 1.21262 0.95134 0.98981 1.01930 1.17326 0.90646 0.89384 0.87820 1.19595 1.06816 0.94639 1.24930 0.90008 1.25973 0.97808 0.94217 0.96121 1.69700 1.34198 1.02256 1.34301 0.86301 0.80307 0.78849 0.81097 1.18465 1.20125 1.18628 1.17672 0.91637 0.84503 0.95736 1.22267 0.92971 1.01593 1.03491 1.20290 0.99320 0.90087 0.97533 1.19220 0.92384 0.93674 1.09619 1.21655 0.98056 0.91291 1.11161 1.21642 0.86029 0.95893 1.06053 1.41699 1.09167 1.04414 1.65245 0.75373 1.17787 0.93832 0.84407 1.02627 1.19391 0.98967 0.88771 1.15328 0.92347 0.91307 0.89041 0.88739 0.88978 0.89007 0.86456 0.90346 0.80146 0.86092 0.84159 0.81903 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 8.42 59.84 0.50 1.59 16 2 N -0.56 -10.70 3.10 -122.02 -0.38 -11.08 16 3 C 0.58 13.39 6.46 -12.54 -0.08 13.30 16 4 O -0.51 -12.92 12.27 5.25 0.06 -12.86 16 5 C -0.26 -6.20 5.00 -104.37 -0.52 -6.72 16 6 C -0.06 -1.20 7.69 -39.22 -0.30 -1.50 16 7 C -0.25 -5.05 10.03 -39.38 -0.39 -5.44 16 8 C -0.09 -1.98 10.01 -39.60 -0.40 -2.38 16 9 C -0.15 -3.77 8.65 -38.89 -0.34 -4.10 16 10 C 0.15 3.92 5.53 -106.54 -0.59 3.33 16 11 C -0.43 -11.39 7.82 -37.82 -0.30 -11.68 16 12 H 0.08 2.19 7.09 -52.49 -0.37 1.82 16 13 C 0.08 1.97 5.16 -17.30 -0.09 1.88 16 14 N -0.78 -19.72 11.19 55.56 0.62 -19.10 16 15 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 16 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 19 C 0.20 3.74 6.48 -83.68 -0.54 3.19 16 20 C -0.18 -3.56 8.89 -39.75 -0.35 -3.92 16 21 C -0.05 -0.90 10.04 -39.66 -0.40 -1.30 16 22 C -0.14 -2.27 6.37 -105.09 -0.67 -2.94 16 23 C -0.20 -2.47 11.08 -37.66 -0.42 -2.89 16 24 C 0.03 0.30 11.82 -16.69 -0.20 0.10 16 25 N -0.60 -6.69 6.08 -10.64 -0.06 -6.75 16 26 H 0.41 3.20 8.96 -40.82 -0.37 2.84 16 27 C 0.12 1.80 7.27 -84.00 -0.61 1.19 16 28 C -0.20 -3.11 9.16 -39.22 -0.36 -3.47 16 29 H 0.06 0.77 7.12 -51.93 -0.37 0.40 16 30 H 0.07 0.84 6.32 -51.93 -0.33 0.51 16 31 H 0.09 1.44 6.10 -51.93 -0.32 1.12 16 32 H 0.09 1.70 6.20 -52.48 -0.33 1.37 16 33 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.12 2.93 6.50 -52.48 -0.34 2.59 16 36 H 0.29 6.55 8.29 -40.82 -0.34 6.21 16 37 H 0.18 3.99 4.68 -55.44 -0.26 3.73 16 38 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.55 6.27 -52.48 -0.33 1.22 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -30.35 337.26 -10.01 -40.36 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -4.26 Total: 12.31 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -6.05 Total: -21.75 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.18 Total: -36.93 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.06 Total: -12.86 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.35 -10.01 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449004587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.854 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds